FvH4_3g38760

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009893
Physical Location & Seq
Reverse (-)
33038425 .. 33040481
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38760.t1

Sequence Viewer

Length: 1218 bp
ATGAAGTTGCTATCTTCTTCTGAATCCTCTCCTTTTTCTTCTTTTTCTTCGTGTTCATCATCCACCATCACCACCACCACCACCACTTTTGATCTAACCAATTCAAAAGGTGCTACTAATGGATGCATTGCTGGTATTTTGCGCAGAATTCTCTGCTATGGTAGCTTGCCTACATACCCTTCTGATCATATCCCAGAAGAATCCAATTCTGTTGATAAATCTCGACATGATCGGCATTTCAAGTCGAAAGAGAAAGCAGAGGAAACAGAGTCTTCTGCCACACCAAGCTTAGTGGCAAGGCTAATGGGGCTGGAGTCAGTTCCAGCTGCCACCCTGCTCTCGATTTCAAATTCGATATCCCGTAGCCGGTCTCTGAATTCTGTGGACCGGCTTTCGGGAGACCATGATCCAATTCAAGCACATGAGCGCCGACGAGTCAAGTCGTTAAGAGAGATGCCAACATTTATTGAAAGTGAGGAATTCCTTGTTCTTAGCTTCGAGAATGGGAGTGAAAGAAAAGAAAGGAGATCGAAAGGGAGGAAATGTGAAACGGGCCATGGAGAGTTGAGGAAGAAGGAAGCAGGAAAGAGCAGAAACAAGGAAAATAGAAAAGAAAGAGGGCTTCAGAAGGAAAAGCAGCAAGTTCAAGAAGAAAAGAGCACAAGGGTTTTGAAAGATTTGAATGGGAGGGAAATGCAAAGAAGCAAAACCTCTCATAAACCCAAGAAAGAGACCATCTGTGATGTGCTTAACAATGTAGAATCTGATTGTACCTCGGAAGATTTAAGCCCGGTTTCTGTCCTTGATTATGGTCAGTTACTTGTTGATAATGAAGCTCCTACATCAGAAGAAGGTGCAGTCTTGGCCAGTTCATTTCCCAGAAGAAAAGAGGACTGTTTGACTTGTGATGCAAGAAAAACAAAGAATATTGAAGGGAAAGGTCTTGCAACAATGAAGAAAGAGTATCGTACTGAAGAGTACTTTGCGATTTTGGATGAAATTTGTAGTCTGACTGAAGCTGAATTGGTTGGATCAAATTGGAGCGTACACAAAGGCATCTGGAATAATCATGAAGGTTTTGCAGGAATAGTTGCAGATTTTGAGTCGCAAATTCTAGGCCAACTGATAGAGGAGCTTGTAGATCAACTTGCGGATTTTCCTACTAGAAATTCAAAACCTGTAAGATTTACCACCATTGTAAATTTGGTATTACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

406

Amino Acids

45.26

Weight (kDa)

6.55

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 87 - 111 7.4e-08 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 143
AciI CCGC 1 cut(s) 1151
AclWI GGATC 2 cut(s) 401, 1039
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 8 cut(s) 147, 349, 376, 479, 999, 1110, 1168, 1201
AcuI CTGAAG 3 cut(s) 608, 993, 1035
AfaI GTAC 4 cut(s) 772, 970, 980, 1047
AfiI CCNNNNNNNGG 2 cut(s) 366, 394
AluBI AGCT 7 cut(s) 165, 288, 326, 495, 836, 1019, 1135
AluI AGCT 7 cut(s) 165, 288, 326, 495, 836, 1019, 1135
Alw21I GWGCWC 1 cut(s) 662
Alw26I GTCTC 3 cut(s) 375, 393, 725
AlwI GGATC 2 cut(s) 401, 1039
AoxI GGCC 3 cut(s) 553, 864, 1117
ApeKI GCWGC 2 cut(s) 326, 637
ApoI RAATTY 8 cut(s) 147, 349, 376, 479, 999, 1110, 1168, 1201
AspLEI GCGC 2 cut(s) 144, 429
AspS9I GGNCC 2 cut(s) 385, 553
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 662
BbvI GCAGC 2 cut(s) 313, 649
BccI CCATC 2 cut(s) 74, 743
BclI TGATCA 1 cut(s) 184
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 3 cut(s) 375, 393, 725
BfaI CTAG 2 cut(s) 1115, 1164
BfoI RGCGCY 1 cut(s) 430
BisI GCNGC 2 cut(s) 327, 638
BlsI GCNGC 2 cut(s) 328, 639
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 1 cut(s) 791
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 385, 553
BmrFI CCNGG 1 cut(s) 791
BmsI GCATC 4 cut(s) 113, 444, 898, 1065
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 791
BsaI GGTCTC 3 cut(s) 375, 393, 725
BsaJI CCNNGG 2 cut(s) 556, 774
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 394
Bse118I RCCGGY 2 cut(s) 366, 387
Bse1I ACTGG 1 cut(s) 867
Bse3DI GCAATG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 556, 774
BseGI GGATG 3 cut(s) 59, 128, 1000
BseLI CCNNNNNNNGG 2 cut(s) 366, 394
BseMI GCAATG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 867
BseRI GAGGAG 1 cut(s) 1145
BseXI GCAGC 2 cut(s) 313, 649
BsgI GTGCAG 1 cut(s) 876
BshFI GGCC 3 cut(s) 555, 866, 1119
BsiHKAI GWGCWC 1 cut(s) 662
BsiSI CCGG 3 cut(s) 367, 388, 791
BslI CCNNNNNNNGG 2 cut(s) 366, 394
BsmAI GTCTC 3 cut(s) 375, 393, 725
BsnI GGCC 3 cut(s) 555, 866, 1119
Bso31I GGTCTC 3 cut(s) 375, 393, 725
Bsp1286I GDGCHC 1 cut(s) 662
Bsp143I GATC 7 cut(s) 91, 184, 229, 406, 527, 1031, 1141
Bsp19I CCATGG 1 cut(s) 556
BspACI CCGC 1 cut(s) 1151
BspANI GGCC 3 cut(s) 555, 866, 1119
BspHI TCATGA 1 cut(s) 1069
BspPI GGATC 2 cut(s) 401, 1039
BspTNI GGTCTC 3 cut(s) 375, 393, 725
BsrDI GCAATG 1 cut(s) 126
BsrFI RCCGGY 2 cut(s) 366, 387
BsrI ACTGG 1 cut(s) 867
BssAI RCCGGY 2 cut(s) 366, 387
BssECI CCNNGG 2 cut(s) 556, 774
BssMI GATC 7 cut(s) 91, 184, 229, 406, 527, 1031, 1141
BssT1I CCWWGG 1 cut(s) 556
Bst4CI ACNGT 1 cut(s) 896
Bst6I CTCTTC 1 cut(s) 969
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 289, 491
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 3 cut(s) 59, 128, 1000
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 2 cut(s) 144, 429
BstKTI GATC 7 cut(s) 94, 187, 232, 409, 530, 1034, 1144
BstMAI GTCTC 3 cut(s) 375, 393, 725
BstMBI GATC 7 cut(s) 91, 184, 229, 406, 527, 1031, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 162, 307, 863
BstSCI CCNGG 1 cut(s) 789
BstV1I GCAGC 2 cut(s) 313, 649
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 3 cut(s) 555, 866, 1119
BtgI CCRYGG 1 cut(s) 556
BtsCI GGATG 3 cut(s) 59, 128, 1000
Cac8I GCNNGC 1 cut(s) 167
CciI TCATGA 1 cut(s) 1069
CfoI GCGC 2 cut(s) 144, 429
Cfr10I RCCGGY 2 cut(s) 366, 387
Cfr13I GGNCC 2 cut(s) 385, 553
Csp6I GTAC 4 cut(s) 771, 969, 979, 1046
CspCI CAANNNNNGTGG 4 cut(s) 70, 105, 273, 308
CviAII CATG 5 cut(s) 227, 404, 422, 557, 1070
CviQI GTAC 4 cut(s) 771, 969, 979, 1046
DdeI CTNAG 2 cut(s) 289, 491
DpnI GATC 7 cut(s) 93, 186, 231, 408, 529, 1033, 1143
DpnII GATC 7 cut(s) 91, 184, 229, 406, 527, 1031, 1141
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 1 cut(s) 969
EarI CTCTTC 1 cut(s) 969
Eco130I CCWWGG 1 cut(s) 556
Eco31I GGTCTC 3 cut(s) 375, 393, 725
Eco32I GATATC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 3 cut(s) 608, 993, 1035
EcoRI GAATTC 3 cut(s) 147, 376, 479
EcoRV GATATC 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 556
EcoT22I ATGCAT 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 5 cut(s) 230, 407, 425, 560, 1073
FatI CATG 5 cut(s) 226, 403, 421, 556, 1069
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 327, 638
FokI GGATG 3 cut(s) 46, 135, 1007
Fsp4HI GCNGC 2 cut(s) 327, 638
FspBI CTAG 2 cut(s) 1115, 1164
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 2 cut(s) 143, 428
GluI GCNGC 2 cut(s) 327, 638
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 430
HaeIII GGCC 3 cut(s) 555, 866, 1119
HapII CCGG 3 cut(s) 367, 388, 791
HhaI GCGC 2 cut(s) 144, 429
Hin1II CATG 5 cut(s) 230, 407, 425, 560, 1073
Hin6I GCGC 2 cut(s) 142, 427
HinP1I GCGC 2 cut(s) 142, 427
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 7 cut(s) 23, 200, 269, 314, 435, 761, 1103
HpaII CCGG 3 cut(s) 367, 388, 791
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 385, 1048
Hpy188I TCNGA 8 cut(s) 22, 184, 375, 627, 766, 778, 847, 1011
Hpy188III TCNNGA 7 cut(s) 222, 340, 396, 499, 647, 1060, 1070
Hpy8I GTNNAC 2 cut(s) 385, 1048
Hpy99I CGWCG 1 cut(s) 435
HpyAV CCTTC 6 cut(s) 189, 568, 622, 845, 926, 1067
HpyCH4III ACNGT 1 cut(s) 896
HpyCH4V TGCA 7 cut(s) 126, 697, 857, 911, 947, 1082, 1094
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 307, 863
HpyF3I CTNAG 2 cut(s) 289, 491
Hsp92II CATG 5 cut(s) 230, 407, 425, 560, 1073
HspAI GCGC 2 cut(s) 142, 427
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 7 cut(s) 91, 184, 229, 406, 527, 1031, 1141
LmnI GCTCC 3 cut(s) 841, 1041, 1132
Lsp1109I GCAGC 2 cut(s) 313, 649
LweI GCATC 4 cut(s) 113, 444, 898, 1065
MaeI CTAG 2 cut(s) 1115, 1164
MaeIII GTNAC 1 cut(s) 816
MalI GATC 7 cut(s) 93, 186, 231, 408, 529, 1033, 1143
MboI GATC 7 cut(s) 91, 184, 229, 406, 527, 1031, 1141
MhlI GDGCHC 1 cut(s) 662
MlsI TGGCCA 1 cut(s) 866
MluNI TGGCCA 1 cut(s) 866
MlyI GAGTC 4 cut(s) 278, 323, 444, 1112
MmeI TCCRAC 1 cut(s) 1009
Mox20I TGGCCA 1 cut(s) 866
Mph1103I ATGCAT 1 cut(s) 128
MscI TGGCCA 1 cut(s) 866
MseI TTAA 3 cut(s) 446, 750, 785
Msp20I TGGCCA 1 cut(s) 866
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 3 cut(s) 367, 388, 791
MspR9I CCNGG 1 cut(s) 791
MwoI GCNNNNNNNGC 3 cut(s) 162, 307, 863
NciI CCSGG 1 cut(s) 791
NcoI CCATGG 1 cut(s) 556
NdeII GATC 7 cut(s) 91, 184, 229, 406, 527, 1031, 1141
NlaIII CATG 5 cut(s) 230, 407, 425, 560, 1073
NsbI TGCGCA 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 128
PagI TCATGA 1 cut(s) 1069
PfeI GAWTC 3 cut(s) 23, 200, 761
PkrI GCNGC 2 cut(s) 328, 639
PleI GAGTC 4 cut(s) 277, 322, 443, 1111
PpsI GAGTC 4 cut(s) 277, 322, 443, 1111
PspPI GGNCC 2 cut(s) 385, 553
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 4 cut(s) 772, 970, 980, 1047
RsaNI GTAC 4 cut(s) 771, 969, 979, 1046
SaqAI TTAA 3 cut(s) 446, 750, 785
SatI GCNGC 2 cut(s) 327, 638
Sau3AI GATC 7 cut(s) 91, 184, 229, 406, 527, 1031, 1141
Sau96I GGNCC 2 cut(s) 385, 553
ScaI AGTACT 1 cut(s) 980
SchI GAGTC 4 cut(s) 278, 323, 444, 1112
ScrFI CCNGG 1 cut(s) 791
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 4 cut(s) 113, 444, 898, 1065
SinI GGWCC 1 cut(s) 385
SsiI CCGC 1 cut(s) 1151
SspI AATATT 1 cut(s) 928
SspMI CTAG 2 cut(s) 1115, 1164
StyD4I CCNGG 1 cut(s) 789
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 1 cut(s) 896
TaqI TCGA 6 cut(s) 223, 245, 341, 353, 498, 530
TatI WGTACW 1 cut(s) 978
TfiI GAWTC 3 cut(s) 23, 200, 761
Tru1I TTAA 3 cut(s) 446, 750, 785
Tru9I TTAA 3 cut(s) 446, 750, 785
TseI GCWGC 2 cut(s) 326, 637
TspDTI ATGAA 7 cut(s) 17, 45, 846, 861, 968, 1011, 1086
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 8 cut(s) 147, 349, 376, 479, 999, 1110, 1168, 1201
XcmI CCANNNNNNNNNTGG 1 cut(s) 1201
XspI CTAG 2 cut(s) 1115, 1164
ZrmI AGTACT 1 cut(s) 980
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.