pycom03g05470

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0009893
Physical Location & Seq
Forward (+)
4317944 .. 4318237
294 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05470.1

Sequence Viewer

Length: 294 bp
ATGAAGTTACTAGTTTCTTCCCCTTCTTTTTCGTCATGCTCATCATCATCCACCACCACTGCTTTTGATGCAACAATGTGCAGTTCGAAAAGCGCTACCCCCGGCTGCATTGCCGGAATTTTGCGCAGAATTCTATGCTATGGTAGCTTCCCCACATACCCTTCTGACCACATCACAGAAGAAGAAGAAAATTCTGTGGAATCTAGTTCCAAGGATCAAGATTTCAATTCCAATGAGAAAACAGGGGAGAAAACAGATCGATCTCTGCCACTCCAAGCATGGTGGCAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

98

Amino Acids

10.54

Weight (kDa)

4.78

Isoelectric Point (pI)

78.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 125
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 3 cut(s) 117, 129, 190
AfeI AGCGCT 1 cut(s) 94
AgsI TTSAA 1 cut(s) 226
AhlI ACTAGT 1 cut(s) 10
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
AlwI GGATC 1 cut(s) 222
Aor51HI AGCGCT 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 3 cut(s) 117, 129, 190
AspLEI GCGC 2 cut(s) 95, 126
AsuC2I CCSGG 1 cut(s) 102
AsuII TTCGAA 1 cut(s) 86
BbvI GCAGC 1 cut(s) 92
BcnI CCSGG 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 10
BfaI CTAG 2 cut(s) 11, 204
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 58
Bpu14I TTCGAA 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 100, 210
Bse3DI GCAATG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 100, 210
BseGI GGATG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 259
BsiSI CCGG 2 cut(s) 102, 114
Bsp119I TTCGAA 1 cut(s) 86
Bsp143I GATC 3 cut(s) 214, 256, 260
BspDI ATCGAT 1 cut(s) 259
BspPI GGATC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 100, 210
BssMI GATC 3 cut(s) 214, 256, 260
BssT1I CCWWGG 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 86
BstF5I GGATG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 126
BstKTI GATC 3 cut(s) 217, 259, 263
BstMBI GATC 3 cut(s) 214, 256, 260
BstMWI GCNNNNNNNGC 2 cut(s) 68, 144
BstSCI CCNGG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 92
Bsu15I ATCGAT 1 cut(s) 259
BsuTUI ATCGAT 1 cut(s) 259
BtsCI GGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
CfoI GCGC 2 cut(s) 95, 126
ClaI ATCGAT 1 cut(s) 259
CspCI CAANNNNNGTGG 3 cut(s) 46, 81, 263
CviAII CATG 2 cut(s) 36, 279
CviJI RGCY 3 cut(s) 105, 147, 291
CviKI_1 RGCY 3 cut(s) 105, 147, 291
DpnI GATC 3 cut(s) 216, 258, 262
DpnII GATC 3 cut(s) 214, 256, 260
Eco130I CCWWGG 1 cut(s) 210
Eco47III AGCGCT 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 39, 282
FaiI YATR 5 cut(s) 37, 136, 141, 157, 280
FatI CATG 2 cut(s) 35, 278
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 2 cut(s) 11, 204
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 2 cut(s) 94, 125
GluI GCNGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 96
HapII CCGG 2 cut(s) 102, 114
HhaI GCGC 2 cut(s) 95, 126
Hin1II CATG 2 cut(s) 39, 282
Hin6I GCGC 2 cut(s) 93, 124
HinP1I GCGC 2 cut(s) 93, 124
HinfI GANTC 1 cut(s) 200
HpaII CCGG 2 cut(s) 102, 114
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 33, 171
HpyCH4V TGCA 3 cut(s) 71, 81, 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 144
Hsp92II CATG 2 cut(s) 39, 282
HspAI GCGC 2 cut(s) 93, 124
Kzo9I GATC 3 cut(s) 214, 256, 260
LpnPI CCDG 3 cut(s) 115, 127, 228
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 11, 204
MaeIII GTNAC 1 cut(s) 6
MalI GATC 3 cut(s) 216, 258, 262
MboI GATC 3 cut(s) 214, 256, 260
MboII GAAGA 4 cut(s) 9, 191, 194, 197
MluCI AATT 4 cut(s) 117, 129, 190, 226
MspI CCGG 2 cut(s) 102, 114
MspR9I CCNGG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 68, 144
NciI CCSGG 1 cut(s) 102
NdeII GATC 3 cut(s) 214, 256, 260
NlaIII CATG 2 cut(s) 39, 282
NsbI TGCGCA 1 cut(s) 125
NspV TTCGAA 1 cut(s) 86
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 107
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 3 cut(s) 214, 256, 260
ScrFI CCNGG 1 cut(s) 102
SetI ASST 1 cut(s) 149
SfaNI GCATC 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 86
SpeI ACTAGT 1 cut(s) 10
Sse9I AATT 4 cut(s) 117, 129, 190, 226
SspMI CTAG 2 cut(s) 11, 204
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 210
TaqI TCGA 2 cut(s) 86, 259
TasI AATT 4 cut(s) 117, 129, 190, 226
TfiI GAWTC 1 cut(s) 200
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 64
XapI RAATTY 3 cut(s) 117, 129, 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XspI CTAG 2 cut(s) 11, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.