Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012155

Physical Location & Seq

Genomic Coordinates Reverse (-)

55497154 .. 55498687

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0403600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGATGGGATGGGTGCATTTGGAAGCCACGATCTTGGAGGTCACAGCATCATTAATGACTTTGAGTTACAAGACTTCATAGATGATGCAAACTTCGACCAGTTCATCGATCTTATTCGCGGGGAAAATGAGGATCCAGCGGCAGCTCATTTTCATTGCGACCATATCAGTGGCTCGGGCTTTGTCATTGATAACCAGTTTGGTCCAACTACTCCGGGTAGTGGTTTCTTTGGTTTAGATCATAGTACTACTGGCGTATCCAATCCAGCTCCTTTTCTTACTACATTACCACATTTCGATAGAGAAATAAATGATAGTGGGGAAGAAGATAATGACACAGACTCATGTGGAACAACGACAACAACCACCACAAATACCACAGCCACAACAACAAAGAAGCAAAAGGTTGATCGGTCTCGAACCTTGGTTTCGGAAAGGAAGAGGAGGGGAAGGATGAAAGAGAAACTCTATGCATTGCGGTCCTTGGTTCCTAACATCACTAAGATGGATAAGGCCTCCATTGTTGGAGATGCTGTACTGTATGTACAAGATCTGCAAAAACACGCTAAAAAGCTAGAAGCTGAGATTTCGTGCATTGAAGCATCCATAGAAGGATCAGGGGGAAAGCAGGCAGGATCAACGCAAAATCCAACCAAGAATAAAATAGTTGTTGACAATTATCATTTAACTCCCACGGGAATCATTCAGATAGATGTGTCCCAAGTAGAGGAGAATGGTTTTTATGTGAAAGTGGGATGCAACAAAGGAGTAGGCGTAGCCACAGCACTTTACAAGGCTATTGAATCCCTTACAAGCTTCAATGTTTTGAGTTCAAACTTGAACATGGTTAGTTCTGGGAGATTCGAAGTAACACTGGCTTTGAATGTAAAAGAAAGCGAGCAGGAGATCATCAACTTACCAAACTTGAAACTTTGGGTGGCCGGAGCTTTTCTGAACCAAGGTTTTGAATTAGCTACAGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

328

Amino Acids

35.59

Weight (kDa)

5.06

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	142 - 186	2.2e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58660 AT5G58660
fragaria_vesca	FvH4_3g38920
malus_domestica	MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica	Prupe.6G055300_v2.0.a1
pyrus_communis	pycom03g05320 pycom11g05970
rosa_chinensis	RchiOBHm_Chr5g0070171
rosa_laevigata	RLG00000036117
rosa_multiflora	Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii	Rroxscaffold_1G00010950
rosa_rugosa	Rorug05G0403600
rosa_samantha	Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana	Rw5G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	120, 140, 478
AclWI	GGATC	4 cut(s)	128, 141, 622, 643
AcoI	YGGCCR	1 cut(s)	939
AfaI	GTAC	3 cut(s)	247, 537, 546
AfiI	CCNNNNNNNGG	2 cut(s)	221, 727
AgsI	TTSAA	8 cut(s)	599, 803, 820, 834, 841, 883, 928, 968
AluBI	AGCT	7 cut(s)	146, 269, 574, 581, 816, 947, 974
AluI	AGCT	7 cut(s)	146, 269, 574, 581, 816, 947, 974
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	4 cut(s)	128, 141, 622, 643
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	513, 939
ApeKI	GCWGC	1 cut(s)	143
AseI	ATTAAT	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	203, 480
AsuC2I	CCSGG	1 cut(s)	216
AsuII	TTCGAA	1 cut(s)	864
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	203, 480
BaeI	ACNNNNGTAYC	2 cut(s)	240, 273
BamHI	GGATCC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	4, 499
BciVI	GTATCC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	975
BfuI	GTATCC	1 cut(s)	268
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	2 cut(s)	141, 144
BlsI	GCNGC	2 cut(s)	142, 145
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	2 cut(s)	203, 480
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	203, 480
BmiI	GGNNCC	2 cut(s)	135, 489
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	5 cut(s)	57, 76, 520, 611, 746
Bpu14I	TTCGAA	1 cut(s)	864
BpuMI	CCSGG	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	4 cut(s)	423, 483, 693, 958
BsaXI	ACNNNNNCTCC	4 cut(s)	519, 549, 759, 789
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 727
Bse1I	ACTGG	4 cut(s)	100, 196, 256, 879
Bse3DI	GCAATG	2 cut(s)	154, 473
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	4 cut(s)	423, 483, 693, 958
BseGI	GGATG	5 cut(s)	10, 15, 459, 602, 761
BseLI	CCNNNNNNNGG	2 cut(s)	221, 727
BseMI	GCAATG	2 cut(s)	154, 473
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	4 cut(s)	100, 196, 256, 879
BseRI	GAGGAG	2 cut(s)	457, 743
BseXI	GCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	515, 941
BshVI	ATCGAT	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	215, 942
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	2 cut(s)	221, 727
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	703
BsnI	GGCC	2 cut(s)	515, 941
Bso31I	GGTCTC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	864
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	9 cut(s)	31, 109, 133, 238, 409, 550, 614, 635, 906
BspACI	CCGC	3 cut(s)	120, 140, 478
BspANI	GGCC	2 cut(s)	515, 941
BspCNI	CTCAG	1 cut(s)	574
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	135, 489
BspPI	GGATC	4 cut(s)	128, 141, 622, 643
BspT104I	TTCGAA	1 cut(s)	864
BspTNI	GGTCTC	1 cut(s)	420
BsrDI	GCAATG	2 cut(s)	154, 473
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	4 cut(s)	100, 196, 256, 879
BssECI	CCNNGG	4 cut(s)	423, 483, 693, 958
BssMI	GATC	9 cut(s)	31, 109, 133, 238, 409, 550, 614, 635, 906
BssT1I	CCWWGG	3 cut(s)	423, 483, 958
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	544
BstBI	TTCGAA	1 cut(s)	864
BstC8I	GCNNGC	2 cut(s)	630, 899
BstDEI	CTNAG	2 cut(s)	501, 582
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	5 cut(s)	10, 15, 459, 602, 761
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	9 cut(s)	34, 112, 136, 241, 412, 553, 617, 638, 909
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	9 cut(s)	31, 109, 133, 238, 409, 550, 614, 635, 906
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	975
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	2 cut(s)	133, 550
BstXI	CCANNNNNNTGG	2 cut(s)	35, 170
BstYI	RGATCY	2 cut(s)	133, 550
Bsu15I	ATCGAT	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	515, 941
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	5 cut(s)	10, 15, 459, 602, 761
BtsIMutI	CAGTG	2 cut(s)	175, 872
Cac8I	GCNNGC	2 cut(s)	630, 899
Cfr13I	GGNCC	2 cut(s)	203, 480
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	246, 536, 545
CviAII	CATG	2 cut(s)	345, 844
CviQI	GTAC	3 cut(s)	246, 536, 545
DdeI	CTNAG	2 cut(s)	501, 582
DpnI	GATC	9 cut(s)	33, 111, 135, 240, 411, 552, 616, 637, 908
DpnII	GATC	9 cut(s)	31, 109, 133, 238, 409, 550, 614, 635, 906
EaeI	YGGCCR	1 cut(s)	939
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	3 cut(s)	423, 483, 958
Eco147I	AGGCCT	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	2 cut(s)	203, 480
Eco88I	CYCGRG	1 cut(s)	175
EcoT14I	CCWWGG	3 cut(s)	423, 483, 958
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	3 cut(s)	423, 483, 958
FaeI	CATG	2 cut(s)	348, 847
FaiI	YATR	9 cut(s)	80, 165, 243, 346, 471, 543, 608, 744, 845
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	2 cut(s)	344, 843
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	141, 144
FokI	GGATG	5 cut(s)	17, 22, 466, 589, 768
Fsp4HI	GCNGC	2 cut(s)	141, 144
FspBI	CTAG	1 cut(s)	575
GluI	GCNGC	2 cut(s)	141, 144
HaeIII	GGCC	2 cut(s)	515, 941
HapII	CCGG	2 cut(s)	215, 942
Hin1II	CATG	2 cut(s)	348, 847
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	814
HinfI	GANTC	4 cut(s)	341, 699, 803, 861
HpaII	CCGG	2 cut(s)	215, 942
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	3 cut(s)	433, 708, 954
Hpy188III	TCNNGA	1 cut(s)	417
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	2 cut(s)	444, 605
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	6 cut(s)	17, 89, 473, 556, 594, 759
HpyF3I	CTNAG	2 cut(s)	501, 582
Hsp92II	CATG	2 cut(s)	348, 847
Kzo9I	GATC	9 cut(s)	31, 109, 133, 238, 409, 550, 614, 635, 906
LmnI	GCTCC	2 cut(s)	274, 944
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	5 cut(s)	57, 76, 520, 611, 746
MaeI	CTAG	1 cut(s)	575
MaeIII	GTNAC	3 cut(s)	41, 66, 868
MalI	GATC	9 cut(s)	33, 111, 135, 240, 411, 552, 616, 637, 908
MboI	GATC	9 cut(s)	31, 109, 133, 238, 409, 550, 614, 635, 906
MboII	GAAGA	3 cut(s)	335, 338, 451
MflI	RGATCY	2 cut(s)	133, 550
MluCI	AATT	2 cut(s)	676, 968
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	3 cut(s)	230, 505, 674
MnlI	CCTC	6 cut(s)	32, 124, 435, 438, 526, 721
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	2 cut(s)	54, 686
MslI	CAYNNNNRTG	2 cut(s)	168, 503
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	2 cut(s)	215, 942
MspR9I	CCNGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	9 cut(s)	31, 109, 133, 238, 409, 550, 614, 635, 906
NlaIII	CATG	2 cut(s)	348, 847
NlaIV	GGNNCC	2 cut(s)	135, 489
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	475
NspV	TTCGAA	1 cut(s)	864
PceI	AGGCCT	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	699, 803, 861
PkrI	GCNGC	2 cut(s)	142, 145
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PshBI	ATTAAT	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	135, 489
PspPI	GGNCC	2 cut(s)	203, 480
PsuI	RGATCY	2 cut(s)	133, 550
RsaI	GTAC	3 cut(s)	247, 537, 546
RsaNI	GTAC	3 cut(s)	246, 536, 545
RseI	CAYNNNNRTG	2 cut(s)	168, 503
SaqAI	TTAA	2 cut(s)	54, 686
SatI	GCNGC	2 cut(s)	141, 144
Sau3AI	GATC	9 cut(s)	31, 109, 133, 238, 409, 550, 614, 635, 906
Sau96I	GGNCC	2 cut(s)	203, 480
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	216
SfaNI	GCATC	5 cut(s)	57, 76, 520, 611, 746
SfcI	CTRYAG	1 cut(s)	975
SfuI	TTCGAA	1 cut(s)	864
SinI	GGWCC	2 cut(s)	203, 480
SmiMI	CAYNNNNRTG	2 cut(s)	168, 503
Sse9I	AATT	2 cut(s)	676, 968
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	3 cut(s)	120, 140, 478
SspMI	CTAG	1 cut(s)	575
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	3 cut(s)	423, 483, 958
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	5 cut(s)	96, 108, 297, 418, 864
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	676, 968
TatI	WGTACW	3 cut(s)	245, 535, 544
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	3 cut(s)	699, 803, 861
Tru1I	TTAA	2 cut(s)	54, 686
Tru9I	TTAA	2 cut(s)	54, 686
TscAI	CASTG	2 cut(s)	175, 879
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	67, 94, 143, 470
TspRI	CASTG	2 cut(s)	175, 879
VpaK11BI	GGWCC	2 cut(s)	203, 480
VspI	ATTAAT	1 cut(s)	54
XspI	CTAG	1 cut(s)	575
ZrmI	AGTACT	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.