RchiOBHm_Chr5g0070171

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012155
Physical Location & Seq
Forward (+)
75976630 .. 75978751
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34545

Sequence Viewer

Length: 1110 bp
ATGAGCTTCGAATCTTACCCTCCTCCATTTCGCAACCTACTCCAACCGCCACTGAGCAGCCCGGCCCAGATCCTCGATTCGGGATGGGGTGCCCTTAACTCGGATCCTATACCCGTCGTGGATCTTCAGTGCCTTGAGCTTGGGGACTGCAAGCTTCTTGAGGAGCCTTGTAAGCAATGGGGACTTTTTCGTTTGGTCAACCACGGAGTTCCTGAAAGTCTTTTGAGTCAAGCACAGGACTATGCCAGAACGCTTTTTTCTCTTACCTTTGAATCCAAACAGGCCCTTATTACTAGCCCTCTGTCTTACTTCTGGGGTACCCCTGCCCTTACTCCAACTGGGGCGGCGTTATCGGCCGAAAAACTCCAGAATATCAATTTGGTCGAAGGTCTCAACATCCCTCTGAGTCAACTGCCTCGATTTCAAACTGACGATCCTAGAATTGCTTCTTTCTGGTACGTAATACTCCCAAGTCAATTTTGTTTCACTCTGTATCCAAAGTTATTTGGCTCCATTTTTAAATACATCACGACCCTACACATAGGAAGTTGGGAACAATATGGGAGGCATCTAGCTAGAATTGGCAGAACCCTATTTAAAGGTATGTCCACGAGCCTGAGTTTGGATCCAATTGAATACGAGTCAAATTTATCAGAATCTACTGGTTTAGTACGTGTATACCGATACCCACATTGGCCTTCGAAATATAAGAAAGAAAACAAGTCTGCATGGGGAATGGACGTGCACACTGACAGTTCCGTGCTGTCCATACTGAACCAGGACGAGGTCGGTGGCCTTGAAGTGCTCAAAGACAATCAGTGGTTCACTGTGAAACCCATTGCCAACACACTGGTCGTCAATCTTGGAGATATGATGCAGGCGATAAGCGATGATGAATACACAAGTGTGAAACACAGGGTAAAGGTGAACGAATACAGAGAGCGCATTTCAATTTGCTACTTTGTGTTTCCTGGCGAAAACAGTGTGATTCGAAGCTCAAACTACAAGCCTTTTACTTACAGGGATTTTCAAGAACAAGTGCAGAAAGACATAAAGACTGTTGGCTATAAGGTTGGCCTTAACAGATTCAAGCTTAGAGATGCTTGTTAA

Protein Analysis

369

Amino Acids

42.04

Weight (kDa)

6.61

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 37 - 105 8.5e-12 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 227 - 324 7.7e-26 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58660 AT5G58660
fragaria_vesca FvH4_3g38920
malus_domestica MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica Prupe.6G055300_v2.0.a1
pyrus_communis pycom03g05320 pycom11g05970
rosa_chinensis RchiOBHm_Chr5g0070171
rosa_laevigata RLG00000036117
rosa_multiflora Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii Rroxscaffold_1G00010950
rosa_rugosa Rorug05G0403600
rosa_samantha Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana Rw5G042860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 2 cut(s) 89, 317
AccI GTMKAC 1 cut(s) 678
AciI CCGC 2 cut(s) 47, 344
AclWI GGATC 7 cut(s) 64, 98, 111, 129, 428, 620, 633
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 646
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 3 cut(s) 319, 458, 672
AfiI CCNNNNNNNGG 4 cut(s) 79, 100, 622, 784
AflIII ACRYGT 1 cut(s) 673
AgsI TTSAA 7 cut(s) 272, 425, 635, 800, 951, 1031, 1090
AjiI CACGTC 1 cut(s) 742
AjnI CCWGG 2 cut(s) 777, 970
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AleI CACNNNNGTG 1 cut(s) 905
AluBI AGCT 6 cut(s) 6, 139, 154, 575, 996, 1093
AluI AGCT 6 cut(s) 6, 139, 154, 575, 996, 1093
Alw21I GWGCWC 2 cut(s) 747, 807
Alw26I GTCTC 1 cut(s) 395
Alw44I GTGCAC 1 cut(s) 743
AlwI GGATC 7 cut(s) 64, 98, 111, 129, 428, 620, 633
AoxI GGCC 6 cut(s) 63, 282, 354, 695, 793, 1075
ApaLI GTGCAC 1 cut(s) 743
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 646
Asp700I GAANNNNTTC 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 945
AspS9I GGNCC 2 cut(s) 64, 283
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 937
AsuII TTCGAA 3 cut(s) 9, 701, 991
BaeGI GKGCMC 2 cut(s) 94, 747
BamHI GGATCC 2 cut(s) 103, 625
BanI GGYRCC 2 cut(s) 89, 317
BauI CACGAG 1 cut(s) 610
Bbv12I GWGCWC 2 cut(s) 747, 807
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 78
BciT130I CCWGG 2 cut(s) 779, 972
BciVI GTATCC 1 cut(s) 504
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 4 cut(s) 294, 438, 572, 576
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 2 cut(s) 58, 345
BlsI GCNGC 2 cut(s) 59, 346
Bme1390I CCNGG 3 cut(s) 62, 779, 972
BmgBI CACGTC 1 cut(s) 742
BmgT120I GGNCC 2 cut(s) 64, 283
BmiI GGNNCC 6 cut(s) 91, 105, 165, 319, 511, 627
BmrFI CCNGG 3 cut(s) 62, 779, 972
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 3 cut(s) 577, 864, 1090
BmuI ACTGGG 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 350
Bpu14I TTCGAA 3 cut(s) 9, 701, 991
BpuEI CTTGAG 2 cut(s) 155, 179
BpuMI CCSGG 1 cut(s) 62
BsaAI YACGTR 2 cut(s) 460, 674
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 100, 622, 784
Bse1I ACTGG 3 cut(s) 343, 667, 855
Bse3DI GCAATG 2 cut(s) 182, 837
BseBI CCWGG 2 cut(s) 779, 972
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 89, 396
BseLI CCNNNNNNNGG 4 cut(s) 79, 100, 622, 784
BseMI GCAATG 2 cut(s) 182, 837
BseMII CTCAG 3 cut(s) 44, 395, 608
BseNI ACTGG 3 cut(s) 343, 667, 855
BseRI GAGGAG 2 cut(s) 12, 176
BseSI GKGCMC 2 cut(s) 94, 747
BseX3I CGGCCG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 69
BsgI GTGCAG 1 cut(s) 1061
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 6 cut(s) 65, 284, 356, 697, 795, 1077
BshNI GGYRCC 2 cut(s) 89, 317
BsiEI CGRYCG 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 747, 807
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 2 cut(s) 158, 195
BslI CCNNNNNNNGG 4 cut(s) 79, 100, 622, 784
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 158, 195
BsnI GGCC 6 cut(s) 65, 284, 356, 697, 795, 1077
Bso31I GGTCTC 1 cut(s) 395
Bsp119I TTCGAA 3 cut(s) 9, 701, 991
Bsp1286I GDGCHC 3 cut(s) 94, 747, 807
Bsp143I GATC 5 cut(s) 69, 103, 121, 433, 625
BspACI CCGC 2 cut(s) 47, 344
BspANI GGCC 6 cut(s) 65, 284, 356, 697, 795, 1077
BspCNI CTCAG 3 cut(s) 45, 396, 609
BspLI GGNNCC 6 cut(s) 91, 105, 165, 319, 511, 627
BspPI GGATC 7 cut(s) 64, 98, 111, 129, 428, 620, 633
BspT104I TTCGAA 3 cut(s) 9, 701, 991
BspT107I GGYRCC 2 cut(s) 89, 317
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 182, 837
BsrI ACTGG 3 cut(s) 343, 667, 855
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 5 cut(s) 69, 103, 121, 433, 625
BssNAI GTATAC 1 cut(s) 679
BssSI CACGAG 1 cut(s) 610
Bst1107I GTATAC 1 cut(s) 679
Bst2BI CACGAG 1 cut(s) 610
Bst2UI CCWGG 2 cut(s) 779, 972
Bst4CI ACNGT 4 cut(s) 755, 829, 983, 1060
BstBAI YACGTR 2 cut(s) 460, 674
BstBI TTCGAA 3 cut(s) 9, 701, 991
BstC8I GCNNGC 2 cut(s) 152, 879
BstDEI CTNAG 4 cut(s) 53, 404, 617, 1094
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 89, 396
BstHHI GCGC 1 cut(s) 945
BstKTI GATC 5 cut(s) 72, 106, 124, 436, 628
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 5 cut(s) 69, 103, 121, 433, 625
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 2 cut(s) 172, 353
BstNI CCWGG 2 cut(s) 779, 972
BstSCI CCNGG 3 cut(s) 60, 777, 970
BstSLI GKGCMC 2 cut(s) 94, 747
BstSNI TACGTA 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 69
BstX2I RGATCY 4 cut(s) 69, 103, 121, 625
BstXI CCANNNNNNTGG 1 cut(s) 850
BstYI RGATCY 4 cut(s) 69, 103, 121, 625
BstZ17I GTATAC 1 cut(s) 679
BstZI CGGCCG 1 cut(s) 354
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 6 cut(s) 65, 284, 356, 697, 795, 1077
BtgI CCRYGG 1 cut(s) 202
BtgZI GCGATG 1 cut(s) 903
BtrI CACGTC 1 cut(s) 742
BtsCI GGATG 2 cut(s) 89, 396
BtsIMutI CAGTG 7 cut(s) 50, 134, 747, 824, 825, 848, 988
Cac8I GCNNGC 2 cut(s) 152, 879
CfoI GCGC 1 cut(s) 945
Cfr13I GGNCC 2 cut(s) 64, 283
Csp6I GTAC 3 cut(s) 318, 457, 671
CviAII CATG 1 cut(s) 729
CviQI GTAC 3 cut(s) 318, 457, 671
DdeI CTNAG 4 cut(s) 53, 404, 617, 1094
DpnI GATC 5 cut(s) 71, 105, 123, 435, 627
DpnII GATC 5 cut(s) 69, 103, 121, 433, 625
DraI TTTAAA 2 cut(s) 520, 598
EaeI YGGCCR 1 cut(s) 354
EagI CGGCCG 1 cut(s) 354
EclXI CGGCCG 1 cut(s) 354
Eco105I TACGTA 1 cut(s) 460
Eco31I GGTCTC 1 cut(s) 395
Eco52I CGGCCG 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 777, 970
FaeI CATG 1 cut(s) 732
FaqI GGGAC 2 cut(s) 158, 195
FatI CATG 1 cut(s) 728
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 2 cut(s) 58, 345
FokI GGATG 2 cut(s) 96, 383
Fsp4HI GCNGC 2 cut(s) 58, 345
FspBI CTAG 4 cut(s) 294, 438, 572, 576
GlaI GCGC 1 cut(s) 944
GluI GCNGC 2 cut(s) 58, 345
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 6 cut(s) 65, 284, 356, 697, 795, 1077
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 945
Hin1II CATG 1 cut(s) 732
Hin6I GCGC 1 cut(s) 943
HinP1I GCGC 1 cut(s) 943
HincII GTYRAC 2 cut(s) 199, 410
HindII GTYRAC 2 cut(s) 199, 410
HindIII AAGCTT 2 cut(s) 152, 1091
HinfI GANTC 9 cut(s) 11, 77, 226, 272, 406, 641, 656, 988, 1086
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 937
Hpy166II GTNNAC 7 cut(s) 199, 410, 609, 679, 745, 825, 928
Hpy188I TCNGA 3 cut(s) 103, 405, 655
Hpy188III TCNNGA 6 cut(s) 81, 158, 212, 367, 529, 1031
Hpy8I GTNNAC 7 cut(s) 199, 410, 609, 679, 745, 825, 928
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 380, 708
HpyCH4III ACNGT 4 cut(s) 755, 829, 983, 1060
HpyCH4IV ACGT 3 cut(s) 459, 673, 741
HpyCH4V TGCA 5 cut(s) 150, 728, 745, 877, 1042
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 353
HpyF3I CTNAG 4 cut(s) 53, 404, 617, 1094
HpySE526I ACGT 3 cut(s) 459, 673, 741
Hsp92II CATG 1 cut(s) 732
HspAI GCGC 1 cut(s) 943
KpnI GGTACC 1 cut(s) 321
Kzo9I GATC 5 cut(s) 69, 103, 121, 433, 625
LmnI GCTCC 2 cut(s) 163, 515
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 3 cut(s) 577, 864, 1090
MaeI CTAG 4 cut(s) 294, 438, 572, 576
MaeII ACGT 3 cut(s) 459, 673, 741
MalI GATC 5 cut(s) 71, 105, 123, 435, 627
MboI GATC 5 cut(s) 69, 103, 121, 433, 625
MboII GAAGA 1 cut(s) 116
MfeI CAATTG 1 cut(s) 630
MflI RGATCY 4 cut(s) 69, 103, 121, 625
MhlI GDGCHC 3 cut(s) 94, 747, 807
MluCI AATT 7 cut(s) 376, 441, 476, 579, 630, 646, 951
MlyI GAGTC 3 cut(s) 235, 415, 650
MmeI TCCRAC 2 cut(s) 67, 359
MnlI CCTC 9 cut(s) 30, 33, 83, 154, 309, 411, 426, 558, 778
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 5 cut(s) 96, 519, 597, 1080, 1108
MslI CAYNNNNRTG 1 cut(s) 905
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 3 cut(s) 62, 779, 972
MunI CAATTG 1 cut(s) 630
MvaI CCWGG 2 cut(s) 779, 972
MwoI GCNNNNNNNGC 2 cut(s) 172, 353
NciI CCSGG 1 cut(s) 62
NdeII GATC 5 cut(s) 69, 103, 121, 433, 625
NlaIII CATG 1 cut(s) 732
NlaIV GGNNCC 6 cut(s) 91, 105, 165, 319, 511, 627
NspV TTCGAA 3 cut(s) 9, 701, 991
OliI CACNNNNGTG 1 cut(s) 905
PcsI WCGNNNNNNNCGW 1 cut(s) 679
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 6 cut(s) 11, 77, 272, 656, 988, 1086
PflFI GACNNNGTC 1 cut(s) 785
PkrI GCNGC 2 cut(s) 59, 346
PleI GAGTC 3 cut(s) 234, 414, 649
PpsI GAGTC 3 cut(s) 234, 414, 649
Ppu21I YACGTR 2 cut(s) 460, 674
Psp6I CCWGG 2 cut(s) 777, 970
PspGI CCWGG 2 cut(s) 777, 970
PspN4I GGNNCC 6 cut(s) 91, 105, 165, 319, 511, 627
PspPI GGNCC 2 cut(s) 64, 283
PsuI RGATCY 4 cut(s) 69, 103, 121, 625
PsyI GACNNNGTC 1 cut(s) 785
RsaI GTAC 3 cut(s) 319, 458, 672
RsaNI GTAC 3 cut(s) 318, 457, 671
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 5 cut(s) 96, 519, 597, 1080, 1108
SatI GCNGC 2 cut(s) 58, 345
Sau3AI GATC 5 cut(s) 69, 103, 121, 433, 625
Sau96I GGNCC 2 cut(s) 64, 283
SchI GAGTC 3 cut(s) 235, 415, 650
ScrFI CCNGG 3 cut(s) 62, 779, 972
SduI GDGCHC 3 cut(s) 94, 747, 807
SfaNI GCATC 3 cut(s) 577, 864, 1090
SfuI TTCGAA 3 cut(s) 9, 701, 991
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 2 cut(s) 134, 158
SmoI CTYRAG 2 cut(s) 134, 158
SnaBI TACGTA 1 cut(s) 460
Sse9I AATT 7 cut(s) 376, 441, 476, 579, 630, 646, 951
SsiI CCGC 2 cut(s) 47, 344
SspMI CTAG 4 cut(s) 294, 438, 572, 576
StyD4I CCNGG 3 cut(s) 60, 777, 970
TaaI ACNGT 4 cut(s) 755, 829, 983, 1060
TaiI ACGT 3 cut(s) 462, 676, 744
TaqI TCGA 6 cut(s) 9, 75, 384, 418, 701, 991
TasI AATT 7 cut(s) 376, 441, 476, 579, 630, 646, 951
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 6 cut(s) 11, 77, 272, 656, 988, 1086
Tru1I TTAA 5 cut(s) 96, 519, 597, 1080, 1108
Tru9I TTAA 5 cut(s) 96, 519, 597, 1080, 1108
TscAI CASTG 7 cut(s) 57, 134, 754, 824, 832, 855, 988
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 909
TspGWI ACGGA 2 cut(s) 219, 748
TspRI CASTG 7 cut(s) 57, 134, 754, 824, 832, 855, 988
Tth111I GACNNNGTC 1 cut(s) 785
VneI GTGCAC 1 cut(s) 743
XapI RAATTY 1 cut(s) 646
XmiI GTMKAC 1 cut(s) 678
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 4 cut(s) 294, 438, 572, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.