MD11G1072700.v1.1

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009893
Physical Location & Seq
Forward (+)
6176924 .. 6178870
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1072700.v1.1.491

Sequence Viewer

Length: 1146 bp
ATGAAGTTGCTAATTTCTTCCCCTTCTTTTTCTTCATGCTCATCATCATCCAACTCCACTGCTTTTGATGCAACAATGTGCAGTTCAAAAAGCGCCACCGCGGGCTGCATTTCCGGAATTTTGCGCAGAATTCTCTGCAAAGGAAGCTTCCCCACATACCCTTCTGATCACATCCTAGGAGAAGAAAATTCTGTGGCATCTAGTTCCAGAGATCAAGATTTTAATTCCAAGGATAAAACAGAGATCTCTGCCAGTCCAAGCATTGTGGCAAGGCTGATGGGATTGGATTCAATTCCAGACAGGAACTTGGTCAGCAGCCAATCAACCCAAAATTCAATTTCACGCAGCAAATCCATGAATTCTGTGGACCGGTTTGATAAGCGTCGCGGGATGAAGTCGACTCGGTCATTTAGAGAGATGCCTACATTTCTTGAGCCAGAAAATGAGGAATTCTTTATTCTCAGCTTTGAGAGTGAGAGGAAAAGCAAGGAAACAAAATCGAAAGGGAGGAAATGTGAAAAGAGACAAAGCCAACAAACGGAAAACAGAAGAGAAAGAAAGGCAGAGAATAAGAAGCAACTCCAAGGACAAAGCAGAAGGGCTTTGAACGATTTGAATGGGAAAGAGATGCTGAAAAGCAGAAGCACTTCTGGTGAAGATTCAAAAAGTACTTCAATTGCTACAAAGACGACAGAGAAGAAGAAAACTATATGTGATGTGCTTAAGAATGTAGAATCTGAATTCAGCTCTGAAGATTTAAGCCCGGTTTCGGTTCTCGATTGTGCCCAATTTCTTGTTGATACAGAAATCCCTTCTTCAGAAGATTCAAGTTTAGCCAATTCATGCAAAGAAAATGGTCCAAGTGGTGATGCAAGAAGAAAAAAGACAATAGAAGGCAAATGTCTTGGATCAAAGAAGAAAGAATTCCACAGAGCAAAGCACATTGGGATGTGGAGTGAGATTTGTAGGCTGACTGAAGCCGAGTTGGTCGGTTCAAATTGGATCCTACAAAACAAAGGCATGTGGAGTTTTGAAGGTATTTCTGCAGGCATTGGTGCAGATTTCGAGTCACAGATTCTTGGTCAATTATTAGATGAGATTGTTGATCAATTTGCTGACTTTGCCATGGAAATTCAAAATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

382

Amino Acids

42.29

Weight (kDa)

8.43

Isoelectric Point (pI)

65.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 85 - 102 1.3e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 125
AccI GTMKAC 1 cut(s) 398
AccII CGCG 2 cut(s) 101, 387
AccIII TCCGGA 1 cut(s) 113
AciI CCGC 3 cut(s) 99, 101, 387
AclWI GGATC 3 cut(s) 916, 997, 1010
AcsI RAATTY 9 cut(s) 117, 129, 187, 331, 358, 449, 740, 923, 1131
AcuI CTGAAG 3 cut(s) 771, 801, 996
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 2 cut(s) 538, 769
AflII CTTAAG 1 cut(s) 722
AgeI ACCGGT 1 cut(s) 369
AluBI AGCT 3 cut(s) 147, 465, 747
AluI AGCT 3 cut(s) 147, 465, 747
Alw26I GTCTC 1 cut(s) 517
AlwI GGATC 3 cut(s) 916, 997, 1010
Aor13HI TCCGGA 1 cut(s) 113
ApeKI GCWGC 3 cut(s) 105, 315, 345
ApoI RAATTY 9 cut(s) 117, 129, 187, 331, 358, 449, 740, 923, 1131
AsiGI ACCGGT 1 cut(s) 369
Asp700I GAANNNNTTC 2 cut(s) 646, 923
AspA2I CCTAGG 1 cut(s) 175
AspLEI GCGC 2 cut(s) 95, 126
AspS9I GGNCC 2 cut(s) 367, 857
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 2 cut(s) 665, 878
AvaII GGWCC 2 cut(s) 367, 857
AvrII CCTAGG 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 787
BamHI GGATCC 1 cut(s) 1002
BbvI GCAGC 3 cut(s) 92, 327, 357
BccI CCATC 1 cut(s) 271
BclI TGATCA 2 cut(s) 166, 1105
BcnI CCSGG 1 cut(s) 764
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 2 cut(s) 176, 201
BfmI CTRYAG 1 cut(s) 1044
BfoI RGCGCY 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 722
BglII AGATCT 1 cut(s) 243
BisI GCNGC 3 cut(s) 106, 316, 346
BlnI CCTAGG 1 cut(s) 175
BlsI GCNGC 3 cut(s) 107, 317, 347
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 1 cut(s) 764
Bme18I GGWCC 2 cut(s) 367, 857
BmgT120I GGNCC 2 cut(s) 367, 857
BmiI GGNNCC 1 cut(s) 1004
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 5 cut(s) 58, 206, 408, 618, 859
BpuEI CTTGAG 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 764
BsaJI CCNNGG 5 cut(s) 99, 175, 228, 583, 1125
BsaWI WCCGGW 2 cut(s) 113, 369
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 769
Bse118I RCCGGY 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 113
BseDI CCNNGG 5 cut(s) 99, 175, 228, 583, 1125
BseGI GGATG 4 cut(s) 47, 171, 396, 954
BseLI CCNNNNNNNGG 2 cut(s) 538, 769
BseMII CTCAG 1 cut(s) 475
BseNI ACTGG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 3 cut(s) 92, 327, 357
BsgI GTGCAG 2 cut(s) 100, 1077
Bsh1236I CGCG 2 cut(s) 101, 387
BshTI ACCGGT 1 cut(s) 369
BsiSI CCGG 3 cut(s) 114, 370, 764
BslI CCNNNNNNNGG 2 cut(s) 538, 769
BsmAI GTCTC 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 787
Bsp13I TCCGGA 1 cut(s) 113
Bsp143I GATC 6 cut(s) 166, 211, 243, 908, 1002, 1105
Bsp19I CCATGG 1 cut(s) 1125
BspACI CCGC 3 cut(s) 99, 101, 387
BspCNI CTCAG 1 cut(s) 474
BspEI TCCGGA 1 cut(s) 113
BspFNI CGCG 2 cut(s) 101, 387
BspLI GGNNCC 1 cut(s) 1004
BspMAI CTGCAG 1 cut(s) 1048
BspPI GGATC 3 cut(s) 916, 997, 1010
BspTI CTTAAG 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 369
BsrI ACTGG 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 369
BssECI CCNNGG 5 cut(s) 99, 175, 228, 583, 1125
BssMI GATC 6 cut(s) 166, 211, 243, 908, 1002, 1105
BssT1I CCWWGG 4 cut(s) 175, 228, 583, 1125
Bst6I CTCTTC 1 cut(s) 544
BstAFI CTTAAG 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 103, 1048
BstDEI CTNAG 1 cut(s) 461
BstDSI CCRYGG 2 cut(s) 99, 1125
BstF5I GGATG 4 cut(s) 47, 171, 396, 954
BstFNI CGCG 2 cut(s) 101, 387
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 126
BstKTI GATC 6 cut(s) 169, 214, 246, 911, 1005, 1108
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 6 cut(s) 166, 211, 243, 908, 1002, 1105
BstMWI GCNNNNNNNGC 3 cut(s) 68, 144, 1121
BstNSI RCATGY 1 cut(s) 1024
BstSCI CCNGG 1 cut(s) 762
BstSFI CTRYAG 1 cut(s) 1044
BstSLI GKGCMC 1 cut(s) 787
BstUI CGCG 2 cut(s) 101, 387
BstV1I GCAGC 3 cut(s) 92, 327, 357
BstX2I RGATCY 2 cut(s) 243, 1002
BstYI RGATCY 2 cut(s) 243, 1002
BtgI CCRYGG 2 cut(s) 99, 1125
BtsCI GGATG 4 cut(s) 47, 171, 396, 954
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 103, 1048
CfoI GCGC 2 cut(s) 95, 126
Cfr10I RCCGGY 1 cut(s) 369
Cfr13I GGNCC 2 cut(s) 367, 857
Cfr42I CCGCGG 1 cut(s) 102
CseI GACGC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 669
CspAI ACCGGT 1 cut(s) 369
CspCI CAANNNNNGTGG 4 cut(s) 46, 81, 246, 281
CviAII CATG 5 cut(s) 36, 355, 843, 1021, 1126
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 1 cut(s) 461
DpnI GATC 6 cut(s) 168, 213, 245, 910, 1004, 1107
DpnII GATC 6 cut(s) 166, 211, 243, 908, 1002, 1105
Eam1104I CTCTTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 544
Eco130I CCWWGG 4 cut(s) 175, 228, 583, 1125
Eco47I GGWCC 2 cut(s) 367, 857
Eco57I CTGAAG 3 cut(s) 771, 801, 996
EcoRI GAATTC 5 cut(s) 129, 358, 449, 740, 923
EcoT14I CCWWGG 4 cut(s) 175, 228, 583, 1125
ErhI CCWWGG 4 cut(s) 175, 228, 583, 1125
FaeI CATG 5 cut(s) 39, 358, 846, 1024, 1129
FaiI YATR 8 cut(s) 37, 157, 356, 710, 712, 844, 1022, 1127
FatI CATG 5 cut(s) 35, 354, 842, 1020, 1125
FauI CCCGC 2 cut(s) 94, 380
FbaI TGATCA 2 cut(s) 166, 1105
FblI GTMKAC 1 cut(s) 398
Fnu4HI GCNGC 3 cut(s) 106, 316, 346
FokI GGATG 4 cut(s) 34, 158, 403, 961
Fsp4HI GCNGC 3 cut(s) 106, 316, 346
FspBI CTAG 2 cut(s) 176, 201
FspI TGCGCA 1 cut(s) 125
GlaI GCGC 2 cut(s) 94, 125
GluI GCNGC 3 cut(s) 106, 316, 346
HaeII RGCGCY 1 cut(s) 96
HapII CCGG 3 cut(s) 114, 370, 764
HgaI GACGC 1 cut(s) 371
HhaI GCGC 2 cut(s) 95, 126
Hin1II CATG 5 cut(s) 39, 358, 846, 1024, 1129
Hin6I GCGC 2 cut(s) 93, 124
HinP1I GCGC 2 cut(s) 93, 124
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 7 cut(s) 287, 400, 659, 734, 824, 1067, 1075
HpaII CCGG 3 cut(s) 114, 370, 764
HphI GGTGA 2 cut(s) 665, 878
Hpy166II GTNNAC 2 cut(s) 367, 399
Hpy188I TCNGA 4 cut(s) 166, 739, 751, 820
Hpy188III TCNNGA 6 cut(s) 114, 207, 215, 296, 431, 776
Hpy8I GTNNAC 2 cut(s) 367, 399
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 6 cut(s) 33, 171, 591, 822, 887, 1028
HpyCH4V TGCA 8 cut(s) 71, 81, 108, 138, 846, 872, 1046, 1058
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 144, 1121
HpyF3I CTNAG 1 cut(s) 461
Hsp92II CATG 5 cut(s) 39, 358, 846, 1024, 1129
HspAI GCGC 2 cut(s) 93, 124
Kpn2I TCCGGA 1 cut(s) 113
Ksp22I TGATCA 2 cut(s) 166, 1105
KspI CCGCGG 1 cut(s) 102
Kzo9I GATC 6 cut(s) 166, 211, 243, 908, 1002, 1105
Lsp1109I GCAGC 3 cut(s) 92, 327, 357
LweI GCATC 5 cut(s) 58, 206, 408, 618, 859
MaeI CTAG 2 cut(s) 176, 201
MaeIII GTNAC 1 cut(s) 1068
MalI GATC 6 cut(s) 168, 213, 245, 910, 1004, 1107
MboI GATC 6 cut(s) 166, 211, 243, 908, 1002, 1105
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 2 cut(s) 243, 1002
MhlI GDGCHC 1 cut(s) 787
MlyI GAGTC 2 cut(s) 394, 1076
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 3 cut(s) 439, 471, 501
MroI TCCGGA 1 cut(s) 113
MroXI GAANNNNTTC 2 cut(s) 646, 923
MseI TTAA 3 cut(s) 222, 723, 758
MslI CAYNNNNRTG 1 cut(s) 947
MspA1I CMGCKG 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 722
MspI CCGG 3 cut(s) 114, 370, 764
MspR9I CCNGG 1 cut(s) 764
MunI CAATTG 1 cut(s) 675
MvnI CGCG 2 cut(s) 101, 387
MwoI GCNNNNNNNGC 3 cut(s) 68, 144, 1121
NciI CCSGG 1 cut(s) 764
NcoI CCATGG 1 cut(s) 1125
NdeII GATC 6 cut(s) 166, 211, 243, 908, 1002, 1105
NlaIII CATG 5 cut(s) 39, 358, 846, 1024, 1129
NlaIV GGNNCC 1 cut(s) 1004
NmeAIII GCCGAG 1 cut(s) 1006
NmuCI GTSAC 1 cut(s) 1068
NsbI TGCGCA 1 cut(s) 125
NspI RCATGY 1 cut(s) 1024
PdmI GAANNNNTTC 2 cut(s) 646, 923
PfeI GAWTC 5 cut(s) 287, 659, 734, 824, 1075
PflFI GACNNNGTC 1 cut(s) 403
PinAI ACCGGT 1 cut(s) 369
PkrI GCNGC 3 cut(s) 107, 317, 347
PleI GAGTC 2 cut(s) 394, 1075
PpsI GAGTC 2 cut(s) 394, 1075
PspN4I GGNNCC 1 cut(s) 1004
PspPI GGNCC 2 cut(s) 367, 857
PstI CTGCAG 1 cut(s) 1048
PsuI RGATCY 2 cut(s) 243, 1002
PsyI GACNNNGTC 1 cut(s) 403
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
RseI CAYNNNNRTG 1 cut(s) 947
SacII CCGCGG 1 cut(s) 102
SalI GTCGAC 1 cut(s) 397
SaqAI TTAA 3 cut(s) 222, 723, 758
SatI GCNGC 3 cut(s) 106, 316, 346
Sau3AI GATC 6 cut(s) 166, 211, 243, 908, 1002, 1105
Sau96I GGNCC 2 cut(s) 367, 857
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 2 cut(s) 394, 1076
ScrFI CCNGG 1 cut(s) 764
SduI GDGCHC 1 cut(s) 787
SetI ASST 4 cut(s) 149, 467, 749, 1039
SfaNI GCATC 5 cut(s) 58, 206, 408, 618, 859
SfcI CTRYAG 1 cut(s) 1044
Sfr303I CCGCGG 1 cut(s) 102
SgrBI CCGCGG 1 cut(s) 102
SinI GGWCC 2 cut(s) 367, 857
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 2 cut(s) 431, 722
SmoI CTYRAG 2 cut(s) 431, 722
SsiI CCGC 3 cut(s) 99, 101, 387
SspMI CTAG 2 cut(s) 176, 201
StyD4I CCNGG 1 cut(s) 762
StyI CCWWGG 4 cut(s) 175, 228, 583, 1125
TaqI TCGA 4 cut(s) 398, 500, 777, 1065
TaqII GACCGA 1 cut(s) 393
TatI WGTACW 1 cut(s) 668
TfiI GAWTC 5 cut(s) 287, 659, 734, 824, 1075
Tru1I TTAA 3 cut(s) 222, 723, 758
Tru9I TTAA 3 cut(s) 222, 723, 758
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 1068
TseI GCWGC 3 cut(s) 105, 315, 345
Tsp45I GTSAC 1 cut(s) 1068
TspDTI ATGAA 5 cut(s) 17, 24, 371, 407, 831
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 1 cut(s) 64
Tth111I GACNNNGTC 1 cut(s) 403
Vha464I CTTAAG 1 cut(s) 722
VpaK11BI GGWCC 2 cut(s) 367, 857
XapI RAATTY 9 cut(s) 117, 129, 187, 331, 358, 449, 740, 923, 1131
XceI RCATGY 1 cut(s) 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XmaJI CCTAGG 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 398
XmnI GAANNNNTTC 2 cut(s) 646, 923
XspI CTAG 2 cut(s) 176, 201
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.