Rh5CG500400

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0009893
Physical Location & Seq
Reverse (-)
69544615 .. 69544968
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG500400.1

Sequence Viewer

Length: 354 bp
ATGGTGAGTTCATTTCCGAGAAGAAAAGACGACTGTTTAACTTGTGATGCAAGAAAAACAAAGAAAATCGAAGGCATATGTCTTGGAACAAAGAAAGAGTATCATACTGCAGAGTACTTTGAGATTTTGGGTGAAATTTGTACTCTGACTGAAGCTGAATTGGTTGGATCAAATTGGAGCGTACACAAAGGCATCTGGAATAATCATGAAGGTTCTGCAGGAATTGCTGCAGATTTCGAGTCACAAATTCTAGGCCAATTAATAGAGGAGCTCGTGGATCAACTCGCTGATTTTCCTACTGAATATTCAAAACCTGTAAGATTTACGACCATTGTAAATTTGGTATTACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

117

Amino Acids

13.14

Weight (kDa)

5.0

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 175, 285
AcsI RAATTY 3 cut(s) 135, 246, 337
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 3 cut(s) 116, 142, 183
AgsI TTSAA 1 cut(s) 309
AluBI AGCT 2 cut(s) 155, 271
AluI AGCT 2 cut(s) 155, 271
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 2 cut(s) 175, 285
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 3 cut(s) 135, 246, 337
AseI ATTAAT 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 16, 143
BanII GRGCYC 1 cut(s) 273
BauI CACGAG 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 214
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 3 cut(s) 108, 216, 228
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 116
BmsI GCATC 2 cut(s) 37, 201
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 214
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 273
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 167, 277
BspANI GGCC 1 cut(s) 255
BspHI TCATGA 1 cut(s) 205
BspMAI CTGCAG 3 cut(s) 112, 220, 232
BspPI GGATC 2 cut(s) 175, 285
BssMI GATC 2 cut(s) 167, 277
BssSI CACGAG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 224
BstKTI GATC 2 cut(s) 170, 280
BstMBI GATC 2 cut(s) 167, 277
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSFI CTRYAG 3 cut(s) 108, 216, 228
BstV1I GCAGC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 255
CciI TCATGA 1 cut(s) 205
Csp6I GTAC 3 cut(s) 115, 141, 182
CviAII CATG 1 cut(s) 206
CviJI RGCY 3 cut(s) 155, 255, 271
CviKI_1 RGCY 3 cut(s) 155, 255, 271
CviQI GTAC 3 cut(s) 115, 141, 182
DpnI GATC 2 cut(s) 169, 279
DpnII GATC 2 cut(s) 167, 277
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 273
FaeI CATG 1 cut(s) 209
FaiI YATR 5 cut(s) 77, 79, 105, 207, 352
FatI CATG 1 cut(s) 205
FauNDI CATATG 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 1 cut(s) 255
Hin1II CATG 1 cut(s) 209
HinfI GANTC 1 cut(s) 239
HphI GGTGA 2 cut(s) 16, 143
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 18, 147
Hpy188III TCNNGA 2 cut(s) 196, 206
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 65, 203
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 4 cut(s) 50, 110, 218, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 2 cut(s) 167, 277
LmnI GCTCC 2 cut(s) 177, 268
LpnPI CCDG 3 cut(s) 181, 204, 327
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 2 cut(s) 37, 201
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 240
MalI GATC 2 cut(s) 169, 279
MboI GATC 2 cut(s) 167, 277
MboII GAAGA 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 7 cut(s) 135, 158, 172, 222, 246, 257, 337
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 1 cut(s) 259
MseI TTAA 2 cut(s) 38, 260
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeI CATATG 1 cut(s) 77
NdeII GATC 2 cut(s) 167, 277
NlaIII CATG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 240
PagI TCATGA 1 cut(s) 205
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 273
PstI CTGCAG 3 cut(s) 112, 220, 232
RsaI GTAC 3 cut(s) 116, 142, 183
RsaNI GTAC 3 cut(s) 115, 141, 182
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 38, 260
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 167, 277
ScaI AGTACT 1 cut(s) 116
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 273
SetI ASST 4 cut(s) 157, 214, 273, 316
SfaNI GCATC 2 cut(s) 37, 201
SfcI CTRYAG 3 cut(s) 108, 216, 228
Sse9I AATT 7 cut(s) 135, 158, 172, 222, 246, 257, 337
SspI AATATT 1 cut(s) 305
SspMI CTAG 1 cut(s) 251
SstI GAGCTC 1 cut(s) 273
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 69, 237
TasI AATT 7 cut(s) 135, 158, 172, 222, 246, 257, 337
TatI WGTACW 2 cut(s) 114, 140
Tru1I TTAA 2 cut(s) 38, 260
Tru9I TTAA 2 cut(s) 38, 260
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 222
VspI ATTAAT 1 cut(s) 260
XapI RAATTY 3 cut(s) 135, 246, 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.