Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006318

Physical Location & Seq

Genomic Coordinates Forward (+)

55562255 .. 55563874

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0404000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAAATAAAAGCAGCGTGGCTGCCTCTTCAAGGGGATCTTTCGGGTTGCTCCAGCGAATCGGTTGCTGGCTTGCAACTAGGCGGCAGGCCAGGAGTGGACTTGTGTGGTTCTGATGGGTTGCGCTCTGTGGCTATGTGCAACTTCAAGCCAGGCGTTACTGTGATGGGGGCTTTGGATTTCACAATGGTGGTTGTTAGGTGTGCTGATTTTTGCGGTGGCAGCAAGGCTAGGGCTCTGGTGATGGAGGATTCCGGCAGTGGCGGTGTTCCGAGTGTTTCTCTAGGTCTGGAACAACGCCGCGTCACCTTCGATGACAATGAAGGCTTTGAATTCTCCAACGTCGCCGTTAAACCCTCCTGGTCTTTAGAATCCGATTGCAGCAAAGAGAATCTGAGCCCCATTCCTAAAAGCTCTCTTTTCACGGTGTCTACGATGCCATTTAAGCCACTGAAAGGAAACTCGCGCCGGCTATCGGTGGCGCCGAAGAAGATGGTGTTTGAGGTTGAAGAAGAGAAAGGTCGAGACCTGGGGAAGATCGATTCGGAGATTGAGGAAATCGAGAAGGAGATAAGCCGATTGAATTCGAGGCTGGAATTGCGGGAACTGGAGAAGGCCCAGAAGGTGGTGAAGAAGCGCGGCAGAGTTGTGGCGGCGAATTTCATGGAGCCTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0008150 GO:0008374 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

225

Amino Acids

24.38

Weight (kDa)

7.52

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58600 AT5G58600
fragaria_vesca	FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960 FvH4_3g38960
malus_domestica	MD03G1066200.v1.1 MD11G1070900.v1.1
prunus_persica	Prupe.6G054900_v2.0.a1 Prupe.6G054900_v2.0.a1
pyrus_communis	pycom03g05290 pycom11g05930
rosa_chinensis	RchiOBHm_Chr5g0070191
rosa_laevigata	RLG00000036119
rosa_multiflora	Rmu_sc0002156.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010920
rosa_rugosa	Rorug05G0403900 Rorug05G0403900 Rorug05G0404000 Rorug05G0404100 Rorug05G0404200
rosa_samantha	Rh5AG459700 Rh5BG478200 Rh5CG502200 Rh5DG490100
rosa_wichuraiana	Rw5G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AccB7I	CCANNNNNTGG	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	3 cut(s)	303, 466, 639
AciI	CCGC	7 cut(s)	84, 216, 264, 301, 601, 639, 653
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	332, 583, 658
AcyI	GRCGYC	1 cut(s)	482
AfiI	CCNNNNNNNGG	4 cut(s)	32, 455, 475, 625
AgsI	TTSAA	5 cut(s)	32, 148, 332, 509, 583
AjnI	CCWGG	4 cut(s)	91, 151, 359, 528
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	1 cut(s)	414
AluI	AGCT	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	2 cut(s)	89, 615
ApeKI	GCWGC	4 cut(s)	14, 22, 222, 381
ApoI	RAATTY	3 cut(s)	332, 583, 658
AspLEI	GCGC	4 cut(s)	126, 468, 484, 639
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	3 cut(s)	253, 298, 640
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	2 cut(s)	238, 401
BbvI	GCAGC	4 cut(s)	9, 26, 234, 393
BccI	CCATC	4 cut(s)	110, 160, 238, 487
BceAI	ACGGC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	4 cut(s)	93, 153, 361, 530
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	3 cut(s)	80, 231, 284
BfoI	RGCGCY	1 cut(s)	485
BisI	GCNGC	8 cut(s)	15, 23, 85, 223, 301, 382, 640, 654
BlsI	GCNGC	8 cut(s)	16, 24, 86, 224, 302, 383, 641, 655
Bme1390I	CCNGG	4 cut(s)	93, 153, 361, 530
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	2 cut(s)	483, 669
BmrFI	CCNGG	4 cut(s)	93, 153, 361, 530
BmsI	GCATC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpmI	CTGGAG	2 cut(s)	37, 629
Bsa29I	ATCGAT	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	529
BsaXI	ACNNNNNCTCC	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 455, 475, 625
Bse118I	RCCGGY	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	612
BseBI	CCWGG	4 cut(s)	93, 153, 361, 530
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	529
BseLI	CCNNNNNNNGG	4 cut(s)	32, 455, 475, 625
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	612
BseXI	GCAGC	4 cut(s)	9, 26, 234, 393
Bsh1236I	CGCG	3 cut(s)	303, 466, 639
BshFI	GGCC	2 cut(s)	91, 617
BshNI	GGYRCC	1 cut(s)	481
BshVI	ATCGAT	1 cut(s)	540
BsiSI	CCGG	2 cut(s)	255, 469
BslI	CCNNNNNNNGG	4 cut(s)	32, 455, 475, 625
BsmAI	GTCTC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	91, 617
Bso31I	GGTCTC	1 cut(s)	519
Bsp1286I	GDGCHC	2 cut(s)	238, 401
Bsp143I	GATC	2 cut(s)	37, 537
BspACI	CCGC	7 cut(s)	84, 216, 264, 301, 601, 639, 653
BspANI	GGCC	2 cut(s)	91, 617
BspCNI	CTCAG	1 cut(s)	387
BspDI	ATCGAT	1 cut(s)	540
BspFNI	CGCG	3 cut(s)	303, 466, 639
BspLI	GGNNCC	2 cut(s)	483, 669
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	612
BssAI	RCCGGY	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	2 cut(s)	37, 537
BssNI	GRCGYC	1 cut(s)	482
Bst2UI	CCWGG	4 cut(s)	93, 153, 361, 530
Bst4CI	ACNGT	2 cut(s)	163, 427
Bst6I	CTCTTC	2 cut(s)	33, 507
BstACI	GRCGYC	1 cut(s)	482
BstC8I	GCNNGC	4 cut(s)	70, 74, 89, 470
BstDEI	CTNAG	1 cut(s)	395
BstENI	CCTNNNNNAGG	1 cut(s)	30
BstFNI	CGCG	3 cut(s)	303, 466, 639
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	4 cut(s)	126, 468, 484, 639
BstKTI	GATC	2 cut(s)	40, 540
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	2 cut(s)	37, 537
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 445, 598
BstNI	CCWGG	4 cut(s)	93, 153, 361, 530
BstSCI	CCNGG	4 cut(s)	91, 151, 359, 528
BstUI	CGCG	3 cut(s)	303, 466, 639
BstV1I	GCAGC	4 cut(s)	9, 26, 234, 393
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	91, 617
BsuTUI	ATCGAT	1 cut(s)	540
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	265, 449
Cac8I	GCNNGC	4 cut(s)	70, 74, 89, 470
CfoI	GCGC	4 cut(s)	126, 468, 484, 639
Cfr10I	RCCGGY	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	616
ClaI	ATCGAT	1 cut(s)	540
CseI	GACGC	1 cut(s)	292
CviAII	CATG	1 cut(s)	664
DdeI	CTNAG	1 cut(s)	395
DinI	GGCGCC	1 cut(s)	483
DpnI	GATC	2 cut(s)	39, 539
DpnII	GATC	2 cut(s)	37, 537
Eam1104I	CTCTTC	2 cut(s)	33, 507
EarI	CTCTTC	2 cut(s)	33, 507
Eco24I	GRGCYC	2 cut(s)	238, 401
Eco31I	GGTCTC	1 cut(s)	519
EcoNI	CCTNNNNNAGG	1 cut(s)	30
EcoRI	GAATTC	2 cut(s)	332, 583
EcoRII	CCWGG	4 cut(s)	91, 151, 359, 528
EcoT38I	GRGCYC	2 cut(s)	238, 401
EgeI	GGCGCC	1 cut(s)	483
EheI	GGCGCC	1 cut(s)	483
FaeI	CATG	1 cut(s)	667
FaiI	YATR	2 cut(s)	137, 665
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	1 cut(s)	663
FauI	CCCGC	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	8 cut(s)	15, 23, 85, 223, 301, 382, 640, 654
FriOI	GRGCYC	2 cut(s)	238, 401
Fsp4HI	GCNGC	8 cut(s)	15, 23, 85, 223, 301, 382, 640, 654
FspBI	CTAG	3 cut(s)	80, 231, 284
GlaI	GCGC	4 cut(s)	125, 467, 483, 638
GluI	GCNGC	8 cut(s)	15, 23, 85, 223, 301, 382, 640, 654
GsuI	CTGGAG	2 cut(s)	37, 629
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	2 cut(s)	91, 617
HapII	CCGG	2 cut(s)	255, 469
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	4 cut(s)	126, 468, 484, 639
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	1 cut(s)	667
Hin6I	GCGC	4 cut(s)	124, 466, 482, 637
HinP1I	GCGC	4 cut(s)	124, 466, 482, 637
HinfI	GANTC	5 cut(s)	59, 251, 371, 391, 542
HpaII	CCGG	2 cut(s)	255, 469
HphI	GGTGA	3 cut(s)	253, 298, 640
Hpy166II	GTNNAC	2 cut(s)	100, 432
Hpy188I	TCNGA	5 cut(s)	115, 273, 376, 396, 547
Hpy188III	TCNNGA	3 cut(s)	290, 524, 562
Hpy8I	GTNNAC	2 cut(s)	100, 432
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	317, 319, 559, 607, 616
HpyCH4III	ACNGT	2 cut(s)	163, 427
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	76, 141, 381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 445, 598
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	1 cut(s)	667
HspAI	GCGC	4 cut(s)	124, 466, 482, 637
KasI	GGCGCC	1 cut(s)	481
KroI	GCCGGC	1 cut(s)	468
KroNI	GCCGGC	1 cut(s)	470
Kzo9I	GATC	2 cut(s)	37, 537
LmnI	GCTCC	2 cut(s)	56, 667
Lsp1109I	GCAGC	4 cut(s)	9, 26, 234, 393
LweI	GCATC	1 cut(s)	426
MaeI	CTAG	3 cut(s)	80, 231, 284
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	157, 304
MalI	GATC	2 cut(s)	39, 539
MboI	GATC	2 cut(s)	37, 537
MboII	GAAGA	7 cut(s)	20, 499, 502, 521, 524, 547, 643
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	238, 401
MluCI	AATT	4 cut(s)	332, 583, 596, 658
Mly113I	GGCGCC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	36, 241, 367, 496, 547, 582
MroNI	GCCGGC	1 cut(s)	468
MseI	TTAA	2 cut(s)	351, 444
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	2 cut(s)	255, 469
MspR9I	CCNGG	4 cut(s)	93, 153, 361, 530
MvaI	CCWGG	4 cut(s)	93, 153, 361, 530
MvnI	CGCG	3 cut(s)	303, 466, 639
MwoI	GCNNNNNNNGC	3 cut(s)	222, 445, 598
NaeI	GCCGGC	1 cut(s)	470
NarI	GGCGCC	1 cut(s)	482
NdeII	GATC	2 cut(s)	37, 537
NgoMIV	GCCGGC	1 cut(s)	468
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	2 cut(s)	483, 669
NmuCI	GTSAC	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	2 cut(s)	431, 482
PdiI	GCCGGC	1 cut(s)	470
PfeI	GAWTC	5 cut(s)	59, 251, 371, 391, 542
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	8 cut(s)	16, 24, 86, 224, 302, 383, 641, 655
PluTI	GGCGCC	1 cut(s)	485
Psp6I	CCWGG	4 cut(s)	91, 151, 359, 528
PspGI	CCWGG	4 cut(s)	91, 151, 359, 528
PspN4I	GGNNCC	2 cut(s)	483, 669
PspPI	GGNCC	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	351, 444
SatI	GCNGC	8 cut(s)	15, 23, 85, 223, 301, 382, 640, 654
Sau3AI	GATC	2 cut(s)	37, 537
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	4 cut(s)	93, 153, 361, 530
SduI	GDGCHC	2 cut(s)	238, 401
SetI	ASST	9 cut(s)	203, 289, 311, 345, 416, 507, 523, 531, 627
SfaNI	GCATC	1 cut(s)	426
SfoI	GGCGCC	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	332, 583, 596, 658
SsiI	CCGC	7 cut(s)	84, 216, 264, 301, 601, 639, 653
SspDI	GGCGCC	1 cut(s)	481
SspMI	CTAG	3 cut(s)	80, 231, 284
StyD4I	CCNGG	4 cut(s)	91, 151, 359, 528
TaaI	ACNGT	2 cut(s)	163, 427
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	5 cut(s)	312, 523, 540, 561, 587
TasI	AATT	4 cut(s)	332, 583, 596, 658
TauI	GCSGC	4 cut(s)	87, 303, 642, 656
TfiI	GAWTC	5 cut(s)	59, 251, 371, 391, 542
Tru1I	TTAA	2 cut(s)	351, 444
Tru9I	TTAA	2 cut(s)	351, 444
TscAI	CASTG	2 cut(s)	265, 456
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	4 cut(s)	14, 22, 222, 381
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	17, 336, 652
TspRI	CASTG	2 cut(s)	265, 456
Van91I	CCANNNNNTGG	1 cut(s)	625
XagI	CCTNNNNNAGG	1 cut(s)	30
XapI	RAATTY	3 cut(s)	332, 583, 658
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	3 cut(s)	80, 231, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.