Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012155

Physical Location & Seq

Genomic Coordinates Forward (+)

23701392 .. 23704122

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAGCATCAGTGAGTCATATCCACCGGCTTTCCGGCGTGTAACCAACGACGAAAATCCTCCAGCAACACCGGTTATTGTCCAGGGCAAGGATATCAATATCCCGGTTATCGATTTGGAACGTTTGGACAAGGAGATACTGAGAGAGGCATGCAAGGAGTGGGGAATATTCCGTCTAGAGAATCACGGAGTACCGTTGGCGTTAACGTCACGGCTTCAAGAAATCTCGGAGTCATTACTGAGTCTTCCGTTTGAGAAAAAACGGGAATTGTTCGCTGCCGTTAAATCTCCGTTATCGTATTTTTGGGGAACACCAGCTCTAAATCGTTCAGGAGATGCACTAAAGAGAGGAGCTCAAGCTTCGAACTTAACCATGCTCGAAGGTTTCAACGTTCCTCTCTCGTCTCTCTCGTCGCTCTCGAAGCTTCCAACTTCTACTTGTTGTGATGATGATGCTCAAGAAGAGCCTAAACTTGAGTCTTTCAGAGTGTTGATGGAGGAATATGGAAAGCACATAACTAGAATTGCTGTGTCATTGTTCGAAGCTATAGCACAAACACTGAACCTAGAACTATCCGGTAACCGGAGATCAGAATACTTATCGGAATCGACAGGGCTAATAAGGGTTTACCGGTATCCACAAAGCTCCGAGGAAGCAGCCAGAGAAGCTCTAGGAATGGAAGTTCACACAGACAGTTCGGTTATCTCAATATTAAGAGAAGATGAAAGTGGTGGGCTTGAGATCATGAAAGGTGAAGAATGGTTCTGTGTAAAGCCTGTTGCTAATACTCTTATCGTCAATCTTGGAGATATGATGCAGGCCATAAGCGATGATGAGTACAAGAGTGTGACACATAGAGTGAAGAAGAGGAATAGGAAGACAGAGAGACACTCAGTGTGTTATTTTGTGTTTCCAAAGAGAGATTGCGTGATAAAGTCATCAAACTATAAGCTATTCACTTACTCAGATTTTGAAGCTCAAGTTCAAGCTGATGTTCAGTCTCTTGGAACCAAGATTGGCCTTCCTAGATTCAACCCAAATTCTCCATTGTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

352

Amino Acids

39.67

Weight (kDa)

5.61

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	34 - 112	7.4e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	207 - 274	2.8e-12	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58660 AT5G58660
fragaria_vesca	FvH4_3g38920
malus_domestica	MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica	Prupe.6G055300_v2.0.a1
pyrus_communis	pycom03g05320 pycom11g05970
rosa_chinensis	RchiOBHm_Chr5g0070171
rosa_laevigata	RLG00000036117
rosa_multiflora	Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii	Rroxscaffold_1G00010950
rosa_rugosa	Rorug05G0403600
rosa_samantha	Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana	Rw5G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	2 cut(s)	121, 390
AcsI	RAATTY	1 cut(s)	1039
AdeI	CACNNNGTG	1 cut(s)	895
AfaI	GTAC	2 cut(s)	192, 839
AfiI	CCNNNNNNNGG	2 cut(s)	88, 582
AgeI	ACCGGT	2 cut(s)	70, 630
AgsI	TTSAA	5 cut(s)	218, 388, 974, 986, 1033
AjnI	CCWGG	1 cut(s)	81
AloI	GAACNNNNNNTCC	2 cut(s)	666, 698
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	3 cut(s)	408, 880, 1005
AoxI	GGCC	2 cut(s)	819, 1018
ApeKI	GCWGC	2 cut(s)	275, 656
ApoI	RAATTY	1 cut(s)	1039
AsiGI	ACCGGT	2 cut(s)	70, 630
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	764
AsuII	TTCGAA	2 cut(s)	362, 540
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	2 cut(s)	236, 884
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	262, 668
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	2 cut(s)	227, 263
BciT130I	CCWGG	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	645
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	3 cut(s)	408, 880, 1005
BfaI	CTAG	5 cut(s)	176, 519, 566, 671, 1026
BfmI	CTRYAG	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	2 cut(s)	276, 657
BlsI	GCNGC	2 cut(s)	277, 658
Bme1390I	CCNGG	2 cut(s)	83, 104
BmiI	GGNNCC	1 cut(s)	1009
BmrFI	CCNGG	2 cut(s)	83, 104
BmsI	GCATC	4 cut(s)	15, 325, 442, 804
BpiI	GAAGAC	2 cut(s)	236, 884
BplI	GAGNNNNNCTC	4 cut(s)	337, 369, 875, 907
BpmI	CTGGAG	1 cut(s)	45
Bpu14I	TTCGAA	2 cut(s)	362, 540
BpuEI	CTTGAG	5 cut(s)	339, 441, 494, 758, 963
BpuMI	CCSGG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	82, 648
BsaWI	WCCGGW	4 cut(s)	70, 575, 582, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 582
Bse118I	RCCGGY	3 cut(s)	25, 70, 630
BseBI	CCWGG	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	82, 648
BseLI	CCNNNNNNNGG	2 cut(s)	88, 582
BseMII	CTCAG	4 cut(s)	131, 230, 906, 978
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	262, 668
BshFI	GGCC	2 cut(s)	821, 1020
BshTI	ACCGGT	2 cut(s)	70, 630
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	7 cut(s)	26, 34, 71, 104, 576, 583, 631
BslI	CCNNNNNNNGG	2 cut(s)	88, 582
BsmAI	GTCTC	3 cut(s)	408, 880, 1005
BsmBI	CGTCTC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	821, 1020
Bsp119I	TTCGAA	2 cut(s)	362, 540
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	587, 741
BspANI	GGCC	2 cut(s)	821, 1020
BspCNI	CTCAG	4 cut(s)	132, 231, 905, 977
BspDI	ATCGAT	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	1 cut(s)	1009
BspQI	GCTCTTC	1 cut(s)	456
BspT104I	TTCGAA	2 cut(s)	362, 540
BsrFI	RCCGGY	3 cut(s)	25, 70, 630
BssAI	RCCGGY	3 cut(s)	25, 70, 630
BssECI	CCNNGG	2 cut(s)	82, 648
BssMI	GATC	2 cut(s)	587, 741
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	195, 695
Bst6I	CTCTTC	2 cut(s)	456, 860
BstBI	TTCGAA	2 cut(s)	362, 540
BstC8I	GCNNGC	2 cut(s)	151, 819
BstDEI	CTNAG	4 cut(s)	140, 239, 892, 964
BstEII	GGTNACC	1 cut(s)	578
BstKTI	GATC	2 cut(s)	590, 744
BstMAI	GTCTC	3 cut(s)	408, 880, 1005
BstMBI	GATC	2 cut(s)	587, 741
BstMWI	GCNNNNNNNGC	2 cut(s)	421, 665
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	153
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	81, 102
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	262, 668
BstV2I	GAAGAC	2 cut(s)	236, 884
Bsu15I	ATCGAT	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	821, 1020
BsuTUI	ATCGAT	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	843
BtsIMutI	CAGTG	3 cut(s)	16, 557, 900
Cac8I	GCNNGC	2 cut(s)	151, 819
CciI	TCATGA	1 cut(s)	744
Cfr10I	RCCGGY	3 cut(s)	25, 70, 630
ClaI	ATCGAT	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	191, 838
CspAI	ACCGGT	2 cut(s)	70, 630
CviAII	CATG	3 cut(s)	150, 373, 745
CviQI	GTAC	2 cut(s)	191, 838
DdeI	CTNAG	4 cut(s)	140, 239, 892, 964
DpnI	GATC	2 cut(s)	589, 743
DpnII	GATC	2 cut(s)	587, 741
DraIII	CACNNNGTG	1 cut(s)	895
Eam1104I	CTCTTC	2 cut(s)	456, 860
EarI	CTCTTC	2 cut(s)	456, 860
Ecl136II	GAGCTC	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	3 cut(s)	153, 376, 748
FatI	CATG	3 cut(s)	149, 372, 744
Fnu4HI	GCNGC	2 cut(s)	276, 657
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	2 cut(s)	276, 657
FspBI	CTAG	5 cut(s)	176, 519, 566, 671, 1026
GluI	GCNGC	2 cut(s)	276, 657
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	821, 1020
HapII	CCGG	7 cut(s)	26, 34, 71, 104, 576, 583, 631
Hin1II	CATG	3 cut(s)	153, 376, 748
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	2 cut(s)	357, 422
HinfI	GANTC	7 cut(s)	14, 181, 230, 241, 476, 605, 1029
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	7 cut(s)	26, 34, 71, 104, 576, 583, 631
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	3 cut(s)	204, 628, 685
Hpy188I	TCNGA	7 cut(s)	229, 485, 592, 604, 649, 967, 1058
Hpy188III	TCNNGA	6 cut(s)	176, 218, 330, 418, 458, 745
Hpy8I	GTNNAC	3 cut(s)	204, 628, 685
Hpy99I	CGWCG	2 cut(s)	53, 415
HpyAV	CCTTC	2 cut(s)	374, 1031
HpyCH4III	ACNGT	2 cut(s)	195, 695
HpyCH4IV	ACGT	3 cut(s)	121, 206, 390
HpyCH4V	TGCA	3 cut(s)	153, 338, 817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	421, 665
HpyF3I	CTNAG	4 cut(s)	140, 239, 892, 964
HpySE526I	ACGT	3 cut(s)	121, 206, 390
Hsp92II	CATG	3 cut(s)	153, 376, 748
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	587, 741
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	350, 650
Lsp1109I	GCAGC	2 cut(s)	262, 668
LweI	GCATC	4 cut(s)	15, 325, 442, 804
MaeI	CTAG	5 cut(s)	176, 519, 566, 671, 1026
MaeII	ACGT	3 cut(s)	121, 206, 390
MaeIII	GTNAC	4 cut(s)	40, 207, 578, 847
MalI	GATC	2 cut(s)	589, 743
MboI	GATC	2 cut(s)	587, 741
MboII	GAAGA	7 cut(s)	236, 473, 731, 767, 874, 877, 889
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	3 cut(s)	266, 522, 1039
MlyI	GAGTC	4 cut(s)	23, 239, 250, 485
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	7 cut(s)	69, 139, 341, 405, 490, 643, 861
MseI	TTAA	4 cut(s)	203, 282, 368, 713
MspI	CCGG	7 cut(s)	26, 34, 71, 104, 576, 583, 631
MspR9I	CCNGG	2 cut(s)	83, 104
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	421, 665
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	587, 741
NlaIII	CATG	3 cut(s)	153, 376, 748
NlaIV	GGNNCC	1 cut(s)	1009
NmuCI	GTSAC	2 cut(s)	207, 847
NspI	RCATGY	1 cut(s)	153
NspV	TTCGAA	2 cut(s)	362, 540
PaeI	GCATGC	1 cut(s)	153
PagI	TCATGA	1 cut(s)	744
PciSI	GCTCTTC	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	2 cut(s)	407, 416
PfeI	GAWTC	3 cut(s)	181, 605, 1029
PinAI	ACCGGT	2 cut(s)	70, 630
PkrI	GCNGC	2 cut(s)	277, 658
PleI	GAGTC	4 cut(s)	22, 238, 249, 484
PpsI	GAGTC	4 cut(s)	22, 238, 249, 484
Psp124BI	GAGCTC	1 cut(s)	355
Psp1406I	AACGTT	2 cut(s)	121, 390
Psp6I	CCWGG	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	1009
RsaI	GTAC	2 cut(s)	192, 839
RsaNI	GTAC	2 cut(s)	191, 838
SacI	GAGCTC	1 cut(s)	355
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	4 cut(s)	203, 282, 368, 713
SatI	GCNGC	2 cut(s)	276, 657
Sau3AI	GATC	2 cut(s)	587, 741
SchI	GAGTC	4 cut(s)	23, 239, 250, 485
ScrFI	CCNGG	2 cut(s)	83, 104
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	4 cut(s)	15, 325, 442, 804
SfcI	CTRYAG	1 cut(s)	546
SfuI	TTCGAA	2 cut(s)	362, 540
SmlI	CTYRAG	5 cut(s)	354, 456, 473, 737, 978
SmoI	CTYRAG	5 cut(s)	354, 456, 473, 737, 978
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	3 cut(s)	266, 522, 1039
SspI	AATATT	2 cut(s)	168, 711
SspMI	CTAG	5 cut(s)	176, 519, 566, 671, 1026
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	81, 102
TaaI	ACNGT	2 cut(s)	195, 695
TaiI	ACGT	3 cut(s)	124, 209, 393
TaqI	TCGA	6 cut(s)	111, 362, 378, 419, 540, 608
TasI	AATT	3 cut(s)	266, 522, 1039
TatI	WGTACW	1 cut(s)	837
TfiI	GAWTC	3 cut(s)	181, 605, 1029
Tru1I	TTAA	4 cut(s)	203, 282, 368, 713
Tru9I	TTAA	4 cut(s)	203, 282, 368, 713
TscAI	CASTG	3 cut(s)	16, 564, 900
TseFI	GTSAC	2 cut(s)	207, 847
TseI	GCWGC	2 cut(s)	275, 656
Tsp45I	GTSAC	2 cut(s)	207, 847
TspDTI	ATGAA	2 cut(s)	738, 761
TspGWI	ACGGA	4 cut(s)	161, 201, 237, 279
TspRI	CASTG	3 cut(s)	16, 564, 900
XapI	RAATTY	1 cut(s)	1039
XbaI	TCTAGA	1 cut(s)	175
XceI	RCATGY	1 cut(s)	153
XspI	CTAG	5 cut(s)	176, 519, 566, 671, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.