Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Forward (+)

69788564 .. 69791244

Gene Structure 2681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG502200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTTTGCAGGCACTTGGGTCCAAGATGACTCTTACCCAATGTACCAATCTTCAGAGTGCCCTTTAATCATAGACCCTGAGTTCAATTGCCAAATGTATGGGCGCCCAGATTCTGAGTACCTCAAATATAGATGGAGACCCCTCAATTGTGAACTCCCAAGGTTCAATGGGGTTGAGTTTTTGCTCAGAATGAAAGGGAAAACAGTGATGTTTGTAGGTGATTCACTTGGGAGGAATCAATGGGAGTCTTTGGTTTGCTTGATATACTCCGCAGCTCCCCAAACCCAAACCCAAATGGTGAAAGGAGATCCACTCTCAACATTCAACTTCTTGGACTATGGTGTAACCCTGCAATACTACCGAGCTCCATATCTGGTGGACATCGATATGATGGAAGGAAAGAGAGTTCTGAGGCTTGAGGACATATCGGAGAACAGCAATGCGTGGCGTTCCGCCGATGTGCTGTCGTTTAACACCGGTCACTGGTGGAGTCACACCGGAGGTCTCCAAGGGTGGGATTACATGGAATCAGGAGGAAAATATTACAAAGATATGGATCGTTTGGCTGCTTTGGAGAAAGGAATGAGAACCTGGGCAAATTGGGTCGACAAAAACATCGATACCACAAGGACCCGAGTTTTCTTTCTCTCCATATCTCCCACACATTACGACCCAAATGAATGGAATGGGGGAGCAACACCTACAACCACCAAGAACTGCTATGGAGAAACATCACCGATGACAGTGAGTGGGATAACTTATCCGGGGACGGTATATCCAGACCAGATGAGAGTGATGGACAGTGTGATCCGAGAAATGCGCAACCCTGCATTTCTGCTAGACATTACAAAGCTTTCAGAGCTCAGAAAAGATGGGCACCCTTCAATCTACAGCGGGGATTTGAGTCCTGCACAGAGAGCGAATCCTCAACGTTCAGCTGATTGTAGCCATTGGTGCCTTCCTGGATTGCCAGACACTTGGAACCAACTGTTTTACACTACCTTGCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

337

Amino Acids

38.83

Weight (kDa)

5.33

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	1 - 51	4.6e-19	PMR5 N terminal Domain
PC-Esterase	PF13839	52 - 333	3.6e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	821
AccB1I	GGYRCC	3 cut(s)	102, 876, 954
AccI	GTMKAC	1 cut(s)	606
AciI	CCGC	3 cut(s)	270, 453, 894
AclI	AACGTT	1 cut(s)	931
AclWI	GGATC	3 cut(s)	302, 564, 802
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	2 cut(s)	44, 119
AfiI	CCNNNNNNNGG	2 cut(s)	483, 514
AgeI	ACCGGT	1 cut(s)	476
AgsI	TTSAA	4 cut(s)	85, 166, 325, 885
AjnI	CCWGG	2 cut(s)	590, 961
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	5 cut(s)	275, 365, 853, 862, 938
AluI	AGCT	5 cut(s)	275, 365, 853, 862, 938
Alw21I	GWGCWC	2 cut(s)	367, 864
Alw26I	GTCTC	2 cut(s)	130, 509
AlwI	GGATC	3 cut(s)	302, 564, 802
AlwNI	CAGNNNCTG	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	633
ApeKI	GCWGC	2 cut(s)	272, 566
AsiGI	ACCGGT	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	105, 822
AspS9I	GGNCC	2 cut(s)	19, 630
AsuC2I	CCSGG	1 cut(s)	765
AsuHPI	GGTGA	3 cut(s)	230, 310, 726
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	2 cut(s)	19, 630
BaeGI	GKGCMC	2 cut(s)	62, 879
BanI	GGYRCC	3 cut(s)	102, 876, 954
BanII	GRGCYC	2 cut(s)	367, 864
Bbv12I	GWGCWC	2 cut(s)	367, 864
BbvI	GCAGC	2 cut(s)	284, 553
BccI	CCATC	4 cut(s)	126, 385, 790, 866
BciT130I	CCWGG	2 cut(s)	592, 963
BcnI	CCSGG	1 cut(s)	765
BcoDI	GTCTC	2 cut(s)	130, 509
BfaI	CTAG	1 cut(s)	839
BfmI	CTRYAG	1 cut(s)	889
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	2 cut(s)	273, 567
BlsI	GCNGC	2 cut(s)	274, 568
Bme1390I	CCNGG	3 cut(s)	592, 765, 963
Bme18I	GGWCC	2 cut(s)	19, 630
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	19, 630
BmiI	GGNNCC	6 cut(s)	20, 104, 632, 878, 956, 983
BmrFI	CCNGG	3 cut(s)	592, 765, 963
BplI	GAGNNNNNCTC	2 cut(s)	297, 329
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	765
Bsa29I	ATCGAT	2 cut(s)	384, 618
BsaBI	GATNNNNATC	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	103
BsaI	GGTCTC	2 cut(s)	130, 509
BsaJI	CCNNGG	4 cut(s)	158, 508, 591, 764
BsaWI	WCCGGW	2 cut(s)	476, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	483, 514
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	2 cut(s)	592, 963
BseCI	ATCGAT	2 cut(s)	384, 618
BseDI	CCNNGG	4 cut(s)	158, 508, 591, 764
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	2 cut(s)	483, 514
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	5 cut(s)	69, 105, 199, 401, 877
BseNI	ACTGG	1 cut(s)	488
BseSI	GKGCMC	2 cut(s)	62, 879
BseXI	GCAGC	2 cut(s)	284, 553
BsgI	GTGCAG	1 cut(s)	894
BshNI	GGYRCC	3 cut(s)	102, 876, 954
BshTI	ACCGGT	1 cut(s)	476
BshVI	ATCGAT	2 cut(s)	384, 618
BsiHKAI	GWGCWC	2 cut(s)	367, 864
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	3 cut(s)	477, 498, 764
BslFI	GGGAC	1 cut(s)	781
BslI	CCNNNNNNNGG	2 cut(s)	483, 514
BsmAI	GTCTC	2 cut(s)	130, 509
BsmFI	GGGAC	1 cut(s)	781
Bso31I	GGTCTC	2 cut(s)	130, 509
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	4 cut(s)	62, 367, 864, 879
Bsp143I	GATC	3 cut(s)	307, 556, 807
BspACI	CCGC	3 cut(s)	270, 453, 894
BspCNI	CTCAG	5 cut(s)	70, 106, 198, 402, 876
BspDI	ATCGAT	2 cut(s)	384, 618
BspLI	GGNNCC	6 cut(s)	20, 104, 632, 878, 956, 983
BspPI	GGATC	3 cut(s)	302, 564, 802
BspT107I	GGYRCC	3 cut(s)	102, 876, 954
BspTNI	GGTCTC	2 cut(s)	130, 509
BsrDI	GCAATG	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	4 cut(s)	158, 508, 591, 764
BssMI	GATC	3 cut(s)	307, 556, 807
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	2 cut(s)	158, 508
Bst2UI	CCWGG	2 cut(s)	592, 963
Bst4CI	ACNGT	5 cut(s)	205, 745, 772, 803, 990
BstACI	GRCGYC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	5 cut(s)	78, 114, 185, 410, 863
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	105, 822
BstKTI	GATC	3 cut(s)	310, 559, 810
BstMAI	GTCTC	2 cut(s)	130, 509
BstMBI	GATC	3 cut(s)	307, 556, 807
BstMWI	GCNNNNNNNGC	3 cut(s)	859, 917, 954
BstNI	CCWGG	2 cut(s)	592, 963
BstSCI	CCNGG	3 cut(s)	590, 763, 961
BstSFI	CTRYAG	1 cut(s)	889
BstSLI	GKGCMC	2 cut(s)	62, 879
BstV1I	GCAGC	2 cut(s)	284, 553
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	3 cut(s)	98, 681, 978
BstYI	RGATCY	1 cut(s)	307
Bsu15I	ATCGAT	2 cut(s)	384, 618
BsuTUI	ATCGAT	2 cut(s)	384, 618
BtsIMutI	CAGTG	4 cut(s)	210, 481, 750, 808
Cac8I	GCNNGC	1 cut(s)	10
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	2 cut(s)	105, 822
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	19, 630
ClaI	ATCGAT	2 cut(s)	384, 618
Csp6I	GTAC	2 cut(s)	43, 118
CspAI	ACCGGT	1 cut(s)	476
CviAII	CATG	1 cut(s)	523
CviJI	RGCY	8 cut(s)	275, 365, 415, 566, 853, 862, 938, 948
CviKI_1	RGCY	8 cut(s)	275, 365, 415, 566, 853, 862, 938, 948
CviQI	GTAC	2 cut(s)	43, 118
DdeI	CTNAG	5 cut(s)	78, 114, 185, 410, 863
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	3 cut(s)	309, 558, 809
DpnII	GATC	3 cut(s)	307, 556, 807
EciI	GGCGGA	1 cut(s)	442
Ecl136II	GAGCTC	2 cut(s)	365, 862
Eco130I	CCWWGG	2 cut(s)	158, 508
Eco24I	GRGCYC	2 cut(s)	367, 864
Eco31I	GGTCTC	2 cut(s)	130, 509
Eco47I	GGWCC	2 cut(s)	19, 630
Eco53kI	GAGCTC	2 cut(s)	365, 862
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	633
EcoICRI	GAGCTC	2 cut(s)	365, 862
EcoO109I	RGGNCCY	1 cut(s)	630
EcoRII	CCWGG	2 cut(s)	590, 961
EcoT14I	CCWWGG	2 cut(s)	158, 508
EcoT38I	GRGCYC	2 cut(s)	367, 864
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
ErhI	CCWWGG	2 cut(s)	158, 508
FaeI	CATG	1 cut(s)	526
FaqI	GGGAC	1 cut(s)	781
FatI	CATG	1 cut(s)	522
FauI	CCCGC	1 cut(s)	887
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	2 cut(s)	273, 567
FriOI	GRGCYC	2 cut(s)	367, 864
Fsp4HI	GCNGC	2 cut(s)	273, 567
FspBI	CTAG	1 cut(s)	839
FspI	TGCGCA	1 cut(s)	821
GlaI	GCGC	2 cut(s)	104, 821
GluI	GCNGC	2 cut(s)	273, 567
HaeII	RGCGCY	1 cut(s)	106
HapII	CCGG	3 cut(s)	477, 498, 764
HhaI	GCGC	2 cut(s)	105, 822
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	526
Hin6I	GCGC	2 cut(s)	103, 820
HinP1I	GCGC	2 cut(s)	103, 820
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	9 cut(s)	29, 110, 221, 235, 245, 490, 527, 904, 922
HpaII	CCGG	3 cut(s)	477, 498, 764
HphI	GGTGA	3 cut(s)	230, 310, 726
Hpy166II	GTNNAC	3 cut(s)	152, 379, 607
Hpy188I	TCNGA	8 cut(s)	55, 115, 188, 411, 430, 812, 859, 866
Hpy188III	TCNNGA	2 cut(s)	531, 779
Hpy8I	GTNNAC	3 cut(s)	152, 379, 607
HpyAV	CCTTC	3 cut(s)	389, 891, 968
HpyCH4III	ACNGT	5 cut(s)	205, 745, 772, 803, 990
HpyCH4IV	ACGT	1 cut(s)	931
HpyCH4V	TGCA	4 cut(s)	8, 352, 830, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	859, 917, 954
HpyF3I	CTNAG	5 cut(s)	78, 114, 185, 410, 863
HpySE526I	ACGT	1 cut(s)	931
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	526
HspAI	GCGC	2 cut(s)	103, 820
KasI	GGCGCC	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	307, 556, 807
LmnI	GCTCC	3 cut(s)	280, 370, 692
Lsp1109I	GCAGC	2 cut(s)	284, 553
MaeI	CTAG	1 cut(s)	839
MaeII	ACGT	1 cut(s)	931
MaeIII	GTNAC	3 cut(s)	343, 479, 491
MalI	GATC	3 cut(s)	309, 558, 809
MboI	GATC	3 cut(s)	307, 556, 807
MboII	GAAGA	2 cut(s)	42, 1000
MfeI	CAATTG	2 cut(s)	85, 145
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	4 cut(s)	62, 367, 864, 879
MluCI	AATT	3 cut(s)	85, 145, 598
Mly113I	GGCGCC	1 cut(s)	103
MlyI	GAGTC	4 cut(s)	23, 254, 499, 913
MnlI	CCTC	8 cut(s)	131, 152, 225, 405, 412, 494, 527, 936
MseI	TTAA	2 cut(s)	65, 471
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	2 cut(s)	894, 938
MspI	CCGG	3 cut(s)	477, 498, 764
MspR9I	CCNGG	3 cut(s)	592, 765, 963
MunI	CAATTG	2 cut(s)	85, 145
MvaI	CCWGG	2 cut(s)	592, 963
MwoI	GCNNNNNNNGC	3 cut(s)	859, 917, 954
NarI	GGCGCC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	765
NdeII	GATC	3 cut(s)	307, 556, 807
NlaIII	CATG	1 cut(s)	526
NlaIV	GGNNCC	6 cut(s)	20, 104, 632, 878, 956, 983
NmuCI	GTSAC	2 cut(s)	479, 491
NsbI	TGCGCA	1 cut(s)	821
PfeI	GAWTC	5 cut(s)	110, 221, 235, 527, 922
PfoI	TCCNGGA	1 cut(s)	961
PinAI	ACCGGT	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	274, 568
PleI	GAGTC	4 cut(s)	23, 253, 498, 912
PluTI	GGCGCC	1 cut(s)	106
PpsI	GAGTC	4 cut(s)	23, 253, 498, 912
PpuMI	RGGWCCY	1 cut(s)	630
Psp124BI	GAGCTC	2 cut(s)	367, 864
Psp1406I	AACGTT	1 cut(s)	931
Psp5II	RGGWCCY	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	590, 961
PspGI	CCWGG	2 cut(s)	590, 961
PspN4I	GGNNCC	6 cut(s)	20, 104, 632, 878, 956, 983
PspPI	GGNCC	2 cut(s)	19, 630
PspPPI	RGGWCCY	1 cut(s)	630
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	2 cut(s)	44, 119
RsaNI	GTAC	2 cut(s)	43, 118
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	2 cut(s)	367, 864
SalI	GTCGAC	1 cut(s)	605
SaqAI	TTAA	2 cut(s)	65, 471
SatI	GCNGC	2 cut(s)	273, 567
Sau3AI	GATC	3 cut(s)	307, 556, 807
Sau96I	GGNCC	2 cut(s)	19, 630
SchI	GAGTC	4 cut(s)	23, 254, 499, 913
ScrFI	CCNGG	3 cut(s)	592, 765, 963
SduI	GDGCHC	4 cut(s)	62, 367, 864, 879
SfcI	CTRYAG	1 cut(s)	889
SfoI	GGCGCC	1 cut(s)	104
SinI	GGWCC	2 cut(s)	19, 630
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	85, 145, 598
SsiI	CCGC	3 cut(s)	270, 453, 894
SspDI	GGCGCC	1 cut(s)	102
SspI	AATATT	1 cut(s)	542
SspMI	CTAG	1 cut(s)	839
SstI	GAGCTC	2 cut(s)	367, 864
StyD4I	CCNGG	3 cut(s)	590, 763, 961
StyI	CCWWGG	2 cut(s)	158, 508
TaaI	ACNGT	5 cut(s)	205, 745, 772, 803, 990
TaiI	ACGT	1 cut(s)	934
TaqI	TCGA	3 cut(s)	384, 606, 618
TasI	AATT	3 cut(s)	85, 145, 598
TfiI	GAWTC	5 cut(s)	110, 221, 235, 527, 922
Tru1I	TTAA	2 cut(s)	65, 471
Tru9I	TTAA	2 cut(s)	65, 471
TscAI	CASTG	4 cut(s)	210, 488, 750, 808
TseFI	GTSAC	2 cut(s)	479, 491
TseI	GCWGC	2 cut(s)	272, 566
Tsp45I	GTSAC	2 cut(s)	479, 491
TspDTI	ATGAA	2 cut(s)	206, 693
TspRI	CASTG	4 cut(s)	210, 488, 750, 808
VpaK11BI	GGWCC	2 cut(s)	19, 630
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.