Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012155

Physical Location & Seq

Genomic Coordinates Reverse (-)

4146410 .. 4148127

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATAATTAATAAGCAGCGTCCTGCCCTACAAGAAGACGATGACCTCCATTGTTCTGAGAAAAAAATGGCTTCTGAATCCTACCCTCCACCGTTTCGTTCACTTCCAGATTCAACCCAGGCCGTTGATTTGGATGACCAAGTCAACCCGGTTCATGATTCGGAGGATCCGATTCCTTTGATGGATCTCCAGAGCCTGAAACTTGGGGAGGCATGCGAGTTTTGGGGAATTTTTCGTTTGGTCAATCATGGAGTTCCTCCAACCCTTTTGACCCAACTTCGGGAGCATGCCAAAATGGTTTTTTCCCTGCCGTTTGAGTCCAAACAGAGCCTTATCACCAGCCCTCTGTCCTACTTCTGGGGTACCCCTGCCCTTACTCCATCTGGGGAGGCCTTATCAACAAAGGGTAGTAGTACCCTCCAGAATATCAACTGGGTTGAAGGACTCAACGTCCCTCTAGCTCAACTCAGTCAATTTCAAATTGACAATCGCATAATTGCTTCTTTCAGCCTTGTGCTAGAAGAATATGGGAAGCACCTAGCTAGGCTAGCGACAACTATATTTGACGCTATGGTAATAAACCTTGGATTGGATCCAATAGAATCCAAATCCCATTTATCAAATTCTACTGGCATTGTACGTGTCTATCGCTACCCACCACATTGCTCCAACTCCAGCTCTGCATCTGCAAGGGGCATGGACGTGCACACTGACAGCTCTGTGCTCTCGATACTAAATCAAGATGAAGTCGGTGGACTCGAAGTTCTCAAAGACAATGAGTGGTTCAGTGTTAACCCAATTCCCAACACACTGATTGTCAACCTCGGAGACATGATGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

281

Amino Acids

31.02

Weight (kDa)

4.89

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	66 - 150	8.4e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	213 - 279	8.7e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58660 AT5G58660
fragaria_vesca	FvH4_3g38920
malus_domestica	MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica	Prupe.6G055300_v2.0.a1
pyrus_communis	pycom03g05320 pycom11g05970
rosa_chinensis	RchiOBHm_Chr5g0070171
rosa_laevigata	RLG00000036117
rosa_multiflora	Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii	Rroxscaffold_1G00010950
rosa_rugosa	Rorug05G0403600
rosa_samantha	Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana	Rw5G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	362
AclWI	GGATC	5 cut(s)	161, 174, 192, 587, 600
AcsI	RAATTY	2 cut(s)	228, 622
AfaI	GTAC	3 cut(s)	364, 415, 639
AfiI	CCNNNNNNNGG	4 cut(s)	279, 280, 357, 589
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	3 cut(s)	114, 440, 479
AhdI	GACNNNNNGTC	1 cut(s)	449
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	1 cut(s)	117
AloI	GAACNNNNNNTCC	2 cut(s)	747, 779
AluBI	AGCT	4 cut(s)	461, 542, 678, 717
AluI	AGCT	4 cut(s)	461, 542, 678, 717
Alw21I	GWGCWC	2 cut(s)	708, 726
Alw26I	GTCTC	1 cut(s)	822
Alw44I	GTGCAC	1 cut(s)	704
AlwI	GGATC	5 cut(s)	161, 174, 192, 587, 600
AlwNI	CAGNNNCTG	1 cut(s)	196
AoxI	GGCC	2 cut(s)	120, 390
ApaLI	GTGCAC	1 cut(s)	704
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	2 cut(s)	228, 622
AseI	ATTAAT	1 cut(s)	9
Asp718I	GGTACC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	328
AsuNHI	GCTAGC	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	708
BamHI	GGATCC	2 cut(s)	166, 592
BanI	GGYRCC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	708, 726
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	175, 388
BceAI	ACGGC	2 cut(s)	107, 295
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	5 cut(s)	458, 518, 539, 543, 548
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	119, 149
BmeRI	GACNNNNNGTC	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	703
BmiI	GGNNCC	3 cut(s)	168, 364, 594
BmrFI	CCNGG	2 cut(s)	119, 149
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	2 cut(s)	692, 825
BmtI	GCTAGC	1 cut(s)	551
BmuI	ACTGGG	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	3 cut(s)	173, 404, 658
BpuMI	CCSGG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	117, 583, 823
Bsc4I	CCNNNNNNNGG	4 cut(s)	279, 280, 357, 589
Bse1I	ACTGG	2 cut(s)	437, 634
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	117, 583, 823
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	4 cut(s)	279, 280, 357, 589
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	2 cut(s)	48, 481
BseNI	ACTGG	2 cut(s)	437, 634
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	2 cut(s)	122, 392
BshNI	GGYRCC	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	708, 726
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	4 cut(s)	279, 280, 357, 589
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	122, 392
Bsp1286I	GDGCHC	2 cut(s)	708, 726
Bsp143I	GATC	3 cut(s)	166, 184, 592
BspANI	GGCC	2 cut(s)	122, 392
BspCNI	CTCAG	2 cut(s)	49, 480
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	168, 364, 594
BspOI	GCTAGC	1 cut(s)	551
BspPI	GGATC	5 cut(s)	161, 174, 192, 587, 600
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	661
BsrI	ACTGG	2 cut(s)	437, 634
BssECI	CCNNGG	3 cut(s)	117, 583, 823
BssMI	GATC	3 cut(s)	166, 184, 592
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	3 cut(s)	214, 288, 549
BstDEI	CTNAG	2 cut(s)	57, 467
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	169, 187, 595
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	3 cut(s)	166, 184, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	2 cut(s)	216, 290
BstSCI	CCNGG	2 cut(s)	117, 147
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	3 cut(s)	166, 184, 592
BstYI	RGATCY	3 cut(s)	166, 184, 592
BsuRI	GGCC	2 cut(s)	122, 392
BtrI	CACGTC	1 cut(s)	703
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	708, 793, 809
Cac8I	GCNNGC	3 cut(s)	214, 288, 549
CaiI	CAGNNNCTG	1 cut(s)	196
CciI	TCATGA	1 cut(s)	154
CseI	GACGC	2 cut(s)	8, 575
Csp6I	GTAC	3 cut(s)	363, 414, 638
CviAII	CATG	6 cut(s)	155, 213, 248, 287, 697, 832
CviQI	GTAC	3 cut(s)	363, 414, 638
DdeI	CTNAG	2 cut(s)	57, 467
DpnI	GATC	3 cut(s)	168, 186, 594
DpnII	GATC	3 cut(s)	166, 184, 592
DriI	GACNNNNNGTC	1 cut(s)	449
Eam1105I	GACNNNNNGTC	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	583
Eco147I	AGGCCT	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	6 cut(s)	158, 216, 251, 290, 700, 835
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	6 cut(s)	154, 212, 247, 286, 696, 831
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	5 cut(s)	458, 518, 539, 543, 548
GluI	GCNGC	1 cut(s)	17
GsuI	CTGGAG	3 cut(s)	173, 404, 658
HaeIII	GGCC	2 cut(s)	122, 392
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	2 cut(s)	8, 575
Hin1II	CATG	6 cut(s)	158, 216, 251, 290, 700, 835
HincII	GTYRAC	3 cut(s)	145, 793, 820
HindII	GTYRAC	3 cut(s)	145, 793, 820
HinfI	GANTC	8 cut(s)	77, 110, 158, 172, 317, 444, 602, 756
HpaI	GTTAAC	1 cut(s)	793
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	6 cut(s)	101, 145, 706, 755, 793, 820
Hpy188I	TCNGA	5 cut(s)	58, 76, 163, 171, 827
Hpy188III	TCNNGA	7 cut(s)	107, 155, 190, 281, 421, 727, 740
Hpy8I	GTNNAC	6 cut(s)	101, 145, 706, 755, 793, 820
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	3 cut(s)	450, 640, 702
HpyCH4V	TGCA	3 cut(s)	683, 689, 706
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	2 cut(s)	57, 467
HpySE526I	ACGT	3 cut(s)	450, 640, 702
Hsp92II	CATG	6 cut(s)	158, 216, 251, 290, 700, 835
KpnI	GGTACC	1 cut(s)	366
KspAI	GTTAAC	1 cut(s)	793
Kzo9I	GATC	3 cut(s)	166, 184, 592
LmnI	GCTCC	2 cut(s)	283, 671
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	692, 825
MaeI	CTAG	5 cut(s)	458, 518, 539, 543, 548
MaeII	ACGT	3 cut(s)	450, 640, 702
MalI	GATC	3 cut(s)	168, 186, 594
MboI	GATC	3 cut(s)	166, 184, 592
MboII	GAAGA	2 cut(s)	47, 533
MflI	RGATCY	3 cut(s)	166, 184, 592
MhlI	GDGCHC	2 cut(s)	708, 726
MluCI	AATT	7 cut(s)	6, 228, 473, 480, 495, 622, 798
MlyI	GAGTC	3 cut(s)	326, 438, 750
MmeI	TCCRAC	2 cut(s)	284, 693
MseI	TTAA	2 cut(s)	9, 792
MslI	CAYNNNNRTG	1 cut(s)	701
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	119, 149
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	548
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	166, 184, 592
NheI	GCTAGC	1 cut(s)	547
NlaIII	CATG	6 cut(s)	158, 216, 251, 290, 700, 835
NlaIV	GGNNCC	3 cut(s)	168, 364, 594
NspI	RCATGY	2 cut(s)	216, 290
PaeI	GCATGC	2 cut(s)	216, 290
PagI	TCATGA	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	2 cut(s)	167, 756
PfeI	GAWTC	5 cut(s)	77, 110, 158, 172, 602
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	3 cut(s)	325, 438, 750
PpsI	GAGTC	3 cut(s)	325, 438, 750
Ppu21I	YACGTR	1 cut(s)	641
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	3 cut(s)	168, 364, 594
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	3 cut(s)	166, 184, 592
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	3 cut(s)	364, 415, 639
RsaNI	GTAC	3 cut(s)	363, 414, 638
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	2 cut(s)	9, 792
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	3 cut(s)	166, 184, 592
SchI	GAGTC	3 cut(s)	326, 438, 750
ScrFI	CCNGG	2 cut(s)	119, 149
SduI	GDGCHC	2 cut(s)	708, 726
SfaNI	GCATC	2 cut(s)	692, 825
SmiMI	CAYNNNNRTG	1 cut(s)	701
SphI	GCATGC	2 cut(s)	216, 290
Sse9I	AATT	7 cut(s)	6, 228, 473, 480, 495, 622, 798
SseBI	AGGCCT	1 cut(s)	392
SspMI	CTAG	5 cut(s)	458, 518, 539, 543, 548
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	117, 147
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	3 cut(s)	453, 643, 705
TaqI	TCGA	2 cut(s)	728, 759
TasI	AATT	7 cut(s)	6, 228, 473, 480, 495, 622, 798
TfiI	GAWTC	5 cut(s)	77, 110, 158, 172, 602
Tru1I	TTAA	2 cut(s)	9, 792
Tru9I	TTAA	2 cut(s)	9, 792
TscAI	CASTG	3 cut(s)	715, 793, 816
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	143, 759
TspRI	CASTG	3 cut(s)	715, 793, 816
Tth111I	GACNNNGTC	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	704
VspI	ATTAAT	1 cut(s)	9
XapI	RAATTY	2 cut(s)	228, 622
XceI	RCATGY	2 cut(s)	216, 290
XspI	CTAG	5 cut(s)	458, 518, 539, 543, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.