Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Forward (+)

33210290 .. 33213643

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38960.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAAAGGGAAAACAGTCATGTTTGTAGGTGATTCACTTGGGAGGAATCAATGGGAGTCTTTGGTTTGCTTGATTTACTCTGCAGCTCCTCAAACCCAAACCCAAATGGTGAAAGGAGATCCACTCTCAACATTCAGTTTCTTGGATTATGGTGTAACCCTGCAATACTACCGAGCTCCATATCTGGTGGACGTTGATATGATGGAGGGAAAGAGAGTTCTGAGGCTTGAGGATATATCGGAGAACAGCCAAGCGTGGCGGTCGGCCGACGTGCTGTCGTTTAACACCGGTCATTGGTGGAGTCACACAGGAGGTCTCCAAGGGTGGGATTACATGGAATCAGGTGGAAAATATTACAAGGATATGGATCGTCTGGCTGCATTGGAGAAAGGAATGAGAACATGGGCAAATTGGGTCGACAAATACATCGATACCACAAGGACCCGAGTTTTCTTTCTCTCCATATCTCCCACACATTACGACCCAAATGAATGGAATGGGGGAGCAACACCAACAACCACCAAGAACTGCTATGGAGAAACATCACCGATGACAGTGAGTGGGGTAGTTTATCCGGGGACGACATATCCAGACCAGATGAGAGTGATGGACAGTGTGATCCGAGAAATGCGCAACCCTCCATTTCTGCTAGACATCACAATGCTTTCGGAGCTCAGAAAAGATGGGCACCCTTCAATCTACAGCGGGGATTTGAGTCCTGGGCAGAGAGCAAATCCTGCACGTTCAGCTGATTGTAGCCATTGGTGCCTTCCTGGTTTGCCAGACACTTGGAACCAACTGTTTTACACTACTTTGCTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

275

Amino Acids

31.19

Weight (kDa)

5.54

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	7 - 285	1.2e-88	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	632
AccB1I	GGYRCC	2 cut(s)	687, 765
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	2 cut(s)	259, 705
AclWI	GGATC	3 cut(s)	113, 375, 613
AcoI	YGGCCR	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	294, 325
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	696
AhdI	GACNNNNNGTC	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	718, 772
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	4 cut(s)	86, 176, 673, 749
AluI	AGCT	4 cut(s)	86, 176, 673, 749
Alw21I	GWGCWC	2 cut(s)	178, 675
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	3 cut(s)	113, 375, 613
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	83, 377
AsiGI	ACCGGT	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	441
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	3 cut(s)	41, 121, 537
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	690
BanI	GGYRCC	2 cut(s)	687, 765
BanII	GRGCYC	2 cut(s)	178, 675
Bbv12I	GWGCWC	2 cut(s)	178, 675
BbvI	GCAGC	2 cut(s)	95, 364
BccI	CCATC	3 cut(s)	196, 601, 677
BciT130I	CCWGG	2 cut(s)	720, 774
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	2 cut(s)	81, 700
BisI	GCNGC	2 cut(s)	84, 378
BlsI	GCNGC	2 cut(s)	85, 379
Bme1390I	CCNGG	3 cut(s)	576, 720, 774
Bme18I	GGWCC	1 cut(s)	441
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	444
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	4 cut(s)	443, 689, 767, 794
BmrFI	CCNGG	3 cut(s)	576, 720, 774
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	576
Bsa29I	ATCGAT	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	319, 575, 719
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 325
Bse118I	RCCGGY	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	720, 774
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	319, 575, 719
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	294, 325
BseMII	CTCAG	2 cut(s)	212, 688
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	690
BseX3I	CGGCCG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	95, 364
BsgI	GTGCAG	1 cut(s)	723
Bsh1285I	CGRYCG	2 cut(s)	263, 267
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	2 cut(s)	687, 765
BshTI	ACCGGT	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	429
BsiEI	CGRYCG	2 cut(s)	263, 267
BsiHKAI	GWGCWC	2 cut(s)	178, 675
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	288, 575
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	294, 325
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	444
Bsp1286I	GDGCHC	3 cut(s)	178, 675, 690
Bsp143I	GATC	3 cut(s)	118, 367, 618
BspACI	CCGC	2 cut(s)	259, 705
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	213, 687
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	4 cut(s)	443, 689, 767, 794
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	3 cut(s)	113, 375, 613
BspT107I	GGYRCC	2 cut(s)	687, 765
BspTNI	GGTCTC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	319, 575, 719
BssMI	GATC	3 cut(s)	118, 367, 618
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	2 cut(s)	720, 774
Bst4CI	ACNGT	4 cut(s)	16, 556, 614, 801
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstDEI	CTNAG	2 cut(s)	221, 674
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	3 cut(s)	121, 370, 621
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	3 cut(s)	118, 367, 618
BstMCI	CGRYCG	2 cut(s)	263, 267
BstMWI	GCNNNNNNNGC	4 cut(s)	670, 737, 746, 765
BstNI	CCWGG	2 cut(s)	720, 774
BstSCI	CCNGG	3 cut(s)	574, 718, 772
BstSFI	CTRYAG	2 cut(s)	81, 700
BstSLI	GKGCMC	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	95, 364
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	2 cut(s)	492, 789
BstYI	RGATCY	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	429
BtrI	CACGTC	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	561, 619
CfoI	GCGC	1 cut(s)	633
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	441
ClaI	ATCGAT	1 cut(s)	429
CspAI	ACCGGT	1 cut(s)	287
CviAII	CATG	3 cut(s)	19, 334, 402
CviJI	RGCY	9 cut(s)	86, 176, 226, 249, 266, 377, 673, 749, 759
CviKI_1	RGCY	9 cut(s)	86, 176, 226, 249, 266, 377, 673, 749, 759
DdeI	CTNAG	2 cut(s)	221, 674
DpnI	GATC	3 cut(s)	120, 369, 620
DpnII	GATC	3 cut(s)	118, 367, 618
DriI	GACNNNNNGTC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	264
EagI	CGGCCG	1 cut(s)	264
Eam1105I	GACNNNNNGTC	1 cut(s)	274
Ecl136II	GAGCTC	2 cut(s)	176, 673
EclXI	CGGCCG	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	178, 675
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	441
Eco52I	CGGCCG	1 cut(s)	264
Eco53kI	GAGCTC	2 cut(s)	176, 673
Eco88I	CYCGRG	1 cut(s)	444
EcoICRI	GAGCTC	2 cut(s)	176, 673
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	718, 772
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	2 cut(s)	178, 675
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	3 cut(s)	22, 337, 405
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	3 cut(s)	18, 333, 401
FauI	CCCGC	1 cut(s)	698
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	84, 378
FriOI	GRGCYC	2 cut(s)	178, 675
Fsp4HI	GCNGC	2 cut(s)	84, 378
FspBI	CTAG	1 cut(s)	650
FspI	TGCGCA	1 cut(s)	632
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	2 cut(s)	84, 378
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	2 cut(s)	288, 575
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	3 cut(s)	22, 337, 405
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	6 cut(s)	32, 46, 56, 301, 338, 715
HpaII	CCGG	2 cut(s)	288, 575
HphI	GGTGA	3 cut(s)	41, 121, 537
Hpy166II	GTNNAC	2 cut(s)	190, 418
Hpy188I	TCNGA	5 cut(s)	222, 241, 623, 670, 677
Hpy188III	TCNNGA	1 cut(s)	590
Hpy8I	GTNNAC	2 cut(s)	190, 418
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	702, 779
HpyCH4III	ACNGT	4 cut(s)	16, 556, 614, 801
HpyCH4IV	ACGT	3 cut(s)	192, 270, 742
HpyCH4V	TGCA	4 cut(s)	83, 163, 380, 740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	670, 737, 746, 765
HpyF3I	CTNAG	2 cut(s)	221, 674
HpySE526I	ACGT	3 cut(s)	192, 270, 742
Hsp92II	CATG	3 cut(s)	22, 337, 405
HspAI	GCGC	1 cut(s)	631
Kzo9I	GATC	3 cut(s)	118, 367, 618
LmnI	GCTCC	4 cut(s)	91, 181, 503, 670
Lsp1109I	GCAGC	2 cut(s)	95, 364
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	3 cut(s)	192, 270, 742
MaeIII	GTNAC	2 cut(s)	154, 302
MalI	GATC	3 cut(s)	120, 369, 620
MboI	GATC	3 cut(s)	118, 367, 618
MboII	GAAGA	1 cut(s)	811
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	3 cut(s)	178, 675, 690
MluCI	AATT	1 cut(s)	409
MlyI	GAGTC	3 cut(s)	65, 310, 724
MnlI	CCTC	7 cut(s)	36, 99, 199, 216, 223, 305, 648
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	2 cut(s)	705, 749
MspI	CCGG	2 cut(s)	288, 575
MspR9I	CCNGG	3 cut(s)	576, 720, 774
MvaI	CCWGG	2 cut(s)	720, 774
MwoI	GCNNNNNNNGC	4 cut(s)	670, 737, 746, 765
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	3 cut(s)	118, 367, 618
NlaIII	CATG	3 cut(s)	22, 337, 405
NlaIV	GGNNCC	4 cut(s)	443, 689, 767, 794
NmuCI	GTSAC	1 cut(s)	302
NsbI	TGCGCA	1 cut(s)	632
PfeI	GAWTC	3 cut(s)	32, 46, 338
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	85, 379
PleI	GAGTC	3 cut(s)	64, 309, 723
PpsI	GAGTC	3 cut(s)	64, 309, 723
PpuMI	RGGWCCY	1 cut(s)	441
Psp124BI	GAGCTC	2 cut(s)	178, 675
Psp5II	RGGWCCY	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	718, 772
PspGI	CCWGG	2 cut(s)	718, 772
PspN4I	GGNNCC	4 cut(s)	443, 689, 767, 794
PspPI	GGNCC	1 cut(s)	441
PspPPI	RGGWCCY	1 cut(s)	441
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	749
RseI	CAYNNNNRTG	1 cut(s)	659
SacI	GAGCTC	2 cut(s)	178, 675
SalI	GTCGAC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	84, 378
Sau3AI	GATC	3 cut(s)	118, 367, 618
Sau96I	GGNCC	1 cut(s)	441
SchI	GAGTC	3 cut(s)	65, 310, 724
ScrFI	CCNGG	3 cut(s)	576, 720, 774
SduI	GDGCHC	3 cut(s)	178, 675, 690
SfcI	CTRYAG	2 cut(s)	81, 700
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	409
SsiI	CCGC	2 cut(s)	259, 705
SspI	AATATT	1 cut(s)	353
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	2 cut(s)	178, 675
StyD4I	CCNGG	3 cut(s)	574, 718, 772
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	4 cut(s)	16, 556, 614, 801
TaiI	ACGT	3 cut(s)	195, 273, 745
TaqI	TCGA	2 cut(s)	417, 429
TasI	AATT	1 cut(s)	409
TfiI	GAWTC	3 cut(s)	32, 46, 338
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	561, 619
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	83, 377
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	17, 504
TspRI	CASTG	2 cut(s)	561, 619
VpaK11BI	GGWCC	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.