Rorug05G0400700

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009893
Physical Location & Seq
Forward (+)
55077085 .. 55079740
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0400700.1

Sequence Viewer

Length: 1098 bp
ATGGAAATCCAGAGAATTAGCTCAAAGGACTATGTATCTGCTTGGAATTTGGGTGGTCTAGTTGTCACTCAAATGGCTTTAAAAGCTGCAATCGAGCTCAATGTCTTCAATATCATTGCTAATTCAGGACCCGGAGCTCATCTCACATCGAAAGAAATTGTATCTCAAATCTCAAATACAAATCCTAATGCAGCAGCTGCAAATTTGAAGCGAATACTAAGAGTTCTTAGTGTTCATTCTCTGCTATCTGTATCTCAAAGGTCAAGCTCAAGTGGTGATAAGACAATGCTAGAAGAGGCCTATGGTCTAACAAAGGAGACTCTTTGCCTAGTTCCAAATGAAGATGGAGTTTCCTTAGCTCCATATATTATGTTAGCTTCAGATTTGGACGTCGTTAAGTGCTACTCCATGCTCAAAGACACAGTGCTTGAGCCTGGGAGCTTACTTTTCAAGAAGGCTCATGGTATGTCCGCATTTGAGCACATGTTCGACAAACCTGACTTGACAAATTTGTTTAATGAGGCTATAGGCCAAAGTACCATCATCAATTTTGAAGATGTGTTAAAGGTGTACAAAGGTTTTGAAGAGGTAAAAGAGTTGATGGATGTTGGAGGAGGCAATGGAACTACAATTGCCAAAGTAGTAGCTAGCTATCCACACATTCATGGGATTAACTTTGATTTGCCTAATGTTATCGCTCAAGCAACTGCTAAATACCAAGCAGGTGTGAAATATGTTGGTGGAGATATGTTTAAGTTGATACCAAATGCACAGTCCATTATGTTGAAGTGGGTGCTTCATAATTGGGACGATGATCTGTGCAAGAAAATATTAGAACGTTGTTGGGAGGCATTACCTGAAATCGGGAAGGTGATAGTTGTGGAATTTGCATTACCCGAAATACTGGAGAATACCACAGATTTAAAGAAAATTGTGGCATTAGACATCATGATGATGAGTATCTTTAGTAGTAGGCAACGAAAAATTAATGAGTTTGACGGCCTATCGAAAGCTGCAGGCTTTGTTGAAACAAAGATTTTTCCGATTTCACATGGGTGTTATGTTATGGAGTTTCACAAAGTTAAAAAAAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

365

Amino Acids

40.35

Weight (kDa)

6.33

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 21 - 105 2.4e-11 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 135 - 341 5.6e-54 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58630
fragaria_vesca FvH4_3g38760 FvH4_3g38760
malus_domestica MD03G1068300.v1.1 MD11G1072700.v1.1
prunus_persica Prupe.6G056200_v2.0.a1
pyrus_communis pycom03g05470 pycom03g05480 pycom11g06040
rosa_chinensis RchiOBHm_Chr5g0069911
rosa_laevigata RLG00000036107
rosa_multiflora Rmu_ssc0000133.1_g000001
rosa_roxburghii Rroxscaffold_1G00011150
rosa_rugosa Rorug05G0400700
rosa_samantha Rh5AG457800 Rh5BG476600 Rh5BG476700 Rh5CG500400 Rh5CG500500 Rh5DG488500
rosa_wichuraiana Rw5G042750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 713
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 713
AciI CCGC 1 cut(s) 471
AclI AACGTT 1 cut(s) 838
AcsI RAATTY 4 cut(s) 46, 202, 508, 884
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 2 cut(s) 538, 572
AfiI CCNNNNNNNGG 1 cut(s) 863
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 7 cut(s) 109, 208, 451, 554, 584, 787, 1028
AjnI CCWGG 1 cut(s) 433
AleI CACNNNNGTG 1 cut(s) 1054
Alw21I GWGCWC 3 cut(s) 99, 139, 483
Alw26I GTCTC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 3 cut(s) 297, 529, 1000
ApeKI GCWGC 5 cut(s) 86, 191, 194, 197, 1013
ApoI RAATTY 4 cut(s) 46, 202, 508, 884
ArsI GACNNNNNNTTYG 2 cut(s) 758, 790
AseI ATTAAT 1 cut(s) 987
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 287, 883
AsuNHI GCTAGC 1 cut(s) 647
AvaII GGWCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 99, 139
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 3 cut(s) 99, 139, 483
BbvI GCAGC 5 cut(s) 73, 184, 203, 206, 1000
BccI CCATC 3 cut(s) 338, 548, 595
BceAI ACGGC 1 cut(s) 1015
BciT130I CCWGG 1 cut(s) 435
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 4 cut(s) 59, 290, 329, 648
BfmI CTRYAG 2 cut(s) 525, 1014
BfuAI ACCTGC 1 cut(s) 713
BisI GCNGC 5 cut(s) 87, 192, 195, 198, 1014
BlsI GCNGC 5 cut(s) 88, 193, 196, 199, 1015
Bme1390I CCNGG 2 cut(s) 132, 435
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 132, 435
BmtI GCTAGC 1 cut(s) 651
BpiI GAAGAC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BpmI CTGGAG 1 cut(s) 926
Bpu10I CCTNAGC 1 cut(s) 355
BpuEI CTTGAG 3 cut(s) 253, 449, 684
BpuMI CCSGG 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 959
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 434
Bsc4I CCNNNNNNNGG 1 cut(s) 863
Bse1I ACTGG 1 cut(s) 909
Bse3DI GCAATG 2 cut(s) 114, 625
Bse8I GATNNNNATC 1 cut(s) 959
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 1 cut(s) 610
BseJI GATNNNNATC 1 cut(s) 959
BseLI CCNNNNNNNGG 1 cut(s) 863
BseMI GCAATG 2 cut(s) 114, 625
BseNI ACTGG 1 cut(s) 909
BseRI GAGGAG 1 cut(s) 627
BseXI GCAGC 5 cut(s) 73, 184, 203, 206, 1000
BshFI GGCC 3 cut(s) 299, 531, 1002
BsiHKAI GWGCWC 3 cut(s) 99, 139, 483
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 1 cut(s) 863
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 821
BsnI GGCC 3 cut(s) 299, 531, 1002
Bsp1286I GDGCHC 3 cut(s) 99, 139, 483
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 1 cut(s) 814
BspACI CCGC 1 cut(s) 471
BspANI GGCC 3 cut(s) 299, 531, 1002
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 1018
BspMI ACCTGC 1 cut(s) 713
BspOI GCTAGC 1 cut(s) 651
BsrDI GCAATG 2 cut(s) 114, 625
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 1 cut(s) 909
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 1 cut(s) 814
BssNI GRCGYC 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 2 cut(s) 424, 774
Bst6I CTCTTC 2 cut(s) 288, 579
BstACI GRCGYC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 197
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 649, 1018
BstDEI CTNAG 3 cut(s) 218, 227, 355
BstF5I GGATG 1 cut(s) 610
BstKTI GATC 1 cut(s) 817
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 814
BstMWI GCNNNNNNNGC 2 cut(s) 83, 197
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 2 cut(s) 130, 433
BstSFI CTRYAG 2 cut(s) 525, 1014
BstV1I GCAGC 5 cut(s) 73, 184, 203, 206, 1000
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 3 cut(s) 299, 531, 1002
BtsCI GGATG 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 429
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 2 cut(s) 649, 1018
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 948
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 537, 571
CviAII CATG 6 cut(s) 409, 461, 484, 665, 949, 1052
CviQI GTAC 2 cut(s) 537, 571
DdeI CTNAG 3 cut(s) 218, 227, 355
DpnI GATC 1 cut(s) 816
DpnII GATC 1 cut(s) 814
DraI TTTAAA 2 cut(s) 81, 924
Eam1104I CTCTTC 2 cut(s) 288, 579
EarI CTCTTC 2 cut(s) 288, 579
Ecl136II GAGCTC 2 cut(s) 97, 137
Eco147I AGGCCT 1 cut(s) 299
Eco24I GRGCYC 2 cut(s) 99, 139
Eco47I GGWCC 1 cut(s) 128
Eco53kI GAGCTC 2 cut(s) 97, 137
Eco57I CTGAAG 1 cut(s) 363
EcoICRI GAGCTC 2 cut(s) 97, 137
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 433
EcoT38I GRGCYC 2 cut(s) 99, 139
FaeI CATG 6 cut(s) 412, 464, 487, 668, 952, 1055
FaqI GGGAC 1 cut(s) 821
FatI CATG 6 cut(s) 408, 460, 483, 664, 948, 1051
Fnu4HI GCNGC 5 cut(s) 87, 192, 195, 198, 1014
FokI GGATG 1 cut(s) 617
FriOI GRGCYC 2 cut(s) 99, 139
Fsp4HI GCNGC 5 cut(s) 87, 192, 195, 198, 1014
FspBI CTAG 4 cut(s) 59, 290, 329, 648
GluI GCNGC 5 cut(s) 87, 192, 195, 198, 1014
GsuI CTGGAG 1 cut(s) 926
HaeIII GGCC 3 cut(s) 299, 531, 1002
HapII CCGG 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 6 cut(s) 412, 464, 487, 668, 952, 1055
HinfI GANTC 1 cut(s) 319
HpaII CCGG 1 cut(s) 132
HphI GGTGA 2 cut(s) 287, 883
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 2 cut(s) 382, 1044
Hpy188III TCNNGA 5 cut(s) 10, 126, 451, 865, 949
Hpy8I GTNNAC 1 cut(s) 571
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 2 cut(s) 448, 862
HpyCH4III ACNGT 2 cut(s) 424, 774
HpyCH4IV ACGT 2 cut(s) 390, 838
HpyCH4V TGCA 7 cut(s) 89, 191, 200, 770, 822, 890, 1016
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 197
HpyF3I CTNAG 3 cut(s) 218, 227, 355
HpySE526I ACGT 2 cut(s) 390, 838
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 6 cut(s) 412, 464, 487, 668, 952, 1055
Kzo9I GATC 1 cut(s) 814
LmnI GCTCC 3 cut(s) 134, 364, 438
Lsp1109I GCAGC 5 cut(s) 73, 184, 203, 206, 1000
MaeI CTAG 4 cut(s) 59, 290, 329, 648
MaeII ACGT 2 cut(s) 390, 838
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 816
MboI GATC 1 cut(s) 814
MboII GAAGA 5 cut(s) 97, 305, 353, 566, 596
MfeI CAATTG 1 cut(s) 630
MhlI GDGCHC 3 cut(s) 99, 139, 483
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 6 cut(s) 289, 514, 580, 605, 608, 841
MseI TTAA 9 cut(s) 80, 396, 516, 563, 672, 753, 923, 987, 1083
MslI CAYNNNNRTG 5 cut(s) 71, 663, 950, 953, 1054
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 132, 435
MunI CAATTG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 2 cut(s) 83, 197
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 814
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 6 cut(s) 412, 464, 487, 668, 952, 1055
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 487
OliI CACNNNNGTG 1 cut(s) 1054
PagI TCATGA 1 cut(s) 948
PaqCI CACCTGC 1 cut(s) 713
PceI AGGCCT 1 cut(s) 299
PciI ACATGT 1 cut(s) 483
PkrI GCNGC 5 cut(s) 88, 193, 196, 199, 1015
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 128
PscI ACATGT 1 cut(s) 483
PshBI ATTAAT 1 cut(s) 987
Psp124BI GAGCTC 2 cut(s) 99, 139
Psp1406I AACGTT 1 cut(s) 838
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PstI CTGCAG 1 cut(s) 1018
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 2 cut(s) 538, 572
RsaNI GTAC 2 cut(s) 537, 571
RseI CAYNNNNRTG 5 cut(s) 71, 663, 950, 953, 1054
SacI GAGCTC 2 cut(s) 99, 139
SaqAI TTAA 9 cut(s) 80, 396, 516, 563, 672, 753, 923, 987, 1083
SatI GCNGC 5 cut(s) 87, 192, 195, 198, 1014
Sau3AI GATC 1 cut(s) 814
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 2 cut(s) 132, 435
SduI GDGCHC 3 cut(s) 99, 139, 483
SfcI CTRYAG 2 cut(s) 525, 1014
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 5 cut(s) 71, 663, 950, 953, 1054
SmlI CTYRAG 3 cut(s) 268, 428, 699
SmoI CTYRAG 3 cut(s) 268, 428, 699
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 1 cut(s) 471
SspI AATATT 1 cut(s) 831
SspMI CTAG 4 cut(s) 59, 290, 329, 648
SstI GAGCTC 2 cut(s) 99, 139
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 130, 433
TaaI ACNGT 2 cut(s) 424, 774
TaiI ACGT 2 cut(s) 393, 841
TaqI TCGA 4 cut(s) 93, 149, 489, 1007
TatI WGTACW 1 cut(s) 570
Tru1I TTAA 9 cut(s) 80, 396, 516, 563, 672, 753, 923, 987, 1083
Tru9I TTAA 9 cut(s) 80, 396, 516, 563, 672, 753, 923, 987, 1083
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 5 cut(s) 86, 191, 194, 197, 1013
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 4 cut(s) 224, 354, 653, 788
TspRI CASTG 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 128
VspI ATTAAT 1 cut(s) 987
XapI RAATTY 4 cut(s) 46, 202, 508, 884
XceI RCATGY 1 cut(s) 487
XspI CTAG 4 cut(s) 59, 290, 329, 648
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.