RchiOBHm_Chr5g0069911

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0009893
Physical Location & Seq
Reverse (-)
75761910 .. 75763535
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34528

Sequence Viewer

Length: 1200 bp
ATGAAGTTGCTATCTTCTTCTGAATCCTCTCCTTTTTCTTCTTTTTCTTCGTGTTCATCATCCACCACCACTTTTGATCTAACCAATTCAAAAGGTGCTACTAATGGATGCATTGCTGGCATTTTGCGCAGAATTCTCTGCTATGGTAGCTTGCCTACATACCCTTCTGATCATATCTCAGAAGAAACCAATTCTGTCGATCAATCTCAAAATGATCGAGCATTCAAGTCGAAAAACAAAACAAAGGAAACAGAGGCATCTGCCACTCCAAGCTTAGTGGCAAGGTTAATGGGGTTGGAGTCAATTCCAGATGCCAACTTGGTCTCCACCCCAAATTCAATATCCCGTAGCCGGTCTATGAATTCTGTGGACCGGCTTTCGGGAGACCATGATCCAATCGAGGCACATGAGCGCCGACGAGTCAAGTCGTTTAGAGAGATGCCAACATTTATTGAAAATGAGGAATTCCTTGTTCTTAGCTTTGAGAATGGGCGTGAAAGCAAAGAAAGGAGATCGAAGGGGAGGAAATGTGAGACGGGCCATGGAGAATTGAGGAAGAAGAAGGCAGGAAAGAGCAGAAACAAGGGAAATAGAAAACAAAGAGGGTTTGAGAAGGAAAAGAAGCAAGTTCAAGAAGAAAAAAGCAGAAGGGTTTTGAAAGATTTGAATGGGAGGGAAATGCTAAGAAGCAAAACCTCTCATAAACCCAAGAAAGAGACCATCTTTGATATGCTTAAGAATGTAGAATCTGATTGTACCTCGGAAGATTTAAGCCCGGTTTCTGTCCTTGATTGTGGTCAGTTTCTAGTTGATAACGAAGTTCCTACATCAGAAGAAGATCCAGTCTTGGTGAGTTCATTTCCGAGAAGAAAAGACGACTGCTTAACTTGTGATGCAAGAAAAACAAAGAAAATCGAAGGCATATGTCTTGGAACAAAGAAAGAGTATCATACTGCAGAGTACTTTGAGATTTTGGGTGAAATTTGTACTCTGACTGAAGCTGAATTGGTTGGGTCAAATTGGAGCGTACACAAAGGCATCTGGAATAATCATGAAGGTTCTGCAGGAATTGCTGCAGATTTCGAGTCACAAATTCTAGGCCAATTAATAGAGGAGCTCGTGGATCAACTCGCTGATTTTTCTACTGAATATTCAAAACCTGTAAGATTTACGACCATTGTAAATTTGGTATTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

399

Amino Acids

44.7

Weight (kDa)

7.08

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 89 - 106 5.9e-08 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 128
AclWI GGATC 3 cut(s) 386, 833, 1131
AcsI RAATTY 7 cut(s) 132, 334, 361, 464, 981, 1092, 1183
AcuI CTGAAG 1 cut(s) 1017
AfaI GTAC 4 cut(s) 757, 962, 988, 1029
AfiI CCNNNNNNNGG 2 cut(s) 351, 379
AflII CTTAAG 1 cut(s) 734
AgsI TTSAA 8 cut(s) 90, 226, 339, 455, 632, 658, 667, 1155
AluBI AGCT 5 cut(s) 150, 273, 480, 1001, 1117
AluI AGCT 5 cut(s) 150, 273, 480, 1001, 1117
Alw21I GWGCWC 1 cut(s) 1119
Alw26I GTCTC 4 cut(s) 328, 378, 527, 710
AlwI GGATC 3 cut(s) 386, 833, 1131
AoxI GGCC 2 cut(s) 538, 1099
ApeKI GCWGC 1 cut(s) 1073
ApoI RAATTY 7 cut(s) 132, 334, 361, 464, 981, 1092, 1183
AseI ATTAAT 1 cut(s) 1106
AspLEI GCGC 2 cut(s) 129, 414
AspS9I GGNCC 2 cut(s) 370, 538
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 2 cut(s) 862, 989
AvaII GGWCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 1119
BauI CACGAG 1 cut(s) 1118
Bbv12I GWGCWC 1 cut(s) 1119
BbvI GCAGC 1 cut(s) 1060
BccI CCATC 1 cut(s) 728
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 1 cut(s) 776
BcoDI GTCTC 4 cut(s) 328, 378, 527, 710
BfaI CTAG 2 cut(s) 806, 1097
BfmI CTRYAG 3 cut(s) 954, 1062, 1074
BfoI RGCGCY 1 cut(s) 415
BfrI CTTAAG 1 cut(s) 734
BisI GCNGC 1 cut(s) 1074
BlsI GCNGC 1 cut(s) 1075
BmcAI AGTACT 1 cut(s) 962
Bme1390I CCNGG 1 cut(s) 776
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 370, 538
BmrFI CCNGG 1 cut(s) 776
BmsI GCATC 6 cut(s) 98, 266, 301, 429, 883, 1047
BpuMI CCSGG 1 cut(s) 776
BsaI GGTCTC 3 cut(s) 328, 378, 710
BsaJI CCNNGG 2 cut(s) 541, 759
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 514, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 379
Bse118I RCCGGY 2 cut(s) 351, 372
Bse1I ACTGG 1 cut(s) 842
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 541, 759
BseGI GGATG 2 cut(s) 59, 113
BseLI CCNNNNNNNGG 2 cut(s) 351, 379
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 1 cut(s) 1127
BseXI GCAGC 1 cut(s) 1060
BshFI GGCC 2 cut(s) 540, 1101
BsiHKAI GWGCWC 1 cut(s) 1119
BsiSI CCGG 3 cut(s) 352, 373, 776
BslI CCNNNNNNNGG 2 cut(s) 351, 379
BsmAI GTCTC 4 cut(s) 328, 378, 527, 710
BsmBI CGTCTC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 2 cut(s) 540, 1101
Bso31I GGTCTC 3 cut(s) 328, 378, 710
Bsp1286I GDGCHC 1 cut(s) 1119
Bsp143I GATC 8 cut(s) 76, 169, 199, 214, 391, 512, 838, 1123
Bsp19I CCATGG 1 cut(s) 541
BspANI GGCC 2 cut(s) 540, 1101
BspCNI CTCAG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 1051
BspMAI CTGCAG 3 cut(s) 958, 1066, 1078
BspPI GGATC 3 cut(s) 386, 833, 1131
BspTI CTTAAG 1 cut(s) 734
BspTNI GGTCTC 3 cut(s) 328, 378, 710
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 351, 372
BsrI ACTGG 1 cut(s) 842
BssAI RCCGGY 2 cut(s) 351, 372
BssECI CCNNGG 2 cut(s) 541, 759
BssMI GATC 8 cut(s) 76, 169, 199, 214, 391, 512, 838, 1123
BssSI CACGAG 1 cut(s) 1118
BssT1I CCWWGG 1 cut(s) 541
Bst2BI CACGAG 1 cut(s) 1118
BstAFI CTTAAG 1 cut(s) 734
BstAPI GCANNNNNTGC 1 cut(s) 1070
BstC8I GCNNGC 2 cut(s) 118, 152
BstDEI CTNAG 4 cut(s) 178, 274, 476, 683
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 2 cut(s) 59, 113
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 2 cut(s) 129, 414
BstKTI GATC 8 cut(s) 79, 172, 202, 217, 394, 515, 841, 1126
BstMAI GTCTC 4 cut(s) 328, 378, 527, 710
BstMBI GATC 8 cut(s) 76, 169, 199, 214, 391, 512, 838, 1123
BstMWI GCNNNNNNNGC 4 cut(s) 117, 126, 147, 1070
BstSCI CCNGG 1 cut(s) 774
BstSFI CTRYAG 3 cut(s) 954, 1062, 1074
BstV1I GCAGC 1 cut(s) 1060
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
BsuRI GGCC 2 cut(s) 540, 1101
BtgI CCRYGG 1 cut(s) 541
BtsCI GGATG 2 cut(s) 59, 113
Cac8I GCNNGC 2 cut(s) 118, 152
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 2 cut(s) 129, 414
Cfr10I RCCGGY 2 cut(s) 351, 372
Cfr13I GGNCC 2 cut(s) 370, 538
Csp6I GTAC 4 cut(s) 756, 961, 987, 1028
CspCI CAANNNNNGTGG 4 cut(s) 55, 90, 258, 293
CviAII CATG 4 cut(s) 389, 407, 542, 1052
CviQI GTAC 4 cut(s) 756, 961, 987, 1028
DdeI CTNAG 4 cut(s) 178, 274, 476, 683
DpnI GATC 8 cut(s) 78, 171, 201, 216, 393, 514, 840, 1125
DpnII GATC 8 cut(s) 76, 169, 199, 214, 391, 512, 838, 1123
Ecl136II GAGCTC 1 cut(s) 1117
Eco130I CCWWGG 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 1119
Eco31I GGTCTC 3 cut(s) 328, 378, 710
Eco47I GGWCC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 1117
Eco57I CTGAAG 1 cut(s) 1017
EcoICRI GAGCTC 1 cut(s) 1117
EcoRI GAATTC 3 cut(s) 132, 361, 464
EcoT14I CCWWGG 1 cut(s) 541
EcoT22I ATGCAT 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 1119
ErhI CCWWGG 1 cut(s) 541
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 4 cut(s) 392, 410, 545, 1055
FatI CATG 4 cut(s) 388, 406, 541, 1051
FauNDI CATATG 1 cut(s) 923
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 1074
FokI GGATG 2 cut(s) 46, 120
FriOI GRGCYC 1 cut(s) 1119
Fsp4HI GCNGC 1 cut(s) 1074
FspBI CTAG 2 cut(s) 806, 1097
FspI TGCGCA 1 cut(s) 128
GlaI GCGC 2 cut(s) 128, 413
GluI GCNGC 1 cut(s) 1074
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 2 cut(s) 540, 1101
HapII CCGG 3 cut(s) 352, 373, 776
HhaI GCGC 2 cut(s) 129, 414
Hin1II CATG 4 cut(s) 392, 410, 545, 1055
Hin6I GCGC 2 cut(s) 127, 412
HinP1I GCGC 2 cut(s) 127, 412
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 5 cut(s) 23, 299, 420, 746, 1085
HpaII CCGG 3 cut(s) 352, 373, 776
HphI GGTGA 2 cut(s) 862, 989
Hpy166II GTNNAC 2 cut(s) 370, 1030
Hpy188I TCNGA 8 cut(s) 22, 169, 181, 751, 763, 832, 864, 993
Hpy188III TCNNGA 5 cut(s) 308, 381, 632, 1042, 1052
Hpy8I GTNNAC 2 cut(s) 370, 1030
Hpy99I CGWCG 1 cut(s) 420
HpyAV CCTTC 7 cut(s) 174, 511, 556, 607, 642, 911, 1049
HpyCH4V TGCA 5 cut(s) 111, 896, 956, 1064, 1076
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 126, 147, 1070
HpyF3I CTNAG 4 cut(s) 178, 274, 476, 683
Hsp92II CATG 4 cut(s) 392, 410, 545, 1055
HspAI GCGC 2 cut(s) 127, 412
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 8 cut(s) 76, 169, 199, 214, 391, 512, 838, 1123
LmnI GCTCC 2 cut(s) 1023, 1114
Lsp1109I GCAGC 1 cut(s) 1060
LweI GCATC 6 cut(s) 98, 266, 301, 429, 883, 1047
MaeI CTAG 2 cut(s) 806, 1097
MaeIII GTNAC 1 cut(s) 1086
MalI GATC 8 cut(s) 78, 171, 201, 216, 393, 514, 840, 1125
MboI GATC 8 cut(s) 76, 169, 199, 214, 391, 512, 838, 1123
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 1 cut(s) 1119
MlyI GAGTC 3 cut(s) 308, 429, 1094
MmeI TCCRAC 1 cut(s) 276
Mph1103I ATGCAT 1 cut(s) 113
MseI TTAA 5 cut(s) 287, 735, 770, 884, 1106
MspCI CTTAAG 1 cut(s) 734
MspI CCGG 3 cut(s) 352, 373, 776
MspR9I CCNGG 1 cut(s) 776
Mva1269I GAATGC 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 117, 126, 147, 1070
NciI CCSGG 1 cut(s) 776
NcoI CCATGG 1 cut(s) 541
NdeI CATATG 1 cut(s) 923
NdeII GATC 8 cut(s) 76, 169, 199, 214, 391, 512, 838, 1123
NlaIII CATG 4 cut(s) 392, 410, 545, 1055
NmuCI GTSAC 1 cut(s) 1086
NsbI TGCGCA 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 113
PagI TCATGA 1 cut(s) 1051
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 23, 746
PkrI GCNGC 1 cut(s) 1075
PleI GAGTC 3 cut(s) 307, 428, 1093
PpsI GAGTC 3 cut(s) 307, 428, 1093
PshBI ATTAAT 1 cut(s) 1106
Psp124BI GAGCTC 1 cut(s) 1119
PspPI GGNCC 2 cut(s) 370, 538
PstI CTGCAG 3 cut(s) 958, 1066, 1078
PsuI RGATCY 1 cut(s) 838
RsaI GTAC 4 cut(s) 757, 962, 988, 1029
RsaNI GTAC 4 cut(s) 756, 961, 987, 1028
SacI GAGCTC 1 cut(s) 1119
SaqAI TTAA 5 cut(s) 287, 735, 770, 884, 1106
SatI GCNGC 1 cut(s) 1074
Sau3AI GATC 8 cut(s) 76, 169, 199, 214, 391, 512, 838, 1123
Sau96I GGNCC 2 cut(s) 370, 538
ScaI AGTACT 1 cut(s) 962
SchI GAGTC 3 cut(s) 308, 429, 1094
ScrFI CCNGG 1 cut(s) 776
SduI GDGCHC 1 cut(s) 1119
SfaNI GCATC 6 cut(s) 98, 266, 301, 429, 883, 1047
SfcI CTRYAG 3 cut(s) 954, 1062, 1074
SinI GGWCC 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
SspI AATATT 1 cut(s) 1151
SspMI CTAG 2 cut(s) 806, 1097
SstI GAGCTC 1 cut(s) 1119
StyD4I CCNGG 1 cut(s) 774
StyI CCWWGG 1 cut(s) 541
TaqI TCGA 7 cut(s) 198, 217, 230, 399, 515, 915, 1083
TatI WGTACW 2 cut(s) 960, 986
TfiI GAWTC 2 cut(s) 23, 746
Tru1I TTAA 5 cut(s) 287, 735, 770, 884, 1106
Tru9I TTAA 5 cut(s) 287, 735, 770, 884, 1106
TseFI GTSAC 1 cut(s) 1086
TseI GCWGC 1 cut(s) 1073
Tsp45I GTSAC 1 cut(s) 1086
TspDTI ATGAA 5 cut(s) 17, 45, 374, 846, 1068
Vha464I CTTAAG 1 cut(s) 734
VpaK11BI GGWCC 1 cut(s) 370
VspI ATTAAT 1 cut(s) 1106
XapI RAATTY 7 cut(s) 132, 334, 361, 464, 981, 1092, 1183
XcmI CCANNNNNNNNNTGG 1 cut(s) 1183
XspI CTAG 2 cut(s) 806, 1097
ZrmI AGTACT 1 cut(s) 962
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.