Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009893

Physical Location & Seq

Genomic Coordinates Reverse (-)

75838197 .. 75838769

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG476700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGGTTGGAGTCAATTCCAGATGTCAACTTGGTCTCCACCCCAAATTCAATATCCCGTAGCCGGTCTATGAATTATGTGGACCGGCTTTCGGGAGACCATGATCCAATCGAGGCACATGAGCGCCGACGAGTCAAGTCGTTTAGAGAGATGCCAACATTTATTGAAAATGAGGAATTCCTTGTTCTTAGCTTTGAGAATGGGAGTGAAAGAAAAGAAAGGAGATCGAAGGGGAGCAAAAATGAGACGGGCCATGGAGAATTGAGGAAGAAGAAGGCAGGAAAGAGCAGAAACAAGGGAAATAGAAAACAAAGAGGGTTTGAGAAGGAAAAGAAGCAAGTTCAAGAAGAAAAAAGCAGAAGGGTTTTGAAAGATTTGAATGGGAGGGAAATGCTAAGAAGCAAAACCTCTCATAAACCCAAGAAAGAGACCATCTTTGATATGCTTAAGAATGTAGAATCTGATTGTACCTCGGAAGATTTAAGCCCGGTTTCTGTCCTTGATTGTGGTCAGTTTCTAGTTGATAACGAAGTTCCTACATCAGGTCTGTCCCCTCAATTAAGCTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VARLMGL

Protein Analysis

190

Amino Acids

21.76

Weight (kDa)

9.51

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58630
fragaria_vesca	FvH4_3g38760 FvH4_3g38760
malus_domestica	MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica	Prupe.6G056200_v2.0.a1
pyrus_communis	pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis	RchiOBHm_Chr5g0069911
rosa_laevigata	RLG00000036107
rosa_multiflora	Rmu_ssc0000133.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011150
rosa_rugosa	Rorug05G0400700
rosa_samantha	Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana	Rw5G042750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	46, 176
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	3 cut(s)	63, 91, 542
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	6 cut(s)	51, 167, 344, 370, 379, 568
AluBI	AGCT	2 cut(s)	192, 564
AluI	AGCT	2 cut(s)	192, 564
Alw26I	GTCTC	4 cut(s)	40, 90, 239, 422
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	46, 176
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	82, 250
AsuC2I	CCSGG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	82
BccI	CCATC	1 cut(s)	440
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	4 cut(s)	40, 90, 239, 422
BfaI	CTAG	1 cut(s)	518
BfoI	RGCGCY	1 cut(s)	127
BfrI	CTTAAG	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	82, 250
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	488
BsaI	GGTCTC	3 cut(s)	40, 90, 422
BsaJI	CCNNGG	2 cut(s)	253, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 91, 542
Bse118I	RCCGGY	2 cut(s)	63, 84
BseDI	CCNNGG	2 cut(s)	253, 471
BseLI	CCNNNNNNNGG	3 cut(s)	63, 91, 542
BshFI	GGCC	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	64, 85, 488
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	3 cut(s)	63, 91, 542
BsmAI	GTCTC	4 cut(s)	40, 90, 239, 422
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	3 cut(s)	40, 90, 422
Bsp143I	GATC	2 cut(s)	103, 224
Bsp19I	CCATGG	1 cut(s)	253
BspANI	GGCC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	3 cut(s)	40, 90, 422
BsrFI	RCCGGY	2 cut(s)	63, 84
BssAI	RCCGGY	2 cut(s)	63, 84
BssECI	CCNNGG	2 cut(s)	253, 471
BssMI	GATC	2 cut(s)	103, 224
BssT1I	CCWWGG	1 cut(s)	253
BstAFI	CTTAAG	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	188, 395
BstDSI	CCRYGG	1 cut(s)	253
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	2 cut(s)	106, 227
BstMAI	GTCTC	4 cut(s)	40, 90, 239, 422
BstMBI	GATC	2 cut(s)	103, 224
BstSCI	CCNGG	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	2 cut(s)	63, 84
Cfr13I	GGNCC	2 cut(s)	82, 250
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	3 cut(s)	101, 119, 254
CviJI	RGCY	6 cut(s)	63, 88, 192, 252, 486, 564
CviKI_1	RGCY	6 cut(s)	63, 88, 192, 252, 486, 564
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	2 cut(s)	188, 395
DpnI	GATC	2 cut(s)	105, 226
DpnII	GATC	2 cut(s)	103, 224
Eco130I	CCWWGG	1 cut(s)	253
Eco31I	GGTCTC	3 cut(s)	40, 90, 422
Eco47I	GGWCC	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoRI	GAATTC	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	3 cut(s)	104, 122, 257
FaiI	YATR	7 cut(s)	71, 78, 102, 120, 255, 414, 443
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	3 cut(s)	100, 118, 253
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	3 cut(s)	64, 85, 488
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	104, 122, 257
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	3 cut(s)	11, 132, 458
HpaII	CCGG	3 cut(s)	64, 85, 488
Hpy166II	GTNNAC	2 cut(s)	28, 82
Hpy188I	TCNGA	2 cut(s)	463, 475
Hpy188III	TCNNGA	3 cut(s)	20, 93, 344
Hpy8I	GTNNAC	2 cut(s)	28, 82
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	4 cut(s)	223, 268, 319, 354
HpyF3I	CTNAG	2 cut(s)	188, 395
Hsp92II	CATG	3 cut(s)	104, 122, 257
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	103, 224
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	6 cut(s)	33, 77, 98, 264, 501, 528
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	518
MalI	GATC	2 cut(s)	105, 226
MboI	GATC	2 cut(s)	103, 224
MboII	GAAGA	4 cut(s)	280, 283, 359, 488
MluCI	AATT	6 cut(s)	15, 46, 73, 176, 260, 557
MlyI	GAGTC	2 cut(s)	20, 141
MnlI	CCTC	8 cut(s)	106, 166, 258, 308, 378, 418, 481, 564
MseI	TTAA	3 cut(s)	447, 482, 560
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	3 cut(s)	64, 85, 488
MspR9I	CCNGG	1 cut(s)	488
NciI	CCSGG	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	103, 224
NlaIII	CATG	3 cut(s)	104, 122, 257
PfeI	GAWTC	1 cut(s)	458
PleI	GAGTC	2 cut(s)	19, 140
PpsI	GAGTC	2 cut(s)	19, 140
PspPI	GGNCC	2 cut(s)	82, 250
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
SaqAI	TTAA	3 cut(s)	447, 482, 560
Sau3AI	GATC	2 cut(s)	103, 224
Sau96I	GGNCC	2 cut(s)	82, 250
SchI	GAGTC	2 cut(s)	20, 141
ScrFI	CCNGG	1 cut(s)	488
SetI	ASST	5 cut(s)	194, 410, 473, 547, 566
SfaNI	GCATC	1 cut(s)	141
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	6 cut(s)	15, 46, 73, 176, 260, 557
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	253
TaqI	TCGA	2 cut(s)	111, 227
TasI	AATT	6 cut(s)	15, 46, 73, 176, 260, 557
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	3 cut(s)	447, 482, 560
Tru9I	TTAA	3 cut(s)	447, 482, 560
TspDTI	ATGAA	1 cut(s)	86
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	82
XagI	CCTNNNNNAGG	1 cut(s)	540
XapI	RAATTY	2 cut(s)	46, 176
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.