Rh5AG457800

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009893
Physical Location & Seq
Reverse (-)
78441754 .. 78442748
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG457800.1

Sequence Viewer

Length: 903 bp
ATGGGGTTGGAGTCAATTCCAGATGCCAACTTGGTCTCCACCCCAAATTCAATATCCCGTAGCCGGTCTATGAATTCTGTGGACCGGCTTTCGGGAGACCATGATCCAATCGAGGCACATGAGCGCCGACGAGTCAAGTCGTTTAGAGAGATGCCAACATTTATTGAAAATGAGGAATTCCTTGTTCTTAGCTTTGAGAATGGGAGTGAAAGCAAAGAAAGGAGGTCGAAGGGGAGGAAATGTGAGACGGGCCATGGAGAATTGAGGAAGAAGAAGGCAGGAAAGAGCAGAAACAAGGGAAATAGAAAACAAAGAGGGTTTGAGAAGGAAAAGAAGCAAGTTCAAGAAGAAAAAAGCAGAAGGGTTTTGAATGGGACGGAAATGCTAAGAAGCAAAACCTCTCATAAACCCAAGAAAGAGACCATCTTTGATATGCTTAAGAATGTAGAATCTGATTGTACCTCGGAAGATTTAAGCCCGGTTTCTGTCCTTGATTGTGGTCAGTTTCTAGTTGATAACGAAGTTCCTACATCAGAAGAAGATCCAGTCTTGGTGAGTTCATTTCCGAGAAGAAAAGACGACTGTTTAACTTGTGATGCAAGAAAAACAAAGAAAATCGAAGGCATATGTCTTGGAACAAAGAAAGAGTATCATACTGCAGAGTTCTTTGAGATTTTGGGTGAAATTTGTACTCTGACTGAAGCTGAATTGGTTGGATCAAATTGGAGCGTACACAAAGGCATCTGGAATAATCATGAAGGTTCTGCAGGAATTGCTGCAGATTTCGAGTCACAAATTCTAGGCCAATTAATAGAGGAGCTCGTGGATCAACTCGCTGATTTTCCTACTGAATATTCAAAACCTGTAAGATTTACGACCATTGTAAATTTGGTATTACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

300

Amino Acids

33.97

Weight (kDa)

6.24

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 98, 536, 724, 834
AcsI RAATTY 6 cut(s) 46, 73, 176, 684, 795, 886
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 3 cut(s) 460, 691, 732
AfiI CCNNNNNNNGG 2 cut(s) 63, 91
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 5 cut(s) 51, 167, 344, 370, 858
AluBI AGCT 3 cut(s) 192, 704, 820
AluI AGCT 3 cut(s) 192, 704, 820
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 4 cut(s) 40, 90, 239, 413
AlwI GGATC 4 cut(s) 98, 536, 724, 834
AoxI GGCC 2 cut(s) 250, 802
ApeKI GCWGC 1 cut(s) 776
ApoI RAATTY 6 cut(s) 46, 73, 176, 684, 795, 886
AseI ATTAAT 1 cut(s) 809
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 82, 250
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 565, 692
AvaII GGWCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 822
BauI CACGAG 1 cut(s) 821
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 1 cut(s) 763
BccI CCATC 1 cut(s) 431
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 4 cut(s) 40, 90, 239, 413
BfaI CTAG 2 cut(s) 509, 800
BfmI CTRYAG 3 cut(s) 657, 765, 777
BfoI RGCGCY 1 cut(s) 127
BfrI CTTAAG 1 cut(s) 437
BisI GCNGC 1 cut(s) 777
BlsI GCNGC 1 cut(s) 778
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 82, 250
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 4 cut(s) 13, 141, 586, 750
BpuMI CCSGG 1 cut(s) 479
BsaI GGTCTC 3 cut(s) 40, 90, 413
BsaJI CCNNGG 2 cut(s) 253, 462
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 226, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 91
Bse118I RCCGGY 2 cut(s) 63, 84
Bse1I ACTGG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 253, 462
BseLI CCNNNNNNNGG 2 cut(s) 63, 91
BseNI ACTGG 1 cut(s) 545
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 1 cut(s) 763
BshFI GGCC 2 cut(s) 252, 804
BsiHKAI GWGCWC 1 cut(s) 822
BsiSI CCGG 3 cut(s) 64, 85, 479
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 63, 91
BsmAI GTCTC 4 cut(s) 40, 90, 239, 413
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 2 cut(s) 252, 804
Bso31I GGTCTC 3 cut(s) 40, 90, 413
Bsp1286I GDGCHC 1 cut(s) 822
Bsp143I GATC 4 cut(s) 103, 541, 716, 826
Bsp19I CCATGG 1 cut(s) 253
BspANI GGCC 2 cut(s) 252, 804
BspHI TCATGA 1 cut(s) 754
BspMAI CTGCAG 3 cut(s) 661, 769, 781
BspPI GGATC 4 cut(s) 98, 536, 724, 834
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 3 cut(s) 40, 90, 413
BsrFI RCCGGY 2 cut(s) 63, 84
BsrI ACTGG 1 cut(s) 545
BssAI RCCGGY 2 cut(s) 63, 84
BssECI CCNNGG 2 cut(s) 253, 462
BssMI GATC 4 cut(s) 103, 541, 716, 826
BssSI CACGAG 1 cut(s) 821
BssT1I CCWWGG 1 cut(s) 253
Bst2BI CACGAG 1 cut(s) 821
Bst4CI ACNGT 1 cut(s) 584
BstAFI CTTAAG 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 773
BstDEI CTNAG 2 cut(s) 188, 386
BstDSI CCRYGG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 4 cut(s) 106, 544, 719, 829
BstMAI GTCTC 4 cut(s) 40, 90, 239, 413
BstMBI GATC 4 cut(s) 103, 541, 716, 826
BstMWI GCNNNNNNNGC 1 cut(s) 773
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 3 cut(s) 657, 765, 777
BstV1I GCAGC 1 cut(s) 763
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BsuRI GGCC 2 cut(s) 252, 804
BtgI CCRYGG 1 cut(s) 253
CciI TCATGA 1 cut(s) 754
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 2 cut(s) 63, 84
Cfr13I GGNCC 2 cut(s) 82, 250
Csp6I GTAC 3 cut(s) 459, 690, 731
CviAII CATG 4 cut(s) 101, 119, 254, 755
CviJI RGCY 8 cut(s) 63, 88, 192, 252, 477, 704, 804, 820
CviKI_1 RGCY 8 cut(s) 63, 88, 192, 252, 477, 704, 804, 820
CviQI GTAC 3 cut(s) 459, 690, 731
DdeI CTNAG 2 cut(s) 188, 386
DpnI GATC 4 cut(s) 105, 543, 718, 828
DpnII GATC 4 cut(s) 103, 541, 716, 826
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 822
Eco31I GGTCTC 3 cut(s) 40, 90, 413
Eco47I GGWCC 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 820
EcoRI GAATTC 2 cut(s) 73, 176
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 4 cut(s) 104, 122, 257, 758
FaqI GGGAC 1 cut(s) 388
FatI CATG 4 cut(s) 100, 118, 253, 754
FauNDI CATATG 1 cut(s) 626
Fnu4HI GCNGC 1 cut(s) 777
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 1 cut(s) 777
FspBI CTAG 2 cut(s) 509, 800
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 777
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 2 cut(s) 252, 804
HapII CCGG 3 cut(s) 64, 85, 479
HhaI GCGC 1 cut(s) 126
Hin1II CATG 4 cut(s) 104, 122, 257, 758
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 4 cut(s) 11, 132, 449, 788
HpaII CCGG 3 cut(s) 64, 85, 479
HphI GGTGA 2 cut(s) 565, 692
Hpy166II GTNNAC 2 cut(s) 82, 733
Hpy188I TCNGA 5 cut(s) 454, 466, 535, 567, 696
Hpy188III TCNNGA 5 cut(s) 20, 93, 344, 745, 755
Hpy8I GTNNAC 2 cut(s) 82, 733
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 6 cut(s) 223, 268, 319, 354, 614, 752
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4V TGCA 4 cut(s) 599, 659, 767, 779
HpyF10VI GCNNNNNNNGC 1 cut(s) 773
HpyF3I CTNAG 2 cut(s) 188, 386
Hsp92II CATG 4 cut(s) 104, 122, 257, 758
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 103, 541, 716, 826
LmnI GCTCC 2 cut(s) 726, 817
LpnPI CCDG 9 cut(s) 33, 77, 98, 264, 492, 558, 730, 753, 876
Lsp1109I GCAGC 1 cut(s) 763
LweI GCATC 4 cut(s) 13, 141, 586, 750
MaeI CTAG 2 cut(s) 509, 800
MaeIII GTNAC 1 cut(s) 789
MalI GATC 4 cut(s) 105, 543, 718, 828
MboI GATC 4 cut(s) 103, 541, 716, 826
MboII GAAGA 7 cut(s) 280, 283, 359, 479, 548, 551, 582
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 1 cut(s) 822
MlyI GAGTC 3 cut(s) 20, 141, 797
MmeI TCCRAC 1 cut(s) 694
MnlI CCTC 9 cut(s) 106, 166, 216, 228, 258, 308, 409, 472, 808
MseI TTAA 4 cut(s) 438, 473, 587, 809
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 3 cut(s) 64, 85, 479
MspR9I CCNGG 1 cut(s) 479
MwoI GCNNNNNNNGC 1 cut(s) 773
NciI CCSGG 1 cut(s) 479
NcoI CCATGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 626
NdeII GATC 4 cut(s) 103, 541, 716, 826
NlaIII CATG 4 cut(s) 104, 122, 257, 758
NmuCI GTSAC 1 cut(s) 789
PagI TCATGA 1 cut(s) 754
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 1 cut(s) 778
PleI GAGTC 3 cut(s) 19, 140, 796
PpsI GAGTC 3 cut(s) 19, 140, 796
PshBI ATTAAT 1 cut(s) 809
Psp124BI GAGCTC 1 cut(s) 822
PspPI GGNCC 2 cut(s) 82, 250
PstI CTGCAG 3 cut(s) 661, 769, 781
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 3 cut(s) 460, 691, 732
RsaNI GTAC 3 cut(s) 459, 690, 731
SacI GAGCTC 1 cut(s) 822
SaqAI TTAA 4 cut(s) 438, 473, 587, 809
SatI GCNGC 1 cut(s) 777
Sau3AI GATC 4 cut(s) 103, 541, 716, 826
Sau96I GGNCC 2 cut(s) 82, 250
SchI GAGTC 3 cut(s) 20, 141, 797
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 822
SetI ASST 8 cut(s) 194, 227, 401, 464, 706, 763, 822, 865
SfaNI GCATC 4 cut(s) 13, 141, 586, 750
SfcI CTRYAG 3 cut(s) 657, 765, 777
SinI GGWCC 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SspI AATATT 1 cut(s) 854
SspMI CTAG 2 cut(s) 509, 800
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 584
TaqI TCGA 4 cut(s) 111, 227, 618, 786
TatI WGTACW 1 cut(s) 689
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 4 cut(s) 438, 473, 587, 809
Tru9I TTAA 4 cut(s) 438, 473, 587, 809
TseFI GTSAC 1 cut(s) 789
TseI GCWGC 1 cut(s) 776
Tsp45I GTSAC 1 cut(s) 789
TspDTI ATGAA 3 cut(s) 86, 549, 771
TspGWI ACGGA 1 cut(s) 392
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 82
VspI ATTAAT 1 cut(s) 809
XapI RAATTY 6 cut(s) 46, 73, 176, 684, 795, 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XspI CTAG 2 cut(s) 509, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.