Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012155

Physical Location & Seq

Genomic Coordinates Reverse (-)

6098728 .. 6100787

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1071600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGTTGCTGTCCCATTCTCTTGGCTGCTCATTTGCTATAAGAATCAGCCTCCTGCCCAACAACAAGACGATAACCTCCATTGTTCTGAGAAAAAAATGGCTTCTGAATCCTACCCTCCTCTGTTCCGTTCACACACAGATTCAACCCAGGCCGCTGATTTGGATGACCAACTCAACCCAGTTCATGATTTGGAGGATCCGATTCCTCTGGTGGATCTCCAGAGCCTGAAACTTGGGGAGGCATGTGAGTTTTGGGGCATTTTTCGTTTGGTCGACCATGGAGTTCCTCCAACCCTTTTGACCCAACTTGAAGAGCATGCCAAAGCGGTTTTTTCCCTGCCGTTTGAATCCAAACAGAGCCTTATCACCAGCCCTCTGTCCTACTTCTGGGGTACCCCTGCCCTAACTCCATCTGGGGCAGCCTTATCAACAAAGGGTACTAGTACCCTCCAGAATATCAATTGGGTTGAAGGACTGAATGTCCCTCTAGCTCAACTCAGTCAATTCCAAACTGACAATCCCACAGTTGCTTCTTTCAGCCTTGTGCTGGAAGAATATGGGAAGCACCTAGCCAGGCTAGCCACAACTATATTTGAAGCTATGGTAAAAAGCCTTGGAATGGATCCAATAGAATCCAAATCCCACTTATCCAATTCCACTGGCGTTGTACGTGTCTATCGCTACCCCCCACATTGCTCCAACTCTGCATCTGCATCTGCATGGGGCATGGACGTCCACACTGACAGCTCTGTGCTCTCGATACTAAACCAAGATGATGTCGGTGGACTCGAAGTTCTCAAAGACACCGAGTGGTTCAATGTAAACCCAATTCCCAGCACACTAGTTGTCAACCTCGGGGACATGATGCAGGCGATAAGCGACGACAAATACAAGAGTGTGAAGCACAGAGTGAAGGTGAACAGAAGCAAAGAGAGAATTTCAATCTGCTACTTCGTGTTTCCTGGAGAAGGCAGTGTGATTCGGAGCTCAAACTACAAGCCCTTTACATACAGTGACTTTCAGAAGGAAGTGCAGAAAGATTTAAAGACTGTTGGTTATAAGGTTGGGCTCGAGAGATTCAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

363

Amino Acids

40.26

Weight (kDa)

5.59

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	69 - 160	8.4e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	223 - 321	4.4e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58660 AT5G58660
fragaria_vesca	FvH4_3g38920
malus_domestica	MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica	Prupe.6G055300_v2.0.a1
pyrus_communis	pycom03g05320 pycom11g05970
rosa_chinensis	RchiOBHm_Chr5g0070171
rosa_laevigata	RLG00000036117
rosa_multiflora	Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii	Rroxscaffold_1G00010950
rosa_rugosa	Rorug05G0403600
rosa_samantha	Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana	Rw5G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1059
AatII	GACGTC	1 cut(s)	735
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	2 cut(s)	153, 326
AclWI	GGATC	5 cut(s)	191, 204, 222, 617, 630
AcsI	RAATTY	1 cut(s)	936
AcyI	GRCGYC	1 cut(s)	732
AdeI	CACNNNGTG	2 cut(s)	810, 910
AfaI	GTAC	4 cut(s)	394, 439, 445, 669
AfiI	CCNNNNNNNGG	4 cut(s)	387, 547, 619, 968
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	8 cut(s)	144, 311, 347, 470, 596, 817, 942, 1081
AhdI	GACNNNNNGTC	1 cut(s)	479
AhlI	ACTAGT	2 cut(s)	440, 841
AjnI	CCWGG	3 cut(s)	147, 572, 961
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
AluBI	AGCT	5 cut(s)	491, 599, 747, 987, 1085
AluI	AGCT	5 cut(s)	491, 599, 747, 987, 1085
Alw21I	GWGCWC	2 cut(s)	756, 989
AlwI	GGATC	5 cut(s)	191, 204, 222, 617, 630
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	2 cut(s)	854, 1070
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	25, 419
ApoI	RAATTY	1 cut(s)	936
Asp718I	GGTACC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	358, 928
AsuNHI	GCTAGC	1 cut(s)	577
AvaI	CYCGRG	2 cut(s)	854, 1070
BamHI	GGATCC	2 cut(s)	196, 622
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	989, 1071
Bbv12I	GWGCWC	2 cut(s)	756, 989
BbvI	GCAGC	2 cut(s)	12, 431
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	325
BciT130I	CCWGG	3 cut(s)	149, 574, 963
BcuI	ACTAGT	2 cut(s)	440, 841
BfaI	CTAG	5 cut(s)	441, 488, 569, 578, 842
BisI	GCNGC	3 cut(s)	26, 153, 420
BlsI	GCNGC	3 cut(s)	27, 154, 421
Bme1390I	CCNGG	3 cut(s)	149, 574, 963
BmeRI	GACNNNNNGTC	1 cut(s)	479
BmeT110I	CYCGRG	2 cut(s)	854, 1070
BmiI	GGNNCC	3 cut(s)	198, 394, 624
BmrFI	CCNGG	3 cut(s)	149, 574, 963
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	716, 722, 855
BmtI	GCTAGC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	173
BpmI	CTGGAG	3 cut(s)	203, 434, 984
BsaAI	YACGTR	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	732
BsaJI	CCNNGG	4 cut(s)	147, 277, 613, 853
Bsc4I	CCNNNNNNNGG	4 cut(s)	387, 547, 619, 968
Bse1I	ACTGG	2 cut(s)	179, 664
Bse3DI	GCAATG	1 cut(s)	691
BseBI	CCWGG	3 cut(s)	149, 574, 963
BseDI	CCNNGG	4 cut(s)	147, 277, 613, 853
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	4 cut(s)	387, 547, 619, 968
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	2 cut(s)	78, 511
BseNI	ACTGG	2 cut(s)	179, 664
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	12, 431
BseYI	CCCAGC	1 cut(s)	833
BsgI	GTGCAG	1 cut(s)	1052
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	2 cut(s)	756, 989
BsiHKCI	CYCGRG	2 cut(s)	854, 1070
BslFI	GGGAC	2 cut(s)	467, 872
BslI	CCNNNNNNNGG	4 cut(s)	387, 547, 619, 968
BsmFI	GGGAC	2 cut(s)	467, 872
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	2 cut(s)	854, 1070
Bsp1286I	GDGCHC	3 cut(s)	756, 989, 1071
Bsp143I	GATC	3 cut(s)	196, 214, 622
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	153, 326
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	79, 510
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	198, 394, 624
BspOI	GCTAGC	1 cut(s)	581
BspPI	GGATC	5 cut(s)	191, 204, 222, 617, 630
BspQI	GCTCTTC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	179, 664
BssECI	CCNNGG	4 cut(s)	147, 277, 613, 853
BssMI	GATC	3 cut(s)	196, 214, 622
BssNI	GRCGYC	1 cut(s)	732
BssT1I	CCWWGG	2 cut(s)	277, 613
Bst2UI	CCWGG	3 cut(s)	149, 574, 963
Bst4CI	ACNGT	3 cut(s)	526, 1013, 1051
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	732
BstBAI	YACGTR	1 cut(s)	671
BstC8I	GCNNGC	3 cut(s)	318, 579, 870
BstDEI	CTNAG	3 cut(s)	87, 497, 1086
BstDSI	CCRYGG	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	3 cut(s)	199, 217, 625
BstMBI	GATC	3 cut(s)	196, 214, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	3 cut(s)	149, 574, 963
BstNSI	RCATGY	2 cut(s)	246, 320
BstSCI	CCNGG	3 cut(s)	147, 572, 961
BstV1I	GCAGC	2 cut(s)	12, 431
BstX2I	RGATCY	3 cut(s)	196, 214, 622
BstXI	CCANNNNNNTGG	1 cut(s)	21
BstYI	RGATCY	3 cut(s)	196, 214, 622
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	979
BtsIMutI	CAGTG	4 cut(s)	657, 738, 979, 1018
Cac8I	GCNNGC	3 cut(s)	318, 579, 870
CaiI	CAGNNNCTG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	184
Csp6I	GTAC	4 cut(s)	393, 438, 444, 668
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	7 cut(s)	185, 243, 278, 317, 720, 727, 862
CviQI	GTAC	4 cut(s)	393, 438, 444, 668
DdeI	CTNAG	3 cut(s)	87, 497, 1086
DpnI	GATC	3 cut(s)	198, 216, 624
DpnII	GATC	3 cut(s)	196, 214, 622
DraI	TTTAAA	1 cut(s)	1044
DraIII	CACNNNGTG	2 cut(s)	810, 910
DriI	GACNNNNNGTC	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	306
Eam1105I	GACNNNNNGTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	987
Eco130I	CCWWGG	2 cut(s)	277, 613
Eco24I	GRGCYC	2 cut(s)	989, 1071
Eco53kI	GAGCTC	1 cut(s)	987
Eco88I	CYCGRG	2 cut(s)	854, 1070
EcoICRI	GAGCTC	1 cut(s)	987
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoRII	CCWGG	3 cut(s)	147, 572, 961
EcoT14I	CCWWGG	2 cut(s)	277, 613
EcoT38I	GRGCYC	2 cut(s)	989, 1071
ErhI	CCWWGG	2 cut(s)	277, 613
FaeI	CATG	7 cut(s)	188, 246, 281, 320, 723, 730, 865
FaqI	GGGAC	2 cut(s)	467, 872
FatI	CATG	7 cut(s)	184, 242, 277, 316, 719, 726, 861
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	26, 153, 420
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	2 cut(s)	989, 1071
Fsp4HI	GCNGC	3 cut(s)	26, 153, 420
FspBI	CTAG	5 cut(s)	441, 488, 569, 578, 842
GluI	GCNGC	3 cut(s)	26, 153, 420
GsaI	CCCAGC	1 cut(s)	837
GsuI	CTGGAG	3 cut(s)	203, 434, 984
HaeIII	GGCC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	732
Hin1II	CATG	7 cut(s)	188, 246, 281, 320, 723, 730, 865
HincII	GTYRAC	2 cut(s)	274, 850
HindII	GTYRAC	2 cut(s)	274, 850
HindIII	AAGCTT	1 cut(s)	1083
HinfI	GANTC	9 cut(s)	43, 107, 140, 202, 347, 632, 786, 979, 1077
HphI	GGTGA	2 cut(s)	358, 928
Hpy166II	GTNNAC	7 cut(s)	131, 274, 736, 785, 823, 850, 919
Hpy188I	TCNGA	5 cut(s)	88, 106, 201, 984, 1023
Hpy188III	TCNNGA	5 cut(s)	185, 220, 451, 757, 1072
Hpy8I	GTNNAC	7 cut(s)	131, 274, 736, 785, 823, 850, 919
Hpy99I	CGWCG	1 cut(s)	884
HpyAV	CCTTC	4 cut(s)	464, 907, 962, 1018
HpyCH4III	ACNGT	3 cut(s)	526, 1013, 1051
HpyCH4IV	ACGT	2 cut(s)	670, 732
HpyCH4V	TGCA	5 cut(s)	707, 713, 719, 868, 1033
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	3 cut(s)	87, 497, 1086
HpySE526I	ACGT	2 cut(s)	670, 732
Hsp92I	GRCGYC	1 cut(s)	732
Hsp92II	CATG	7 cut(s)	188, 246, 281, 320, 723, 730, 865
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	196, 214, 622
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	701, 984
Lsp1109I	GCAGC	2 cut(s)	12, 431
LweI	GCATC	3 cut(s)	716, 722, 855
MaeI	CTAG	5 cut(s)	441, 488, 569, 578, 842
MaeII	ACGT	2 cut(s)	670, 732
MaeIII	GTNAC	1 cut(s)	1013
MalI	GATC	3 cut(s)	198, 216, 624
MboI	GATC	3 cut(s)	196, 214, 622
MboII	GAAGA	2 cut(s)	323, 563
MfeI	CAATTG	1 cut(s)	460
MflI	RGATCY	3 cut(s)	196, 214, 622
MhlI	GDGCHC	3 cut(s)	756, 989, 1071
MluCI	AATT	5 cut(s)	460, 503, 652, 828, 936
MlyI	GAGTC	1 cut(s)	780
MmeI	TCCRAC	2 cut(s)	314, 723
MseI	TTAA	1 cut(s)	1043
MslI	CAYNNNNRTG	1 cut(s)	718
MspA1I	CMGCKG	1 cut(s)	155
MspR9I	CCNGG	3 cut(s)	149, 574, 963
MunI	CAATTG	1 cut(s)	460
MvaI	CCWGG	3 cut(s)	149, 574, 963
MwoI	GCNNNNNNNGC	1 cut(s)	578
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	3 cut(s)	196, 214, 622
NheI	GCTAGC	1 cut(s)	577
NlaIII	CATG	7 cut(s)	188, 246, 281, 320, 723, 730, 865
NlaIV	GGNNCC	3 cut(s)	198, 394, 624
NmuCI	GTSAC	1 cut(s)	1013
NspI	RCATGY	2 cut(s)	246, 320
PaeI	GCATGC	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	1070
PagI	TCATGA	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PfeI	GAWTC	8 cut(s)	43, 107, 140, 202, 347, 632, 979, 1077
PfoI	TCCNGGA	1 cut(s)	961
PkrI	GCNGC	3 cut(s)	27, 154, 421
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
Ppu21I	YACGTR	1 cut(s)	671
PsiI	TTATAA	1 cut(s)	1059
Psp124BI	GAGCTC	1 cut(s)	989
Psp6I	CCWGG	3 cut(s)	147, 572, 961
PspFI	CCCAGC	1 cut(s)	833
PspGI	CCWGG	3 cut(s)	147, 572, 961
PspN4I	GGNNCC	3 cut(s)	198, 394, 624
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	3 cut(s)	196, 214, 622
RsaI	GTAC	4 cut(s)	394, 439, 445, 669
RsaNI	GTAC	4 cut(s)	393, 438, 444, 668
RseI	CAYNNNNRTG	1 cut(s)	718
SacI	GAGCTC	1 cut(s)	989
SalI	GTCGAC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	1043
SatI	GCNGC	3 cut(s)	26, 153, 420
Sau3AI	GATC	3 cut(s)	196, 214, 622
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	3 cut(s)	149, 574, 963
SduI	GDGCHC	3 cut(s)	756, 989, 1071
SfaNI	GCATC	3 cut(s)	716, 722, 855
Sfr274I	CTCGAG	1 cut(s)	1070
SlaI	CTCGAG	1 cut(s)	1070
SmiMI	CAYNNNNRTG	1 cut(s)	718
SmlI	CTYRAG	1 cut(s)	1070
SmoI	CTYRAG	1 cut(s)	1070
SpeI	ACTAGT	2 cut(s)	440, 841
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	5 cut(s)	460, 503, 652, 828, 936
SsiI	CCGC	2 cut(s)	153, 326
SspMI	CTAG	5 cut(s)	441, 488, 569, 578, 842
SstI	GAGCTC	1 cut(s)	989
StyD4I	CCNGG	3 cut(s)	147, 572, 961
StyI	CCWWGG	2 cut(s)	277, 613
TaaI	ACNGT	3 cut(s)	526, 1013, 1051
TaiI	ACGT	2 cut(s)	673, 735
TaqI	TCGA	4 cut(s)	273, 758, 789, 1071
TasI	AATT	5 cut(s)	460, 503, 652, 828, 936
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	8 cut(s)	43, 107, 140, 202, 347, 632, 979, 1077
Tru1I	TTAA	1 cut(s)	1043
Tru9I	TTAA	1 cut(s)	1043
TscAI	CASTG	4 cut(s)	664, 745, 979, 1018
TseFI	GTSAC	1 cut(s)	1013
TseI	GCWGC	2 cut(s)	25, 419
Tsp45I	GTSAC	1 cut(s)	1013
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	4 cut(s)	664, 745, 979, 1018
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	1 cut(s)	936
XceI	RCATGY	2 cut(s)	246, 320
XhoI	CTCGAG	1 cut(s)	1070
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	5 cut(s)	441, 488, 569, 578, 842
ZraI	GACGTC	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.