pycom03g05480

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0009893
Physical Location & Seq
Forward (+)
4318315 .. 4319673
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05480.1

Sequence Viewer

Length: 828 bp
ATGAATTCTGCTGACCGGTTCGATGGAAGTGACTCAATGCAGCATCACCGGGTAAAGTCGAGTCAATCATTTAGAGAGATGCCTACATTTTTTGAGCTAGATAATGAGGAATTCTTTGTTCTCACCTTTGAGAGTGAGAGGAAAAGCAAGGAAACAAAAACAAAAGGGAGGAAATGTGAAAAGGAACAGAACGAAAAAACCGAAAACAGAAGAAAAAGAAAGGCAGAGAAGAAGAAGCAACTTCAAGAAGGACAAAGCAGAAGGACCTTGAAAGATTTGAATGGGAGAGAGATGATGAGAAGCAGAAGTACTTCAGATAGAAGCACTTCTGATGAAGATTCAAAAAGTACTTCAATTGCTACAAAGACGATAGAGAAGAAGAAGACTACATGTGATGTGCTTAAAAATGTAGAATCTGAGTTCAGCTCAGAAGATTTAACCCCGGTTTCGATTCTCGATTGTGGTCAATTTCTTGTTGATCCGGAAGTCCTTTCTTCAGAAGAAGATCCAAGTTTAGCCAATTCATGCAAAGAAAATTGTCCAAATGGTGATGCAAGAAGAACAAAGACAAGACAAGGCAATCGTCTTGGACCAAAGAAGAAAGAATTTCACAGAGCAAAGCATATTGGGATGTGGAGTGAGATTTATAGGCTGACTGAAGCTGAATTGGTCGGTTCAAATTGGATCATAAAAAACAAAGGCACGTGGAATTTTGAAGCTATTTCTGCAGGCATTGGTGCAGATTTCGAGTCACAGATTCTTGGTCAATTATTAGACGAGCTTGTAGATCAATTTGCTGATTTTCCCATGGAAATTCAGAACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

276

Amino Acids

31.6

Weight (kDa)

6.5

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 481
AclWI GGATC 3 cut(s) 473, 500, 692
AcsI RAATTY 5 cut(s) 4, 110, 605, 709, 813
AcuI CTGAAG 3 cut(s) 297, 480, 678
AcvI CACGTG 1 cut(s) 705
AfaI GTAC 2 cut(s) 310, 349
AflIII ACRYGT 1 cut(s) 389
AgeI ACCGGT 1 cut(s) 15
AgsI TTSAA 7 cut(s) 245, 271, 280, 342, 354, 678, 716
AluBI AGCT 5 cut(s) 97, 426, 662, 719, 781
AluI AGCT 5 cut(s) 97, 426, 662, 719, 781
AlwI GGATC 3 cut(s) 473, 500, 692
AlwNI CAGNNNCTG 1 cut(s) 823
Aor13HI TCCGGA 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 5 cut(s) 4, 110, 605, 709, 813
AsiGI ACCGGT 1 cut(s) 15
Asp700I GAANNNNTTC 2 cut(s) 310, 325
AspS9I GGNCC 2 cut(s) 264, 590
AsuC2I CCSGG 2 cut(s) 50, 443
AsuHPI GGTGA 3 cut(s) 38, 115, 560
AvaII GGWCC 2 cut(s) 264, 590
BarI GAAGNNNNNNTAC 2 cut(s) 292, 324
BbrPI CACGTG 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 17
BcnI CCSGG 2 cut(s) 50, 443
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 726
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmcAI AGTACT 2 cut(s) 310, 349
Bme1390I CCNGG 2 cut(s) 50, 443
Bme18I GGWCC 2 cut(s) 264, 590
BmgT120I GGNCC 2 cut(s) 264, 590
BmrFI CCNGG 2 cut(s) 50, 443
BmsI GCATC 3 cut(s) 52, 69, 541
BpiI GAAGAC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpuMI CCSGG 2 cut(s) 50, 443
BsaAI YACGTR 1 cut(s) 705
BsaJI CCNNGG 2 cut(s) 441, 807
BsaWI WCCGGW 2 cut(s) 15, 481
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bse118I RCCGGY 1 cut(s) 15
BseAI TCCGGA 1 cut(s) 481
BseDI CCNNGG 2 cut(s) 441, 807
BseGI GGATG 1 cut(s) 636
BseMII CTCAG 2 cut(s) 408, 441
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 759
BshTI ACCGGT 1 cut(s) 15
BsiSI CCGG 4 cut(s) 16, 49, 443, 482
Bsp13I TCCGGA 1 cut(s) 481
Bsp143I GATC 4 cut(s) 478, 505, 684, 787
Bsp19I CCATGG 1 cut(s) 807
BspCNI CTCAG 2 cut(s) 409, 440
BspEI TCCGGA 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 730
BspPI GGATC 3 cut(s) 473, 500, 692
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 441, 807
BssMI GATC 4 cut(s) 478, 505, 684, 787
BssT1I CCWWGG 1 cut(s) 807
BstBAI YACGTR 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 2 cut(s) 417, 427
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 1 cut(s) 636
BstKTI GATC 4 cut(s) 481, 508, 687, 790
BstMBI GATC 4 cut(s) 478, 505, 684, 787
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 2 cut(s) 48, 441
BstSFI CTRYAG 1 cut(s) 726
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 1 cut(s) 636
Cac8I GCNNGC 1 cut(s) 730
CaiI CAGNNNCTG 1 cut(s) 823
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 264, 590
Csp6I GTAC 2 cut(s) 309, 348
CspAI ACCGGT 1 cut(s) 15
CviAII CATG 3 cut(s) 390, 525, 808
CviJI RGCY 7 cut(s) 97, 426, 518, 652, 662, 719, 781
CviKI_1 RGCY 7 cut(s) 97, 426, 518, 652, 662, 719, 781
CviQI GTAC 2 cut(s) 309, 348
DdeI CTNAG 2 cut(s) 417, 427
DpnI GATC 4 cut(s) 480, 507, 686, 789
DpnII GATC 4 cut(s) 478, 505, 684, 787
Eco130I CCWWGG 1 cut(s) 807
Eco47I GGWCC 2 cut(s) 264, 590
Eco57I CTGAAG 3 cut(s) 297, 480, 678
Eco72I CACGTG 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 264
EcoRI GAATTC 2 cut(s) 4, 110
EcoT14I CCWWGG 1 cut(s) 807
ErhI CCWWGG 1 cut(s) 807
FaeI CATG 3 cut(s) 393, 528, 811
FaiI YATR 6 cut(s) 391, 526, 624, 648, 689, 809
FatI CATG 3 cut(s) 389, 524, 807
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 643
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 41
HapII CCGG 4 cut(s) 16, 49, 443, 482
Hin1II CATG 3 cut(s) 393, 528, 811
HinfI GANTC 7 cut(s) 32, 61, 338, 413, 451, 749, 757
HpaII CCGG 4 cut(s) 16, 49, 443, 482
HphI GGTGA 3 cut(s) 38, 115, 560
Hpy188I TCNGA 6 cut(s) 316, 331, 418, 430, 499, 819
Hpy188III TCNNGA 3 cut(s) 245, 455, 482
HpyAV CCTTC 2 cut(s) 242, 255
HpyCH4IV ACGT 1 cut(s) 704
HpyCH4V TGCA 5 cut(s) 40, 528, 554, 728, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 2 cut(s) 417, 427
HpySE526I ACGT 1 cut(s) 704
Hsp92II CATG 3 cut(s) 393, 528, 811
Kpn2I TCCGGA 1 cut(s) 481
Kzo9I GATC 4 cut(s) 478, 505, 684, 787
LpnPI CCDG 5 cut(s) 29, 62, 456, 495, 714
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 3 cut(s) 52, 69, 541
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 704
MaeIII GTNAC 2 cut(s) 29, 750
MalI GATC 4 cut(s) 480, 507, 686, 789
MboI GATC 4 cut(s) 478, 505, 684, 787
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 505
MlyI GAGTC 3 cut(s) 26, 70, 758
MnlI CCTC 3 cut(s) 100, 132, 162
MroI TCCGGA 1 cut(s) 481
MroXI GAANNNNTTC 2 cut(s) 310, 325
MseI TTAA 2 cut(s) 402, 437
MspI CCGG 4 cut(s) 16, 49, 443, 482
MspR9I CCNGG 2 cut(s) 50, 443
MunI CAATTG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 725
NciI CCSGG 2 cut(s) 50, 443
NcoI CCATGG 1 cut(s) 807
NdeII GATC 4 cut(s) 478, 505, 684, 787
NlaIII CATG 3 cut(s) 393, 528, 811
NmuCI GTSAC 2 cut(s) 29, 750
NspI RCATGY 1 cut(s) 393
PciI ACATGT 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdmI GAANNNNTTC 2 cut(s) 310, 325
PfeI GAWTC 4 cut(s) 338, 413, 451, 757
PinAI ACCGGT 1 cut(s) 15
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 3 cut(s) 26, 69, 757
PmaCI CACGTG 1 cut(s) 705
PmlI CACGTG 1 cut(s) 705
PpsI GAGTC 3 cut(s) 26, 69, 757
Ppu21I YACGTR 1 cut(s) 705
PpuMI RGGWCCY 1 cut(s) 264
PscI ACATGT 1 cut(s) 389
Psp5II RGGWCCY 1 cut(s) 264
PspCI CACGTG 1 cut(s) 705
PspPI GGNCC 2 cut(s) 264, 590
PspPPI RGGWCCY 1 cut(s) 264
PstI CTGCAG 1 cut(s) 730
PstNI CAGNNNCTG 1 cut(s) 823
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 2 cut(s) 310, 349
RsaNI GTAC 2 cut(s) 309, 348
SaqAI TTAA 2 cut(s) 402, 437
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 4 cut(s) 478, 505, 684, 787
Sau96I GGNCC 2 cut(s) 264, 590
ScaI AGTACT 2 cut(s) 310, 349
SchI GAGTC 3 cut(s) 26, 70, 758
ScrFI CCNGG 2 cut(s) 50, 443
SetI ASST 9 cut(s) 99, 128, 269, 428, 664, 707, 721, 783, 825
SfaNI GCATC 3 cut(s) 52, 69, 541
SfcI CTRYAG 1 cut(s) 726
SinI GGWCC 2 cut(s) 264, 590
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 48, 441
StyI CCWWGG 1 cut(s) 807
TaiI ACGT 1 cut(s) 707
TaqI TCGA 5 cut(s) 21, 59, 449, 456, 747
TatI WGTACW 2 cut(s) 308, 347
TfiI GAWTC 4 cut(s) 338, 413, 451, 757
Tru1I TTAA 2 cut(s) 402, 437
Tru9I TTAA 2 cut(s) 402, 437
TseFI GTSAC 2 cut(s) 29, 750
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 2 cut(s) 29, 750
TspDTI ATGAA 3 cut(s) 17, 348, 513
VpaK11BI GGWCC 2 cut(s) 264, 590
XapI RAATTY 5 cut(s) 4, 110, 605, 709, 813
XceI RCATGY 1 cut(s) 393
XmnI GAANNNNTTC 2 cut(s) 310, 325
XspI CTAG 1 cut(s) 98
ZrmI AGTACT 2 cut(s) 310, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.