AT5G58630

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009893
Physical Location & Seq
Reverse (-)
23696108 .. 23697452
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58630.1

Sequence Viewer

Length: 1119 bp
ATGAAGATGAAGTCATCGCCTTCTCCGGCTAGTTCTCTCTCACTCGGCTCGAAGACTCGGTCATTCGGCTGTATCTCTATCATTCTTCAAAGATTTCTCTGTTCCGGCACCTCTTCTACCTACCCATCTGATCTAATTACTGAACCCAGTTTCAAGTCTCGTGATTTCATCCCCGAGCCACTCAGAGGCAGAGGAGATGGGCCAGGAGCTGTGGCGAGGCTCATGGGTTTGGACTCAATTCCCGTGATCGACAAAACCAGATTTCTCTCAAGGAGCCATTCAGTGAATCATTTGAAGAGGGACGACGATGAGATTCAGGGAAAGCATAGAAGAGTTAAGTCCACTCTTGAGTATGTTGAGCTTGAAGATGATGATTTCTTCATTCTCAGTTTCGAGAAGGATAAAAATGATAAGGAGCTGGGAACTAGAAATTGTAAGAAGAGGAGAGATACTAGAGAGAACCAGAGCAAAACAGAGGATCAAACACACCTAGAGGGTAAAGAGAACAACATCAATGCCATGAACGTTTCACCAGGACGTGAGAGGCTTGAGATTGGAGAACTGATGCAGCGTAGAAAGGAGAAACGTAAGAGCAGAAGAAAACGAAAAGAAACTAAGTTGAGACAGAACATCGAGAAGGAGAATTGGGTCCAAAGTAATGGTTGTTGGTCCAAAGAAGAAGATTTAGTAAATTGTGAAGTGAGATCAACAAAAGAAGAAGAAGAGTGTGGAAGCTGCGATGATTCGAGCCCTGTCTCGGTTCTTGATTATGACCGGTATGCTGGTGTTCGAGTAACTCCATCACCAGGAAACATTTCAAGAAGACGGTTGTCTTCAGAACTTGAATCTAGTAAGCTCAATGAAACGATTGAACAAGATCACATCACATTGACAAGTAGATCAAAAGACCAAGAAATCCGACTTCATGGCTACCAAGAGATGTGGCTCATGATCTGCAAACTCACTGTATCTGACCTTGAAGGTTCAGATTGGTTTAACGGAAAAGCTTTAAAGCTCGAAGATATAGAAGGAATCATAAGCGAAGATATAGTCTCAAACATCTTAGATCAACTCTTAGAAGAAACAATTACAACACTTTCCCTAACTTCACAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

372

Amino Acids

42.54

Weight (kDa)

6.03

Isoelectric Point (pI)

71.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AclI AACGTT 1 cut(s) 525
AclWI GGATC 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 819
AfiI CCNNNNNNNGG 3 cut(s) 185, 757, 806
AgeI ACCGGT 1 cut(s) 774
AgsI TTSAA 8 cut(s) 89, 154, 295, 365, 819, 845, 872, 980
AjiI CACGTC 1 cut(s) 539
AjnI CCWGG 3 cut(s) 202, 532, 805
AluBI AGCT 7 cut(s) 209, 361, 418, 735, 856, 1007, 1015
AluI AGCT 7 cut(s) 209, 361, 418, 735, 856, 1007, 1015
Alw26I GTCTC 4 cut(s) 162, 616, 760, 1057
AlwI GGATC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 568, 735
ArsI GACNNNNNNTTYG 4 cut(s) 44, 76, 1035, 1067
AsiGI ACCGGT 1 cut(s) 774
Asp700I GAANNNNTTC 1 cut(s) 814
AspS9I GGNCC 3 cut(s) 200, 649, 669
AsuHPI GGTGA 2 cut(s) 522, 795
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 2 cut(s) 649, 669
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 752
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 3 cut(s) 59, 825, 829
BbvI GCAGC 2 cut(s) 580, 722
BccI CCATC 3 cut(s) 133, 191, 808
BciT130I CCWGG 3 cut(s) 204, 534, 807
BcoDI GTCTC 4 cut(s) 162, 616, 760, 1057
BfaI CTAG 5 cut(s) 30, 426, 453, 491, 849
BisI GCNGC 2 cut(s) 569, 736
BlsI GCNGC 2 cut(s) 570, 737
Bme1390I CCNGG 3 cut(s) 204, 534, 807
Bme18I GGWCC 2 cut(s) 649, 669
BmeT110I CYCGRG 1 cut(s) 173
BmgBI CACGTC 1 cut(s) 539
BmgT120I GGNCC 3 cut(s) 200, 649, 669
BmiI GGNNCC 3 cut(s) 109, 275, 650
BmrFI CCNGG 3 cut(s) 204, 534, 807
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 141
BoxI GACNNNNGTC 1 cut(s) 829
BpiI GAAGAC 3 cut(s) 59, 825, 829
BpuEI CTTGAG 3 cut(s) 253, 368, 569
BsaWI WCCGGW 1 cut(s) 774
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 757, 806
Bse118I RCCGGY 1 cut(s) 774
Bse1I ACTGG 1 cut(s) 147
BseBI CCWGG 3 cut(s) 204, 534, 807
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 185, 757, 806
BseMII CTCAG 2 cut(s) 196, 400
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 207, 457
BseXI GCAGC 2 cut(s) 580, 722
BseYI CCCAGC 1 cut(s) 418
BshFI GGCC 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 774
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 3 cut(s) 26, 105, 775
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 3 cut(s) 185, 757, 806
BsmAI GTCTC 4 cut(s) 162, 616, 760, 1057
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 752
Bsp143I GATC 8 cut(s) 130, 246, 478, 704, 877, 899, 951, 1066
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 2 cut(s) 195, 399
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 3 cut(s) 109, 275, 650
BspPI GGATC 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 774
BsrI ACTGG 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 774
BssMI GATC 8 cut(s) 130, 246, 478, 704, 877, 899, 951, 1066
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 3 cut(s) 204, 534, 807
Bst4CI ACNGT 2 cut(s) 828, 967
Bst6I CTCTTC 5 cut(s) 118, 290, 325, 434, 717
BstDEI CTNAG 5 cut(s) 182, 386, 615, 1063, 1075
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 8 cut(s) 133, 249, 481, 707, 880, 902, 954, 1069
BstMAI GTCTC 4 cut(s) 162, 616, 760, 1057
BstMBI GATC 8 cut(s) 130, 246, 478, 704, 877, 899, 951, 1066
BstNI CCWGG 3 cut(s) 204, 534, 807
BstPAI GACNNNNGTC 1 cut(s) 829
BstSCI CCNGG 3 cut(s) 202, 532, 805
BstV1I GCAGC 2 cut(s) 580, 722
BstV2I GAAGAC 3 cut(s) 59, 825, 829
BstXI CCANNNNNNTGG 1 cut(s) 659
BsuRI GGCC 1 cut(s) 202
BtgZI GCGATG 1 cut(s) 753
BtrI CACGTC 1 cut(s) 539
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 288, 963
CaiI CAGNNNCTG 1 cut(s) 209
CciI TCATGA 1 cut(s) 948
Cfr10I RCCGGY 1 cut(s) 774
Cfr13I GGNCC 3 cut(s) 200, 649, 669
CspAI ACCGGT 1 cut(s) 774
CspCI CAANNNNNGTGG 2 cut(s) 923, 958
CviAII CATG 4 cut(s) 223, 520, 926, 949
DdeI CTNAG 5 cut(s) 182, 386, 615, 1063, 1075
DpnI GATC 8 cut(s) 132, 248, 480, 706, 879, 901, 953, 1068
DpnII GATC 8 cut(s) 130, 246, 478, 704, 877, 899, 951, 1066
DraI TTTAAA 1 cut(s) 1011
Eam1104I CTCTTC 5 cut(s) 118, 290, 325, 434, 717
EarI CTCTTC 5 cut(s) 118, 290, 325, 434, 717
Eco24I GRGCYC 1 cut(s) 752
Eco47I GGWCC 2 cut(s) 649, 669
Eco57I CTGAAG 1 cut(s) 819
Eco88I CYCGRG 1 cut(s) 173
EcoRII CCWGG 3 cut(s) 202, 532, 805
EcoT38I GRGCYC 1 cut(s) 752
FaeI CATG 4 cut(s) 226, 523, 929, 952
FaqI GGGAC 1 cut(s) 314
FatI CATG 4 cut(s) 222, 519, 925, 948
Fnu4HI GCNGC 2 cut(s) 569, 736
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 752
Fsp4HI GCNGC 2 cut(s) 569, 736
FspBI CTAG 5 cut(s) 30, 426, 453, 491, 849
GluI GCNGC 2 cut(s) 569, 736
GsaI CCCAGC 1 cut(s) 422
HaeIII GGCC 1 cut(s) 202
HapII CCGG 3 cut(s) 26, 105, 775
Hin1II CATG 4 cut(s) 226, 523, 929, 952
HindIII AAGCTT 1 cut(s) 1005
HinfI GANTC 7 cut(s) 55, 233, 286, 313, 743, 845, 1032
HpaII CCGG 3 cut(s) 26, 105, 775
HphI GGTGA 2 cut(s) 522, 795
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 6 cut(s) 130, 185, 838, 920, 973, 988
Hpy188III TCNNGA 7 cut(s) 161, 347, 394, 634, 764, 819, 949
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 5 cut(s) 30, 391, 631, 974, 1022
HpyCH4III ACNGT 2 cut(s) 828, 967
HpyCH4IV ACGT 3 cut(s) 525, 538, 586
HpyCH4V TGCA 2 cut(s) 568, 957
HpyF3I CTNAG 5 cut(s) 182, 386, 615, 1063, 1075
HpySE526I ACGT 3 cut(s) 525, 538, 586
Hsp92II CATG 4 cut(s) 226, 523, 929, 952
Kzo9I GATC 8 cut(s) 130, 246, 478, 704, 877, 899, 951, 1066
LmnI GCTCC 3 cut(s) 206, 273, 415
Lsp1109I GCAGC 2 cut(s) 580, 722
LweI GCATC 1 cut(s) 555
MaeI CTAG 5 cut(s) 30, 426, 453, 491, 849
MaeII ACGT 3 cut(s) 525, 538, 586
MaeIII GTNAC 1 cut(s) 793
MalI GATC 8 cut(s) 132, 248, 480, 706, 879, 901, 953, 1068
MboI GATC 8 cut(s) 130, 246, 478, 704, 877, 899, 951, 1066
MhlI GDGCHC 1 cut(s) 752
MluCI AATT 6 cut(s) 135, 237, 430, 643, 691, 1086
MlyI GAGTC 2 cut(s) 49, 227
MmeI TCCRAC 1 cut(s) 943
MnlI CCTC 9 cut(s) 121, 179, 185, 210, 291, 435, 469, 487, 537
MroXI GAANNNNTTC 1 cut(s) 814
MseI TTAA 3 cut(s) 336, 996, 1010
MspI CCGG 3 cut(s) 26, 105, 775
MspR9I CCNGG 3 cut(s) 204, 534, 807
MvaI CCWGG 3 cut(s) 204, 534, 807
NdeII GATC 8 cut(s) 130, 246, 478, 704, 877, 899, 951, 1066
NlaIII CATG 4 cut(s) 226, 523, 929, 952
NlaIV GGNNCC 3 cut(s) 109, 275, 650
NmeAIII GCCGAG 1 cut(s) 24
PagI TCATGA 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 814
PfeI GAWTC 5 cut(s) 286, 313, 743, 845, 1032
PflFI GACNNNGTC 1 cut(s) 58
PinAI ACCGGT 1 cut(s) 774
PkrI GCNGC 2 cut(s) 570, 737
PleI GAGTC 2 cut(s) 49, 227
PpsI GAGTC 2 cut(s) 49, 227
PshAI GACNNNNGTC 1 cut(s) 829
Psp1406I AACGTT 1 cut(s) 525
Psp6I CCWGG 3 cut(s) 202, 532, 805
PspFI CCCAGC 1 cut(s) 418
PspGI CCWGG 3 cut(s) 202, 532, 805
PspN4I GGNNCC 3 cut(s) 109, 275, 650
PspPI GGNCC 3 cut(s) 200, 649, 669
PstNI CAGNNNCTG 1 cut(s) 209
PsyI GACNNNGTC 1 cut(s) 58
SaqAI TTAA 3 cut(s) 336, 996, 1010
SatI GCNGC 2 cut(s) 569, 736
Sau3AI GATC 8 cut(s) 130, 246, 478, 704, 877, 899, 951, 1066
Sau96I GGNCC 3 cut(s) 200, 649, 669
SchI GAGTC 2 cut(s) 49, 227
ScrFI CCNGG 3 cut(s) 204, 534, 807
SduI GDGCHC 1 cut(s) 752
SfaNI GCATC 1 cut(s) 555
SinI GGWCC 2 cut(s) 649, 669
SmlI CTYRAG 3 cut(s) 268, 347, 548
SmoI CTYRAG 3 cut(s) 268, 347, 548
Sse9I AATT 6 cut(s) 135, 237, 430, 643, 691, 1086
SspMI CTAG 5 cut(s) 30, 426, 453, 491, 849
StyD4I CCNGG 3 cut(s) 202, 532, 805
TaaI ACNGT 2 cut(s) 828, 967
TaiI ACGT 3 cut(s) 528, 541, 589
TaqI TCGA 7 cut(s) 50, 249, 393, 633, 746, 790, 1017
TaqII GACCGA 1 cut(s) 48
TasI AATT 6 cut(s) 135, 237, 430, 643, 691, 1086
TfiI GAWTC 5 cut(s) 286, 313, 743, 845, 1032
Tru1I TTAA 3 cut(s) 336, 996, 1010
Tru9I TTAA 3 cut(s) 336, 996, 1010
TscAI CASTG 2 cut(s) 288, 970
TseI GCWGC 2 cut(s) 568, 735
TspDTI ATGAA 7 cut(s) 17, 23, 157, 370, 536, 876, 914
TspGWI ACGGA 1 cut(s) 1014
TspRI CASTG 2 cut(s) 288, 970
Tth111I GACNNNGTC 1 cut(s) 58
VpaK11BI GGWCC 2 cut(s) 649, 669
XmnI GAANNNNTTC 1 cut(s) 814
XspI CTAG 5 cut(s) 30, 426, 453, 491, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.