Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Reverse (-)

3856832 .. 3860790

Gene Structure 3959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G054900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCTCTTTTCTGTTCCCAATCTATTGGTTCATGTTTAACTATTCTTTGCCTGGTTTTGGTCCAATGCCGCTCAGCTTTGATACTGAGCATGAAGAAGCACCACCACAGCTACCACCACCACAGAACAGCTCCAATGTTCCAAACCAACCAAAGCAATTGTGCTTTGTTTGCAGGCACTTGGGTCCAAGATGACGATTACCCAATGTACCAATCTTCTGAGTGTCCATTAATCATAGACCCTGAGTTCAACTGTCAAATGTACGGCCGCCCAGACACTGGCTACCTCAAGTACAGATGGAGACCCCTCAATTGTGAGCTCCCAAGGTTCAATGGGCTTGAGTTTTTGGACAAAATGAGAGGGAAAACAGTGATGTTTGTAGGTGACTCGCTTGGGAGGAATCAATGGGAGTCTTTGGTTTGCTTGATTTACTCTGCAGCTCCTCAAACCCAGACACAAATGGTCAAGGGAGATCCACTCTCAACATTTAGCTTCTTGGACTACGGTGTGACAATACAATTCTATCGAGCTCCATATCTGGTCGACATAGATATGATGCAAGGAAAGAGAGTTCTAAGGCTTGAGGACATTTCCGAGAACAGCAAGGCGTGGCGGAACGCCGATGTGCTGTCATTTAACACCGGTCACTGGTGGAGCCACAATGGAGGTCTCCAGGGGTGGGATTACATGGAATCAGGAGGAAAATATTACCGAGATATGGATCGTTTGGCTGCTTTGGAGAAAGGGATGAGAACATGGGCTAATTGGGTCGACTCAAACATCGACACCACAAGGACCCGAGTTTTCTTCCTTTCCATATCTCCCACACACTACAACCCAAATGAATGGAATGGGGGAGCAACTCCTGCAACCACCAAGAACTGCTATGGGGAAACAGCACCAATGACAATAAGTGGAGTAACATATCCAGGGACAACATATCCAGACCAAATGAGAGTGGTGGACAATGTGATCAGGGGCATGAGCAACCCTGCATCTTTGCTAGACATCACAATGCTTTCAGAGCTTAGAAAAGATGGGCACCCTTCAATCTACAGTGGGGATTTGAGCCCTCAGGAGAGAGCCAATCCTGAACGCTCAGCAGATTGTAGCCACTGGTGCCTTCCTGGACTGCCAGACACTTGGAACCAGCTCTTTTACACAGCTTTGCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

393

Amino Acids

44.77

Weight (kDa)

6.12

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1041, 1119
AccB7I	CCANNNNNTGG	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	72
AccI	GTMKAC	2 cut(s)	543, 771
AciI	CCGC	3 cut(s)	70, 268, 613
AclWI	GGATC	2 cut(s)	467, 729
AcoI	YGGCCR	1 cut(s)	265
AfaI	GTAC	3 cut(s)	209, 263, 293
AfiI	CCNNNNNNNGG	5 cut(s)	58, 278, 648, 679, 718
AgeI	ACCGGT	1 cut(s)	641
AgsI	TTSAA	3 cut(s)	250, 331, 1050
AjnI	CCWGG	4 cut(s)	51, 672, 928, 1126
AloI	GAACNNNNNNTCC	2 cut(s)	555, 587
Alw21I	GWGCWC	2 cut(s)	321, 532
Alw26I	GTCTC	2 cut(s)	295, 674
AlwI	GGATC	2 cut(s)	467, 729
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	798
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	437, 731
AseI	ATTAAT	1 cut(s)	230
AsiGI	ACCGGT	1 cut(s)	641
AspS9I	GGNCC	3 cut(s)	61, 184, 795
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	798
AvaII	GGWCC	3 cut(s)	61, 184, 795
AxyI	CCTNAGG	1 cut(s)	1074
BaeGI	GKGCMC	1 cut(s)	1044
BanI	GGYRCC	2 cut(s)	1041, 1119
BanII	GRGCYC	3 cut(s)	321, 532, 1073
Bbv12I	GWGCWC	2 cut(s)	321, 532
BbvI	GCAGC	2 cut(s)	449, 718
BccI	CCATC	2 cut(s)	291, 1031
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	4 cut(s)	53, 674, 930, 1128
BclI	TGATCA	1 cut(s)	972
BcoDI	GTCTC	2 cut(s)	295, 674
BfaI	CTAG	1 cut(s)	1004
BfmI	CTRYAG	2 cut(s)	435, 1054
BisI	GCNGC	4 cut(s)	70, 268, 438, 732
BlpI	GCTNAGC	2 cut(s)	73, 1099
BlsI	GCNGC	4 cut(s)	71, 269, 439, 733
Bme1390I	CCNGG	4 cut(s)	53, 674, 930, 1128
Bme18I	GGWCC	3 cut(s)	61, 184, 795
BmeT110I	CYCGRG	1 cut(s)	798
BmgT120I	GGNCC	3 cut(s)	61, 184, 795
BmiI	GGNNCC	6 cut(s)	185, 656, 797, 1043, 1121, 1148
BmrFI	CCNGG	4 cut(s)	53, 674, 930, 1128
BmsI	GCATC	2 cut(s)	546, 1004
BplI	GAGNNNNNCTC	2 cut(s)	462, 494
BpmI	CTGGAG	1 cut(s)	656
Bpu1102I	GCTNAGC	2 cut(s)	73, 1099
BpuEI	CTTGAG	3 cut(s)	272, 359, 602
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	2 cut(s)	295, 674
BsaJI	CCNNGG	3 cut(s)	323, 673, 929
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 278, 648, 679, 718
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	3 cut(s)	283, 653, 1121
Bse21I	CCTNAGG	1 cut(s)	1074
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	4 cut(s)	53, 674, 930, 1128
BseDI	CCNNGG	3 cut(s)	323, 673, 929
BseGI	GGATG	1 cut(s)	753
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	5 cut(s)	58, 278, 648, 679, 718
BseMII	CTCAG	6 cut(s)	77, 87, 210, 234, 1088, 1113
BseNI	ACTGG	3 cut(s)	283, 653, 1121
BseRI	GAGGAG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	1044
BseX3I	CGGCCG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	449, 718
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	2 cut(s)	1041, 1119
BshTI	ACCGGT	1 cut(s)	641
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	321, 532
BsiHKCI	CYCGRG	1 cut(s)	798
BsiSI	CCGG	1 cut(s)	642
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	5 cut(s)	58, 278, 648, 679, 718
BsmAI	GTCTC	2 cut(s)	295, 674
BsmFI	GGGAC	1 cut(s)	946
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	2 cut(s)	295, 674
BsoBI	CYCGRG	1 cut(s)	798
Bsp1286I	GDGCHC	4 cut(s)	321, 532, 1044, 1073
Bsp143I	GATC	3 cut(s)	472, 721, 972
Bsp1720I	GCTNAGC	2 cut(s)	73, 1099
BspACI	CCGC	3 cut(s)	70, 268, 613
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	6 cut(s)	78, 86, 211, 235, 1087, 1112
BspLI	GGNNCC	6 cut(s)	185, 656, 797, 1043, 1121, 1148
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	2 cut(s)	467, 729
BspT107I	GGYRCC	2 cut(s)	1041, 1119
BspTNI	GGTCTC	2 cut(s)	295, 674
BsrBI	CCGCTC	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	3 cut(s)	283, 653, 1121
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	3 cut(s)	323, 673, 929
BssMI	GATC	3 cut(s)	472, 721, 972
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	4 cut(s)	53, 674, 930, 1128
Bst4CI	ACNGT	4 cut(s)	254, 370, 506, 1058
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	8 cut(s)	73, 86, 219, 243, 575, 1028, 1074, 1099
BstF5I	GGATG	1 cut(s)	753
BstKTI	GATC	3 cut(s)	475, 724, 975
BstMAI	GTCTC	2 cut(s)	295, 674
BstMBI	GATC	3 cut(s)	472, 721, 972
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 866, 1024, 1119
BstNI	CCWGG	4 cut(s)	53, 674, 930, 1128
BstSCI	CCNGG	4 cut(s)	51, 672, 928, 1126
BstSFI	CTRYAG	2 cut(s)	435, 1054
BstSLI	GKGCMC	1 cut(s)	1044
BstV1I	GCAGC	2 cut(s)	449, 718
BstX2I	RGATCY	1 cut(s)	472
BstXI	CCANNNNNNTGG	3 cut(s)	26, 846, 1143
BstYI	RGATCY	1 cut(s)	472
BstZI	CGGCCG	1 cut(s)	265
Bsu36I	CCTNAGG	1 cut(s)	1074
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	753
BtsIMutI	CAGTG	5 cut(s)	276, 375, 646, 1063, 1114
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	3 cut(s)	61, 184, 795
Csp6I	GTAC	3 cut(s)	208, 262, 292
CspAI	ACCGGT	1 cut(s)	641
CviAII	CATG	5 cut(s)	33, 91, 688, 756, 982
CviQI	GTAC	3 cut(s)	208, 262, 292
DdeI	CTNAG	8 cut(s)	73, 86, 219, 243, 575, 1028, 1074, 1099
DpnI	GATC	3 cut(s)	474, 723, 974
DpnII	GATC	3 cut(s)	472, 721, 972
EaeI	YGGCCR	1 cut(s)	265
EagI	CGGCCG	1 cut(s)	265
EciI	GGCGGA	1 cut(s)	628
Ecl136II	GAGCTC	2 cut(s)	319, 530
EclXI	CGGCCG	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	323
Eco24I	GRGCYC	3 cut(s)	321, 532, 1073
Eco31I	GGTCTC	2 cut(s)	295, 674
Eco47I	GGWCC	3 cut(s)	61, 184, 795
Eco52I	CGGCCG	1 cut(s)	265
Eco53kI	GAGCTC	2 cut(s)	319, 530
Eco81I	CCTNAGG	1 cut(s)	1074
Eco88I	CYCGRG	1 cut(s)	798
EcoICRI	GAGCTC	2 cut(s)	319, 530
EcoO109I	RGGNCCY	1 cut(s)	795
EcoRII	CCWGG	4 cut(s)	51, 672, 928, 1126
EcoT14I	CCWWGG	1 cut(s)	323
EcoT38I	GRGCYC	3 cut(s)	321, 532, 1073
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	5 cut(s)	36, 94, 691, 759, 985
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	5 cut(s)	32, 90, 687, 755, 981
FbaI	TGATCA	1 cut(s)	972
FblI	GTMKAC	2 cut(s)	543, 771
Fnu4HI	GCNGC	4 cut(s)	70, 268, 438, 732
FokI	GGATG	1 cut(s)	760
FriOI	GRGCYC	3 cut(s)	321, 532, 1073
Fsp4HI	GCNGC	4 cut(s)	70, 268, 438, 732
FspBI	CTAG	1 cut(s)	1004
GluI	GCNGC	4 cut(s)	70, 268, 438, 732
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	642
Hin1II	CATG	5 cut(s)	36, 94, 691, 759, 985
HincII	GTYRAC	2 cut(s)	544, 772
HindII	GTYRAC	2 cut(s)	544, 772
HinfI	GANTC	5 cut(s)	386, 400, 410, 692, 773
HpaII	CCGG	1 cut(s)	642
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	544, 772, 964
Hpy188I	TCNGA	3 cut(s)	220, 595, 1024
Hpy188III	TCNNGA	4 cut(s)	696, 944, 1076, 1091
Hpy8I	GTNNAC	3 cut(s)	544, 772, 964
HpyAV	CCTTC	2 cut(s)	1056, 1133
HpyCH4III	ACNGT	4 cut(s)	254, 370, 506, 1058
HpyCH4V	TGCA	5 cut(s)	173, 437, 559, 869, 995
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 866, 1024, 1119
HpyF3I	CTNAG	8 cut(s)	73, 86, 219, 243, 575, 1028, 1074, 1099
Hsp92II	CATG	5 cut(s)	36, 94, 691, 759, 985
Ksp22I	TGATCA	1 cut(s)	972
Kzo9I	GATC	3 cut(s)	472, 721, 972
LmnI	GCTCC	6 cut(s)	136, 324, 445, 535, 654, 857
Lsp1109I	GCAGC	2 cut(s)	449, 718
LweI	GCATC	2 cut(s)	546, 1004
MaeI	CTAG	1 cut(s)	1004
MaeIII	GTNAC	4 cut(s)	383, 508, 644, 919
MalI	GATC	3 cut(s)	474, 723, 974
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	3 cut(s)	472, 721, 972
MboII	GAAGA	3 cut(s)	106, 207, 799
MfeI	CAATTG	2 cut(s)	157, 310
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	4 cut(s)	321, 532, 1044, 1073
MluCI	AATT	4 cut(s)	157, 310, 518, 763
MlyI	GAGTC	3 cut(s)	380, 419, 767
MnlI	CCTC	9 cut(s)	296, 317, 353, 390, 453, 577, 659, 692, 1083
MseI	TTAA	4 cut(s)	38, 230, 636, 1177
MslI	CAYNNNNRTG	2 cut(s)	551, 1013
MspI	CCGG	1 cut(s)	642
MspR9I	CCNGG	4 cut(s)	53, 674, 930, 1128
MunI	CAATTG	2 cut(s)	157, 310
MvaI	CCWGG	4 cut(s)	53, 674, 930, 1128
MwoI	GCNNNNNNNGC	4 cut(s)	170, 866, 1024, 1119
NdeII	GATC	3 cut(s)	472, 721, 972
NlaIII	CATG	5 cut(s)	36, 94, 691, 759, 985
NlaIV	GGNNCC	6 cut(s)	185, 656, 797, 1043, 1121, 1148
NmuCI	GTSAC	3 cut(s)	383, 508, 644
PfeI	GAWTC	2 cut(s)	400, 692
PflMI	CCANNNNNTGG	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	1126
PinAI	ACCGGT	1 cut(s)	641
PkrI	GCNGC	4 cut(s)	71, 269, 439, 733
PleI	GAGTC	3 cut(s)	380, 418, 767
PpsI	GAGTC	3 cut(s)	380, 418, 767
PpuMI	RGGWCCY	1 cut(s)	795
PshBI	ATTAAT	1 cut(s)	230
Psp124BI	GAGCTC	2 cut(s)	321, 532
Psp5II	RGGWCCY	1 cut(s)	795
Psp6I	CCWGG	4 cut(s)	51, 672, 928, 1126
PspGI	CCWGG	4 cut(s)	51, 672, 928, 1126
PspN4I	GGNNCC	6 cut(s)	185, 656, 797, 1043, 1121, 1148
PspPI	GGNCC	3 cut(s)	61, 184, 795
PspPPI	RGGWCCY	1 cut(s)	795
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	3 cut(s)	209, 263, 293
RsaNI	GTAC	3 cut(s)	208, 262, 292
RseI	CAYNNNNRTG	2 cut(s)	551, 1013
SacI	GAGCTC	2 cut(s)	321, 532
SalI	GTCGAC	2 cut(s)	542, 770
SaqAI	TTAA	4 cut(s)	38, 230, 636, 1177
SatI	GCNGC	4 cut(s)	70, 268, 438, 732
Sau3AI	GATC	3 cut(s)	472, 721, 972
Sau96I	GGNCC	3 cut(s)	61, 184, 795
SchI	GAGTC	3 cut(s)	380, 419, 767
ScrFI	CCNGG	4 cut(s)	53, 674, 930, 1128
SduI	GDGCHC	4 cut(s)	321, 532, 1044, 1073
SfaNI	GCATC	2 cut(s)	546, 1004
SfcI	CTRYAG	2 cut(s)	435, 1054
SinI	GGWCC	3 cut(s)	61, 184, 795
SmiMI	CAYNNNNRTG	2 cut(s)	551, 1013
SmlI	CTYRAG	3 cut(s)	287, 338, 581
SmoI	CTYRAG	3 cut(s)	287, 338, 581
Sse9I	AATT	4 cut(s)	157, 310, 518, 763
SsiI	CCGC	3 cut(s)	70, 268, 613
SspI	AATATT	1 cut(s)	707
SspMI	CTAG	1 cut(s)	1004
SstI	GAGCTC	2 cut(s)	321, 532
StyD4I	CCNGG	4 cut(s)	51, 672, 928, 1126
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	4 cut(s)	254, 370, 506, 1058
TaqI	TCGA	4 cut(s)	526, 543, 771, 783
TasI	AATT	4 cut(s)	157, 310, 518, 763
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	2 cut(s)	72, 270
TfiI	GAWTC	2 cut(s)	400, 692
Tru1I	TTAA	4 cut(s)	38, 230, 636, 1177
Tru9I	TTAA	4 cut(s)	38, 230, 636, 1177
TscAI	CASTG	5 cut(s)	283, 375, 653, 1063, 1121
TseFI	GTSAC	3 cut(s)	383, 508, 644
TseI	GCWGC	2 cut(s)	437, 731
Tsp45I	GTSAC	3 cut(s)	383, 508, 644
TspDTI	ATGAA	3 cut(s)	21, 107, 858
TspRI	CASTG	5 cut(s)	283, 375, 653, 1063, 1121
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	3 cut(s)	61, 184, 795
VspI	ATTAAT	1 cut(s)	230
XmiI	GTMKAC	2 cut(s)	543, 771
XspI	CTAG	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.