Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Reverse (-)

55585095 .. 55591287

Gene Structure 6193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0404200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGGAAGAATGTCTGGTCGGCAAGACAGGAGCATCTCTGGGATCGATGGTCAAGGAATGGCTGGTGGAAAACCGGTTCAACGGGTCGGATCACACCCTTTAGCAGCGCTGGGTTTAGGGGTCGGGGCGATGTAAACTTTGATGTGCGACGAGCGGGGATCGATCTGCGCATGGATGTTTGCAGGCGGGATTGGAGATTGTTCTGGTTGGGATTGATTGCAGGCGGCGATGGAGATCGATCTGCTCTGTGTGGATCGGTGGTTCGCAGGTTGAGATCGGAGATCGGTCTGGTCCGGCATGTGGCCAATAGGAATCGTCCGCTCAGTTCAAGCATGTGGTTTGGGATCGACGTTGTTGCTGCGACGGTGGGGAAGATTCGACGGTGGCCGTGGTCTGGTGTGGACGGTGGTGCGATGTCAGGGAGTGCTTGTAGTATGAGGCTGGCAGGGATGGAGGACACGACGGAGCTGCTGGAGAAGAAGCAAGCGTCGGAAATTTCGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGCTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTGTTTCAGTAAGGATCAAAGAACTTGCAGTTTTATATCAATCACTTAATCTTCAGAAACAAAGGAGAAGAAATCCTGGAAGGAGTTTGATTATTGATAGGGAAGCTAACATTGAACCAGCAATGTCATCACATACGGTGCACAACCCAACAAGCAGAAAACTGACTGAAGCAGCATGTTATTGCAATTCTTGCTTCACTTTTTGTTTAGATATTACTGGAGCAAGCAATTTTTTGATAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

277

Amino Acids

31.07

Weight (kDa)

10.04

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	258
AccBSI	CCGCTC	2 cut(s)	155, 322
AciI	CCGC	4 cut(s)	155, 187, 225, 320
AclWI	GGATC	6 cut(s)	51, 98, 167, 262, 353, 611
AcoI	YGGCCR	2 cut(s)	303, 386
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	3 cut(s)	594, 626, 777
AfeI	AGCGCT	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	301, 395
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	81, 330, 704
AjnI	CCWGG	1 cut(s)	664
AloI	GAACNNNNNNTCC	4 cut(s)	61, 93, 246, 278
AluBI	AGCT	3 cut(s)	469, 510, 695
AluI	AGCT	3 cut(s)	469, 510, 695
Alw21I	GWGCWC	1 cut(s)	732
Alw44I	GTGCAC	1 cut(s)	728
AlwI	GGATC	6 cut(s)	51, 98, 167, 262, 353, 611
Aor51HI	AGCGCT	1 cut(s)	109
AoxI	GGCC	2 cut(s)	303, 386
ApaLI	GTGCAC	1 cut(s)	728
ApeKI	GCWGC	4 cut(s)	105, 359, 469, 761
ApoI	RAATTY	1 cut(s)	495
AsiGI	ACCGGT	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	110, 171
AspS9I	GGNCC	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	732
BalI	TGGCCA	1 cut(s)	305
BauI	CACGAG	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	4 cut(s)	117, 346, 456, 773
BccI	CCATC	4 cut(s)	42, 224, 445, 556
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	4 cut(s)	338, 372, 451, 485
BciT130I	CCWGG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	258
BisI	GCNGC	5 cut(s)	106, 226, 360, 470, 762
BlsI	GCNGC	5 cut(s)	107, 227, 361, 471, 763
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	2 cut(s)	494, 828
Bpu14I	TTCGAA	1 cut(s)	500
Bsa29I	ATCGAT	3 cut(s)	46, 162, 238
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 395
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	811
Bse3DI	GCAATG	2 cut(s)	567, 717
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	666
BseCI	ATCGAT	3 cut(s)	46, 162, 238
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	181, 456
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	301, 395
BseMI	GCAATG	2 cut(s)	567, 717
BseMII	CTCAG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	811
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	4 cut(s)	117, 346, 456, 773
BseYI	CCCAGC	1 cut(s)	110
BshFI	GGCC	2 cut(s)	305, 388
BshTI	ACCGGT	1 cut(s)	74
BshVI	ATCGAT	3 cut(s)	46, 162, 238
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	2 cut(s)	75, 295
BslI	CCNNNNNNNGG	2 cut(s)	301, 395
BsnI	GGCC	2 cut(s)	305, 388
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	732
BspACI	CCGC	4 cut(s)	155, 187, 225, 320
BspANI	GGCC	2 cut(s)	305, 388
BspCNI	CTCAG	1 cut(s)	336
BspDI	ATCGAT	3 cut(s)	46, 162, 238
BspMI	ACCTGC	1 cut(s)	258
BspPI	GGATC	6 cut(s)	51, 98, 167, 262, 353, 611
BspT104I	TTCGAA	1 cut(s)	500
BsrBI	CCGCTC	2 cut(s)	155, 322
BsrDI	GCAATG	2 cut(s)	567, 717
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	811
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	389
BssSI	CACGAG	1 cut(s)	534
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	4 cut(s)	367, 384, 407, 727
BstAPI	GCANNNNNTGC	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	5 cut(s)	185, 223, 444, 486, 814
BstDEI	CTNAG	2 cut(s)	323, 511
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	181, 456
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	780
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	3 cut(s)	302, 337, 768
BstSCI	CCNGG	1 cut(s)	664
BstSLI	GKGCMC	1 cut(s)	732
BstV1I	GCAGC	4 cut(s)	117, 346, 456, 773
Bsu15I	ATCGAT	3 cut(s)	46, 162, 238
BsuRI	GGCC	2 cut(s)	305, 388
BsuTUI	ATCGAT	3 cut(s)	46, 162, 238
BtgI	CCRYGG	1 cut(s)	389
BtgZI	GCGATG	3 cut(s)	144, 243, 428
BtsCI	GGATG	2 cut(s)	181, 456
BveI	ACCTGC	1 cut(s)	258
Cac8I	GCNNGC	5 cut(s)	185, 223, 444, 486, 814
CfoI	GCGC	2 cut(s)	110, 171
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	292
ClaI	ATCGAT	3 cut(s)	46, 162, 238
CseI	GACGC	1 cut(s)	477
CspAI	ACCGGT	1 cut(s)	74
CviAII	CATG	4 cut(s)	172, 299, 334, 765
CviJI	RGCY	9 cut(s)	63, 305, 388, 442, 469, 510, 546, 695, 831
CviKI_1	RGCY	9 cut(s)	63, 305, 388, 442, 469, 510, 546, 695, 831
DdeI	CTNAG	2 cut(s)	323, 511
EaeI	YGGCCR	2 cut(s)	303, 386
Eco47I	GGWCC	1 cut(s)	292
Eco47III	AGCGCT	1 cut(s)	109
Eco57I	CTGAAG	3 cut(s)	594, 626, 777
EcoRII	CCWGG	1 cut(s)	664
FaeI	CATG	4 cut(s)	175, 302, 337, 768
FaiI	YATR	7 cut(s)	173, 300, 335, 437, 625, 723, 766
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FatI	CATG	4 cut(s)	171, 298, 333, 764
FauI	CCCGC	2 cut(s)	148, 180
Fnu4HI	GCNGC	5 cut(s)	106, 226, 360, 470, 762
FokI	GGATG	2 cut(s)	188, 463
Fsp4HI	GCNGC	5 cut(s)	106, 226, 360, 470, 762
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	2 cut(s)	109, 170
GluI	GCNGC	5 cut(s)	106, 226, 360, 470, 762
GsaI	CCCAGC	1 cut(s)	114
GsuI	CTGGAG	2 cut(s)	494, 828
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	305, 388
HapII	CCGG	2 cut(s)	75, 295
HgaI	GACGC	1 cut(s)	477
HhaI	GCGC	2 cut(s)	110, 171
Hin1II	CATG	4 cut(s)	175, 302, 337, 768
Hin6I	GCGC	2 cut(s)	108, 169
HinP1I	GCGC	2 cut(s)	108, 169
HinfI	GANTC	2 cut(s)	313, 376
HpaII	CCGG	2 cut(s)	75, 295
Hpy166II	GTNNAC	3 cut(s)	136, 403, 730
Hpy188I	TCNGA	4 cut(s)	90, 280, 493, 645
Hpy8I	GTNNAC	3 cut(s)	136, 403, 730
Hpy99I	CGWCG	6 cut(s)	153, 353, 367, 384, 466, 493
HpyAV	CCTTC	1 cut(s)	663
HpyCH4III	ACNGT	4 cut(s)	367, 384, 407, 727
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	5 cut(s)	183, 221, 617, 730, 774
HpyF10VI	GCNNNNNNNGC	1 cut(s)	780
HpyF3I	CTNAG	2 cut(s)	323, 511
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	175, 302, 337, 768
HspAI	GCGC	2 cut(s)	108, 169
LmnI	GCTCC	3 cut(s)	31, 466, 809
Lsp1109I	GCAGC	4 cut(s)	117, 346, 456, 773
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	351
MbiI	CCGCTC	2 cut(s)	155, 322
MboII	GAAGA	6 cut(s)	19, 385, 490, 514, 632, 669
MhlI	GDGCHC	1 cut(s)	732
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	4 cut(s)	495, 556, 775, 817
MluNI	TGGCCA	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	68, 471
MnlI	CCTC	5 cut(s)	432, 448, 508, 511, 563
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	1 cut(s)	636
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	2 cut(s)	75, 295
MspR9I	CCNGG	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	780
NlaIII	CATG	4 cut(s)	175, 302, 337, 768
NsbI	TGCGCA	1 cut(s)	170
NspI	RCATGY	3 cut(s)	302, 337, 768
NspV	TTCGAA	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PfeI	GAWTC	2 cut(s)	313, 376
PfoI	TCCNGGA	1 cut(s)	664
PinAI	ACCGGT	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	107, 227, 361, 471, 763
Psp6I	CCWGG	1 cut(s)	664
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	664
PspPI	GGNCC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	5 cut(s)	106, 226, 360, 470, 762
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	1 cut(s)	732
SetI	ASST	6 cut(s)	272, 354, 471, 512, 555, 697
SfaNI	GCATC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	4 cut(s)	495, 556, 775, 817
SsiI	CCGC	4 cut(s)	155, 187, 225, 320
StyD4I	CCNGG	1 cut(s)	664
TaaI	ACNGT	4 cut(s)	367, 384, 407, 727
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	6 cut(s)	46, 162, 238, 348, 379, 500
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	4 cut(s)	495, 556, 775, 817
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	313, 376
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseI	GCWGC	4 cut(s)	105, 359, 469, 761
TspDTI	ATGAA	1 cut(s)	569
TspGWI	ACGGA	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	3 cut(s)	302, 337, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.