Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012155

Physical Location & Seq

Genomic Coordinates Reverse (-)

4593588 .. 4595347

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTTCTGAATCCTACCCTCCTCTGTTCCGTTCACACATAGATTCAACCCAGGCCGCTGATTCGGATGACCAAGTCAACCCAGTTCATGATTTGGAGGATCCGATTCCTCTGGTGGATCTCCAGAGCCTGAAACTTGGGGAGGCATGTGAGTTTTGGGGCATTTTTCGTTTGGTCAACCATGGAGTTCCTCCAACCCTTTTGACCCAACTTGAAGAGCATGCCAAAGCGGTTTTTTCCCTGCCGTTTGAATCCAAACAGAGCCTTATCACCAGCCCTCTGTCCTACTTCTGGGGTACCCCTGCCCTTACTCCATCTGGGGCAGCCTTATCAACAAAGGGTACTAGTACCCTCCAGAATATCAATTGGGTTGAAGGACTGAATGTCCCTCTAGCTCAACTCAGTCAATTCCAAACTGACAATCCCACAGTTGCTTCTTTCAGGTACATTTCTTTTCATTCATTGGGCTGTAAAGGTATAATTTCTCTGTGTCTCAAAAGCCTTGTGCTGGAAGAATATGGGAAACACCTAGCCAGGCTAGCCACAACTATATTTGAAGCTATGGTGAAAAGCCTTGGATTGGATCCAATAGAATCCAAATCCCACTTATCCAATCCCACTGGCCTTGTACGTCTATATCGCTACCCACCACATTGCTCCAACTCTGCATCTGCATCTGCATGGGGCATGGACGTCCACACTGACAGCTCTGTGCTCTCGATACTAAACCAAGATGATGTCGGTGGACTCGAAGTTCTCAAAGACACCGAGTGGTTCAATGTAAACCCAGTTCCCAGCACACTAATTGTCAACCTCGGGGACATGATGCAGGCGATTAGCGACGACAAATACAAGAGTGTGAAGCACAGAGTGAAGGTGAACAGAAGCAAAGAGAGAATTTCAATCTGCTACTTTGTGTTTCCTGGAGAAGGCAGTGTGATTCGGAGCTCAAACTACAAGCCCTTTACATATGGTGACTTTCAGAAGGAAGTGCAGAAAGATTTAAAGAGTGTTGGGTATAAGGTTGGGCTCGAGAGATTCAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

350

Amino Acids

38.64

Weight (kDa)

6.07

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	37 - 128	8e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	209 - 308	6.9e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58660 AT5G58660
fragaria_vesca	FvH4_3g38920
malus_domestica	MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica	Prupe.6G055300_v2.0.a1
pyrus_communis	pycom03g05320 pycom11g05970
rosa_chinensis	RchiOBHm_Chr5g0070171
rosa_laevigata	RLG00000036117
rosa_multiflora	Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii	Rroxscaffold_1G00010950
rosa_rugosa	Rorug05G0403600
rosa_samantha	Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana	Rw5G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	696
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	2 cut(s)	57, 230
AclWI	GGATC	5 cut(s)	95, 108, 126, 578, 591
AcsI	RAATTY	1 cut(s)	897
AcyI	GRCGYC	1 cut(s)	693
AdeI	CACNNNGTG	2 cut(s)	771, 871
AfaI	GTAC	5 cut(s)	298, 343, 349, 446, 630
AfiI	CCNNNNNNNGG	4 cut(s)	291, 508, 580, 929
AgsI	TTSAA	7 cut(s)	48, 215, 251, 374, 557, 778, 903
AhdI	GACNNNNNGTC	1 cut(s)	383
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	3 cut(s)	51, 533, 922
AloI	GAACNNNNNNTCC	2 cut(s)	738, 770
AluBI	AGCT	5 cut(s)	395, 560, 708, 948, 1046
AluI	AGCT	5 cut(s)	395, 560, 708, 948, 1046
Alw21I	GWGCWC	2 cut(s)	717, 950
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	5 cut(s)	95, 108, 126, 578, 591
AlwNI	CAGNNNCTG	1 cut(s)	130
Ama87I	CYCGRG	2 cut(s)	815, 1031
AoxI	GGCC	2 cut(s)	54, 622
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	897
Asp718I	GGTACC	1 cut(s)	296
AsuHPI	GGTGA	4 cut(s)	262, 577, 889, 986
AsuNHI	GCTAGC	1 cut(s)	538
AvaI	CYCGRG	2 cut(s)	815, 1031
BamHI	GGATCC	2 cut(s)	100, 583
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	950, 1032
Bbv12I	GWGCWC	2 cut(s)	717, 950
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	3 cut(s)	53, 535, 924
BcoDI	GTCTC	1 cut(s)	497
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	4 cut(s)	345, 392, 530, 539
BisI	GCNGC	2 cut(s)	57, 324
BlsI	GCNGC	2 cut(s)	58, 325
Bme1390I	CCNGG	3 cut(s)	53, 535, 924
BmeRI	GACNNNNNGTC	1 cut(s)	383
BmeT110I	CYCGRG	2 cut(s)	815, 1031
BmiI	GGNNCC	3 cut(s)	102, 298, 585
BmrFI	CCNGG	3 cut(s)	53, 535, 924
BmrI	ACTGGG	2 cut(s)	77, 782
BmsI	GCATC	3 cut(s)	677, 683, 816
BmtI	GCTAGC	1 cut(s)	542
BmuI	ACTGGG	2 cut(s)	77, 782
BpmI	CTGGAG	3 cut(s)	107, 338, 945
BsaHI	GRCGYC	1 cut(s)	693
BsaJI	CCNNGG	4 cut(s)	51, 181, 574, 814
Bsc4I	CCNNNNNNNGG	4 cut(s)	291, 508, 580, 929
Bse1I	ACTGG	3 cut(s)	83, 625, 788
Bse3DI	GCAATG	1 cut(s)	652
BseBI	CCWGG	3 cut(s)	53, 535, 924
BseDI	CCNNGG	4 cut(s)	51, 181, 574, 814
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	4 cut(s)	291, 508, 580, 929
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	1 cut(s)	415
BseNI	ACTGG	3 cut(s)	83, 625, 788
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	794
BsgI	GTGCAG	1 cut(s)	1013
BshFI	GGCC	2 cut(s)	56, 624
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	717, 950
BsiHKCI	CYCGRG	2 cut(s)	815, 1031
BslFI	GGGAC	2 cut(s)	371, 833
BslI	CCNNNNNNNGG	4 cut(s)	291, 508, 580, 929
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	371, 833
BsnI	GGCC	2 cut(s)	56, 624
BsoBI	CYCGRG	2 cut(s)	815, 1031
Bsp1286I	GDGCHC	3 cut(s)	717, 950, 1032
Bsp143I	GATC	3 cut(s)	100, 118, 583
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	2 cut(s)	57, 230
BspANI	GGCC	2 cut(s)	56, 624
BspCNI	CTCAG	1 cut(s)	414
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	102, 298, 585
BspOI	GCTAGC	1 cut(s)	542
BspPI	GGATC	5 cut(s)	95, 108, 126, 578, 591
BspQI	GCTCTTC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	652
BsrI	ACTGG	3 cut(s)	83, 625, 788
BssECI	CCNNGG	4 cut(s)	51, 181, 574, 814
BssMI	GATC	3 cut(s)	100, 118, 583
BssNI	GRCGYC	1 cut(s)	693
BssT1I	CCWWGG	2 cut(s)	181, 574
Bst2UI	CCWGG	3 cut(s)	53, 535, 924
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	693
BstC8I	GCNNGC	3 cut(s)	222, 540, 831
BstDEI	CTNAG	2 cut(s)	401, 1047
BstDSI	CCRYGG	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	927
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	3 cut(s)	103, 121, 586
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	3 cut(s)	100, 118, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	3 cut(s)	53, 535, 924
BstNSI	RCATGY	2 cut(s)	150, 224
BstSCI	CCNGG	3 cut(s)	51, 533, 922
BstV1I	GCAGC	1 cut(s)	335
BstX2I	RGATCY	3 cut(s)	100, 118, 583
BstYI	RGATCY	3 cut(s)	100, 118, 583
BsuRI	GGCC	2 cut(s)	56, 624
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	3 cut(s)	618, 699, 940
Cac8I	GCNNGC	3 cut(s)	222, 540, 831
CaiI	CAGNNNCTG	1 cut(s)	130
CciI	TCATGA	1 cut(s)	88
Csp6I	GTAC	5 cut(s)	297, 342, 348, 445, 629
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	7 cut(s)	89, 147, 182, 221, 681, 688, 823
CviQI	GTAC	5 cut(s)	297, 342, 348, 445, 629
DdeI	CTNAG	2 cut(s)	401, 1047
DpnI	GATC	3 cut(s)	102, 120, 585
DpnII	GATC	3 cut(s)	100, 118, 583
DraI	TTTAAA	1 cut(s)	1005
DraIII	CACNNNGTG	2 cut(s)	771, 871
DriI	GACNNNNNGTC	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	210
Eam1105I	GACNNNNNGTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	948
Eco130I	CCWWGG	2 cut(s)	181, 574
Eco24I	GRGCYC	2 cut(s)	950, 1032
Eco53kI	GAGCTC	1 cut(s)	948
Eco88I	CYCGRG	2 cut(s)	815, 1031
EcoICRI	GAGCTC	1 cut(s)	948
EcoNI	CCTNNNNNAGG	1 cut(s)	927
EcoRII	CCWGG	3 cut(s)	51, 533, 922
EcoT14I	CCWWGG	2 cut(s)	181, 574
EcoT38I	GRGCYC	2 cut(s)	950, 1032
ErhI	CCWWGG	2 cut(s)	181, 574
FaeI	CATG	7 cut(s)	92, 150, 185, 224, 684, 691, 826
FaqI	GGGAC	2 cut(s)	371, 833
FatI	CATG	7 cut(s)	88, 146, 181, 220, 680, 687, 822
FauNDI	CATATG	1 cut(s)	970
Fnu4HI	GCNGC	2 cut(s)	57, 324
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	2 cut(s)	950, 1032
Fsp4HI	GCNGC	2 cut(s)	57, 324
FspBI	CTAG	4 cut(s)	345, 392, 530, 539
GluI	GCNGC	2 cut(s)	57, 324
GsaI	CCCAGC	1 cut(s)	798
GsuI	CTGGAG	3 cut(s)	107, 338, 945
HaeIII	GGCC	2 cut(s)	56, 624
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	7 cut(s)	92, 150, 185, 224, 684, 691, 826
HincII	GTYRAC	3 cut(s)	79, 178, 811
HindII	GTYRAC	3 cut(s)	79, 178, 811
HinfI	GANTC	9 cut(s)	11, 44, 62, 106, 251, 593, 747, 940, 1038
HphI	GGTGA	4 cut(s)	262, 577, 889, 986
Hpy166II	GTNNAC	8 cut(s)	35, 79, 178, 697, 746, 784, 811, 880
Hpy188I	TCNGA	6 cut(s)	10, 67, 105, 945, 984, 1043
Hpy188III	TCNNGA	5 cut(s)	89, 124, 355, 718, 1033
Hpy8I	GTNNAC	8 cut(s)	35, 79, 178, 697, 746, 784, 811, 880
Hpy99I	CGWCG	1 cut(s)	845
HpyAV	CCTTC	4 cut(s)	368, 868, 923, 979
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	2 cut(s)	631, 693
HpyCH4V	TGCA	5 cut(s)	668, 674, 680, 829, 994
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	401, 1047
HpySE526I	ACGT	2 cut(s)	631, 693
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	7 cut(s)	92, 150, 185, 224, 684, 691, 826
KpnI	GGTACC	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	100, 118, 583
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	2 cut(s)	662, 945
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	3 cut(s)	677, 683, 816
MaeI	CTAG	4 cut(s)	345, 392, 530, 539
MaeII	ACGT	2 cut(s)	631, 693
MaeIII	GTNAC	1 cut(s)	974
MalI	GATC	3 cut(s)	102, 120, 585
MboI	GATC	3 cut(s)	100, 118, 583
MboII	GAAGA	2 cut(s)	227, 524
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	3 cut(s)	100, 118, 583
MhlI	GDGCHC	3 cut(s)	717, 950, 1032
MluCI	AATT	5 cut(s)	364, 407, 480, 804, 897
MlyI	GAGTC	1 cut(s)	741
MmeI	TCCRAC	2 cut(s)	218, 684
MseI	TTAA	1 cut(s)	1004
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	53, 535, 924
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	53, 535, 924
MwoI	GCNNNNNNNGC	1 cut(s)	539
NcoI	CCATGG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	3 cut(s)	100, 118, 583
NheI	GCTAGC	1 cut(s)	538
NlaIII	CATG	7 cut(s)	92, 150, 185, 224, 684, 691, 826
NlaIV	GGNNCC	3 cut(s)	102, 298, 585
NmuCI	GTSAC	1 cut(s)	974
NspI	RCATGY	2 cut(s)	150, 224
PaeI	GCATGC	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	1031
PagI	TCATGA	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PfeI	GAWTC	8 cut(s)	11, 44, 62, 106, 251, 593, 940, 1038
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	2 cut(s)	58, 325
PleI	GAGTC	1 cut(s)	741
PpsI	GAGTC	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	950
Psp6I	CCWGG	3 cut(s)	51, 533, 922
PspFI	CCCAGC	1 cut(s)	794
PspGI	CCWGG	3 cut(s)	51, 533, 922
PspN4I	GGNNCC	3 cut(s)	102, 298, 585
PsrI	GAACNNNNNNTAC	2 cut(s)	774, 806
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	3 cut(s)	100, 118, 583
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	5 cut(s)	298, 343, 349, 446, 630
RsaNI	GTAC	5 cut(s)	297, 342, 348, 445, 629
RseI	CAYNNNNRTG	1 cut(s)	679
SacI	GAGCTC	1 cut(s)	950
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	1004
SatI	GCNGC	2 cut(s)	57, 324
Sau3AI	GATC	3 cut(s)	100, 118, 583
SchI	GAGTC	1 cut(s)	741
ScrFI	CCNGG	3 cut(s)	53, 535, 924
SduI	GDGCHC	3 cut(s)	717, 950, 1032
SfaNI	GCATC	3 cut(s)	677, 683, 816
Sfr274I	CTCGAG	1 cut(s)	1031
SlaI	CTCGAG	1 cut(s)	1031
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	1 cut(s)	1031
SmoI	CTYRAG	1 cut(s)	1031
SpeI	ACTAGT	1 cut(s)	344
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	5 cut(s)	364, 407, 480, 804, 897
SsiI	CCGC	2 cut(s)	57, 230
SspMI	CTAG	4 cut(s)	345, 392, 530, 539
SstI	GAGCTC	1 cut(s)	950
StyD4I	CCNGG	3 cut(s)	51, 533, 922
StyI	CCWWGG	2 cut(s)	181, 574
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	2 cut(s)	634, 696
TaqI	TCGA	3 cut(s)	719, 750, 1032
TasI	AATT	5 cut(s)	364, 407, 480, 804, 897
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	8 cut(s)	11, 44, 62, 106, 251, 593, 940, 1038
Tru1I	TTAA	1 cut(s)	1004
Tru9I	TTAA	1 cut(s)	1004
TscAI	CASTG	3 cut(s)	625, 706, 940
TseFI	GTSAC	1 cut(s)	974
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	974
TspDTI	ATGAA	3 cut(s)	77, 446, 450
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	625, 706, 940
Tth111I	GACNNNGTC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	927
XapI	RAATTY	1 cut(s)	897
XceI	RCATGY	2 cut(s)	150, 224
XhoI	CTCGAG	1 cut(s)	1031
XspI	CTAG	4 cut(s)	345, 392, 530, 539
ZraI	GACGTC	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.