Prupe.6G056200_v2.0.a1

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009893
Physical Location & Seq
Forward (+)
3952247 .. 3953967
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G056200.1

Sequence Viewer

Length: 1257 bp
ATGAAGTTGCCAAGCTCTTCCCCTTCTTTTTCTTCATGTTCCTCATTATCATCAACCTCCACTGCTTTTGATGCAGCTATGTGCAATTCAAAAGGCGCTGCTGCAGGATGCCTTGCTGGCATTTTCCGCAGAATTCTCTGCTATGGCAGCTTCCCCACATACCCTTCTGATCATATCACAGAAGAAGAAGAACAAGCAGCCAATTCTGCGGAGTCTTACAAGGATCAGGATTTCAAGTCCATGGAGAAAACAGGGGAGAAAACAGAGAGCGCTGCCACTCCAAGCCTAGTGGCAAGGCTGATGGGGTTGGAGTCAATTCCAGATGTCAACTTGGTCAATGGCCAGTCAACCCTTAACTCAATTTCACGTAGCAAATCCATGAATTCTGTGGACCGGTTTGCTGGAGGTGGTGATGATCCAATGCAGGCACAACATCGCAAGGTCAAGTCGACGCAGTCGTTTCGAGAGATGCCAACATTTCTTGAGCTTGAGAATGAGGAGTTCTTTATTCTCAGCTTTGAGAATGAGAGCAAAGTCAAGGAAATAAGATCAAAAGGGAGGAAAGGCGAAATGGGTTGTAGAGAAGGGAAGCAGAAAAGAGCAGGGAAGAGCAAAAACAATGAAAACATAACAGAAAGAGAGGCAGATAAGAAAAAGAAGCAAGTTCAAGAAGGAAAGAGCAGAAGGGTTTTGAAGGATTTGAATGGGAGGGAGATTCTCAGAAGTAGAAGTAGAAGTAGCTCTGATAATCCCAGTAACAAAGTTGGCAATATTAATGGTATAGTTAAAGATTCAAAAAGTGCTTCAATTCCTACAATCTGTGATGTTCTTAAGAATGTAGAATCTGAGTGCAGTTCAGAAGATTTAAGCCCAGTTTCGGTTCTTGATTGTGGTCAATTTCTCGTTGATCCAGAAGCTCCTACCTCAGATCAAGAAGATTCAGGCTTGCCTTGTCCATGTAAAGACAACGGTTTAATTGGTGATGCAAGAAGAACAAAGGCAAGAGAAGGCAAATGTCTCGGATCAAGGAAGAAAGAGTTTCACAGTGGAAAGCACATTGAGATGTGTGGGGAAATTTGTAGGCTGGTTGAAGATGAATTGGTTAGCTCAAATTGGATCATACACAACAAAGGCAGTTGGAACCAAGCGGGTTCTGCAGGCATTGGTGCAGATTTTGAGTCTCAAATTCTTGATCAATTATTAGACGAGCTGGTAGATCAATTTGCTGACTTACCCTTGAAAATTCAAAACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

419

Amino Acids

45.76

Weight (kDa)

5.8

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 449
AciI CCGC 3 cut(s) 127, 209, 1148
AclWI GGATC 5 cut(s) 231, 410, 902, 1030, 1124
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 5 cut(s) 132, 382, 1074, 1185, 1242
AfeI AGCGCT 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 877
AflII CTTAAG 1 cut(s) 830
AgeI ACCGGT 1 cut(s) 393
AluBI AGCT 9 cut(s) 15, 77, 150, 487, 516, 741, 917, 1107, 1210
AluI AGCT 9 cut(s) 15, 77, 150, 487, 516, 741, 917, 1107, 1210
Alw26I GTCTC 2 cut(s) 1022, 1185
AlwI GGATC 5 cut(s) 231, 410, 902, 1030, 1124
Aor51HI AGCGCT 1 cut(s) 271
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 6 cut(s) 74, 98, 101, 147, 197, 272
ApoI RAATTY 5 cut(s) 132, 382, 1074, 1185, 1242
AseI ATTAAT 1 cut(s) 774
AsiGI ACCGGT 1 cut(s) 393
AspLEI GCGC 2 cut(s) 98, 272
AspS9I GGNCC 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 422, 992
AvaII GGWCC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 342
BbvI GCAGC 6 cut(s) 85, 86, 88, 159, 209, 259
BccI CCATC 1 cut(s) 295
BcgI CGANNNNNNTGC 4 cut(s) 443, 477, 1000, 1034
BclI TGATCA 2 cut(s) 169, 1192
BcoDI GTCTC 2 cut(s) 1022, 1185
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 2 cut(s) 102, 1155
BfoI RGCGCY 2 cut(s) 99, 273
BfrI CTTAAG 1 cut(s) 830
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 6 cut(s) 75, 99, 102, 148, 198, 273
BlsI GCNGC 6 cut(s) 76, 100, 103, 149, 199, 274
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 1142
BmrI ACTGGG 2 cut(s) 747, 866
BmsI GCATC 4 cut(s) 61, 98, 459, 973
BmuI ACTGGG 2 cut(s) 747, 866
BpmI CTGGAG 1 cut(s) 423
BpuEI CTTGAG 2 cut(s) 503, 509
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 393
Bsc4I CCNNNNNNNGG 1 cut(s) 877
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 3 cut(s) 343, 753, 872
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 877
BseMII CTCAG 4 cut(s) 526, 733, 837, 939
BseNI ACTGG 3 cut(s) 343, 753, 872
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 6 cut(s) 85, 86, 88, 159, 209, 259
BsgI GTGCAG 2 cut(s) 871, 1188
BshFI GGCC 1 cut(s) 342
BshTI ACCGGT 1 cut(s) 393
BsiSI CCGG 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 877
BsmAI GTCTC 2 cut(s) 1022, 1185
BsnI GGCC 1 cut(s) 342
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 3 cut(s) 127, 209, 1148
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 4 cut(s) 525, 732, 838, 938
BspLI GGNNCC 1 cut(s) 1142
BspMAI CTGCAG 2 cut(s) 106, 1159
BspPI GGATC 5 cut(s) 231, 410, 902, 1030, 1124
BspQI GCTCTTC 2 cut(s) 22, 602
BspTI CTTAAG 1 cut(s) 830
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 3 cut(s) 343, 753, 872
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 971, 1046
Bst6I CTCTTC 2 cut(s) 22, 602
BstAFI CTTAAG 1 cut(s) 830
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 4 cut(s) 118, 426, 947, 1159
BstDEI CTNAG 4 cut(s) 512, 719, 846, 925
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 113
BstH2I RGCGCY 2 cut(s) 99, 273
BstHHI GCGC 2 cut(s) 98, 272
BstMAI GTCTC 2 cut(s) 1022, 1185
BstMWI GCNNNNNNNGC 6 cut(s) 71, 117, 126, 147, 206, 1154
BstSFI CTRYAG 2 cut(s) 102, 1155
BstV1I GCAGC 6 cut(s) 85, 86, 88, 159, 209, 259
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 240
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 2 cut(s) 60, 1051
Cac8I GCNNGC 4 cut(s) 118, 426, 947, 1159
CfoI GCGC 2 cut(s) 98, 272
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 391
CseI GACGC 1 cut(s) 460
CspAI ACCGGT 1 cut(s) 393
CspCI CAANNNNNGTGG 4 cut(s) 49, 84, 270, 305
CviAII CATG 4 cut(s) 36, 241, 379, 957
DdeI CTNAG 4 cut(s) 512, 719, 846, 925
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 22, 602
EarI CTCTTC 2 cut(s) 22, 602
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 391
Eco47III AGCGCT 1 cut(s) 271
EcoRI GAATTC 2 cut(s) 132, 382
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 4 cut(s) 39, 244, 382, 960
FatI CATG 4 cut(s) 35, 240, 378, 956
FauI CCCGC 1 cut(s) 1141
FbaI TGATCA 2 cut(s) 169, 1192
FblI GTMKAC 1 cut(s) 449
Fnu4HI GCNGC 6 cut(s) 75, 99, 102, 148, 198, 273
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 6 cut(s) 75, 99, 102, 148, 198, 273
FspBI CTAG 1 cut(s) 287
GlaI GCGC 2 cut(s) 97, 271
GluI GCNGC 6 cut(s) 75, 99, 102, 148, 198, 273
GsuI CTGGAG 1 cut(s) 423
HaeII RGCGCY 2 cut(s) 99, 273
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 394
HgaI GACGC 1 cut(s) 460
HhaI GCGC 2 cut(s) 98, 272
Hin1II CATG 4 cut(s) 39, 244, 382, 960
Hin6I GCGC 2 cut(s) 96, 270
HinP1I GCGC 2 cut(s) 96, 270
HincII GTYRAC 3 cut(s) 328, 348, 450
HindII GTYRAC 3 cut(s) 328, 348, 450
HinfI GANTC 7 cut(s) 212, 311, 715, 791, 842, 938, 1178
HpaII CCGG 1 cut(s) 394
HphI GGTGA 2 cut(s) 422, 992
Hpy166II GTNNAC 4 cut(s) 328, 348, 391, 450
Hpy188I TCNGA 7 cut(s) 169, 722, 745, 847, 859, 928, 1022
Hpy188III TCNNGA 9 cut(s) 227, 320, 464, 482, 668, 884, 911, 932, 1190
Hpy8I GTNNAC 4 cut(s) 328, 348, 391, 450
Hpy99I CGWCG 1 cut(s) 454
HpyAV CCTTC 7 cut(s) 33, 174, 578, 665, 678, 688, 1001
HpyCH4III ACNGT 2 cut(s) 971, 1046
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 8 cut(s) 74, 84, 104, 424, 852, 986, 1157, 1169
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 117, 126, 147, 206, 1154
HpyF3I CTNAG 4 cut(s) 512, 719, 846, 925
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 4 cut(s) 39, 244, 382, 960
HspAI GCGC 2 cut(s) 96, 270
Ksp22I TGATCA 2 cut(s) 169, 1192
LguI GCTCTTC 2 cut(s) 22, 602
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 6 cut(s) 85, 86, 88, 159, 209, 259
LweI GCATC 4 cut(s) 61, 98, 459, 973
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 1 cut(s) 755
MlsI TGGCCA 1 cut(s) 342
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 3 cut(s) 221, 320, 1187
MmeI TCCRAC 2 cut(s) 288, 1118
MnlI CCTC 8 cut(s) 52, 67, 398, 490, 552, 634, 702, 934
Mox20I TGGCCA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 342
MseI TTAA 6 cut(s) 354, 774, 786, 831, 866, 974
MslI CAYNNNNRTG 1 cut(s) 1061
Msp20I TGGCCA 1 cut(s) 342
MspCI CTTAAG 1 cut(s) 830
MspI CCGG 1 cut(s) 394
MwoI GCNNNNNNNGC 6 cut(s) 71, 117, 126, 147, 206, 1154
NcoI CCATGG 1 cut(s) 240
NlaIII CATG 4 cut(s) 39, 244, 382, 960
NlaIV GGNNCC 1 cut(s) 1142
PciSI GCTCTTC 2 cut(s) 22, 602
PcsI WCGNNNNNNNCGW 1 cut(s) 455
PfeI GAWTC 4 cut(s) 715, 791, 842, 938
PflFI GACNNNGTC 1 cut(s) 454
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 6 cut(s) 76, 100, 103, 149, 199, 274
PleI GAGTC 3 cut(s) 220, 319, 1186
PpsI GAGTC 3 cut(s) 220, 319, 1186
Ppu21I YACGTR 1 cut(s) 368
PshBI ATTAAT 1 cut(s) 774
PspN4I GGNNCC 1 cut(s) 1142
PspPI GGNCC 1 cut(s) 391
PstI CTGCAG 2 cut(s) 106, 1159
PsyI GACNNNGTC 1 cut(s) 454
RseI CAYNNNNRTG 1 cut(s) 1061
SalI GTCGAC 1 cut(s) 448
SapI GCTCTTC 2 cut(s) 22, 602
SaqAI TTAA 6 cut(s) 354, 774, 786, 831, 866, 974
SatI GCNGC 6 cut(s) 75, 99, 102, 148, 198, 273
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 3 cut(s) 221, 320, 1187
SfaNI GCATC 4 cut(s) 61, 98, 459, 973
SfcI CTRYAG 2 cut(s) 102, 1155
SinI GGWCC 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 3 cut(s) 482, 488, 830
SmoI CTYRAG 3 cut(s) 482, 488, 830
SsiI CCGC 3 cut(s) 127, 209, 1148
SspI AATATT 1 cut(s) 772
SspMI CTAG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 971, 1046
TaiI ACGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 449, 463
TfiI GAWTC 4 cut(s) 715, 791, 842, 938
Tru1I TTAA 6 cut(s) 354, 774, 786, 831, 866, 974
Tru9I TTAA 6 cut(s) 354, 774, 786, 831, 866, 974
TscAI CASTG 2 cut(s) 67, 1051
TseI GCWGC 6 cut(s) 74, 98, 101, 147, 197, 272
TspDTI ATGAA 5 cut(s) 17, 24, 395, 636, 1110
TspRI CASTG 2 cut(s) 67, 1051
Tth111I GACNNNGTC 1 cut(s) 454
Vha464I CTTAAG 1 cut(s) 830
VpaK11BI GGWCC 1 cut(s) 391
VspI ATTAAT 1 cut(s) 774
XapI RAATTY 5 cut(s) 132, 382, 1074, 1185, 1242
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 449
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.