Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012155

Physical Location & Seq

Genomic Coordinates Forward (+)

76978066 .. 76980455

Gene Structure 2390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG489900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGCTTCGAATCTTACCCTCCTCCATTTCGCAACCTACTCCAACCGCCACTGAGCAGCCCGGCCCAGATCCTCGATTCGGGATGGGGTGCCCTTAACTCGGATCCTATACCCGTCGTGGATCTTCAGTGCCTTGAGCTTGGGGACTGCAAGCTTCTTGAGGAGCCTTGTAAGCAATGGGGACTTTTTCGTTTGGTCAACCACGGAGTTCCTGAAAGTCTTTTGAGTCAAGTACAGGACTATGCCAGAACGCTTTTTTCTCTTACCTTTGAATCCAAACAGGCCCTTATTGTTAGCCCTCTGTCTTACTTCTGGGGTACCCCAGCCCTTACTCCAACTGGGGCGGCGTTATCGGCCGAAAAACTCCAGAATATCAATTTGGTCGAAGGTCTCAACGTCCCTCTGAGTCAACTGCCTCGATTTCAAACTGACGATCCTAGAATTGCTTCTTTCTGCCATGTGCTAGAAGAATATGGGAGGCATCTAGCTAGAATTGGCAGAACCCTATTTAAAGGTATGTCCACGAGCCTGAGTTTGGATCCAATAGAATACGAGTCAAATTTATCAGAGTCTACTGGTTTAGTACGTGTATACCGCTACCCACATTGGCCTTCGAAATATAAGAAAGAAAACAAGTCTGCATGGGGAATGGACGTGCACACTGACAGTTCCGTGCTGTCCATACTGAACCAGGACGAGGTCGGTGGCCTTGAAGTGCTCAAAGACAATCAGTGGTTCACTGTGAAACCCATTCGCAACACACTGGTCGTCAATCTTGGAGATATGATGCAGGCGATAAGCGATGATGAATACACAAGTGTGAAACACAGGGTAAAGGTGAACGAATACAGAGAGCGCATTTCAATTTGCTACTTTGTGTTTCCTGGCGAAAACAGTGTGATTCGAAGCTCAAACTACAAGCCTTTTACTTACAGGGATTTTCAAGAACAAGTGCAGAAAGACATAAAGACTGTTGGCTATAAGGTTGGCCTTAACAGATTCAAGCTTAGAGATGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

340

Amino Acids

38.64

Weight (kDa)

6.12

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	37 - 104	8.9e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	198 - 295	3.4e-26	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58660 AT5G58660
fragaria_vesca	FvH4_3g38920
malus_domestica	MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica	Prupe.6G055300_v2.0.a1
pyrus_communis	pycom03g05320 pycom11g05970
rosa_chinensis	RchiOBHm_Chr5g0070171
rosa_laevigata	RLG00000036117
rosa_multiflora	Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii	Rroxscaffold_1G00010950
rosa_rugosa	Rorug05G0403600
rosa_samantha	Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana	Rw5G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	2 cut(s)	89, 317
AccI	GTMKAC	2 cut(s)	572, 591
AciI	CCGC	3 cut(s)	47, 344, 595
AclWI	GGATC	7 cut(s)	64, 98, 111, 129, 428, 533, 546
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	3 cut(s)	234, 319, 585
AfiI	CCNNNNNNNGG	4 cut(s)	79, 100, 535, 697
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	6 cut(s)	272, 425, 713, 864, 944, 1003
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	690, 883
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AleI	CACNNNNGTG	1 cut(s)	818
AluBI	AGCT	6 cut(s)	6, 139, 154, 488, 909, 1006
AluI	AGCT	6 cut(s)	6, 139, 154, 488, 909, 1006
Alw21I	GWGCWC	2 cut(s)	660, 720
Alw26I	GTCTC	1 cut(s)	395
Alw44I	GTGCAC	1 cut(s)	656
AlwI	GGATC	7 cut(s)	64, 98, 111, 129, 428, 533, 546
AoxI	GGCC	6 cut(s)	63, 282, 354, 608, 706, 988
ApaLI	GTGCAC	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	1 cut(s)	445
Asp718I	GGTACC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	2 cut(s)	64, 283
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	850
AsuII	TTCGAA	3 cut(s)	9, 614, 904
BaeGI	GKGCMC	2 cut(s)	94, 660
BamHI	GGATCC	2 cut(s)	103, 538
BanI	GGYRCC	2 cut(s)	89, 317
BauI	CACGAG	1 cut(s)	523
Bbv12I	GWGCWC	2 cut(s)	660, 720
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	78
BciT130I	CCWGG	2 cut(s)	692, 885
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	4 cut(s)	438, 464, 485, 489
BisI	GCNGC	2 cut(s)	58, 345
BlsI	GCNGC	2 cut(s)	59, 346
Bme1390I	CCNGG	3 cut(s)	62, 692, 885
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	64, 283
BmiI	GGNNCC	5 cut(s)	91, 105, 165, 319, 540
BmrFI	CCNGG	3 cut(s)	62, 692, 885
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	490, 777, 1003
BmuI	ACTGGG	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	350
Bpu14I	TTCGAA	3 cut(s)	9, 614, 904
BpuEI	CTTGAG	2 cut(s)	155, 179
BpuMI	CCSGG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 100, 535, 697
Bse1I	ACTGG	3 cut(s)	343, 580, 768
Bse3DI	GCAATG	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	692, 885
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	4 cut(s)	79, 100, 535, 697
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	3 cut(s)	44, 395, 521
BseNI	ACTGG	3 cut(s)	343, 580, 768
BseRI	GAGGAG	2 cut(s)	12, 176
BseSI	GKGCMC	2 cut(s)	94, 660
BseX3I	CGGCCG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	974
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	6 cut(s)	65, 284, 356, 610, 708, 990
BshNI	GGYRCC	2 cut(s)	89, 317
BsiEI	CGRYCG	1 cut(s)	357
BsiHKAI	GWGCWC	2 cut(s)	660, 720
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	3 cut(s)	158, 195, 383
BslI	CCNNNNNNNGG	4 cut(s)	79, 100, 535, 697
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	3 cut(s)	158, 195, 383
BsnI	GGCC	6 cut(s)	65, 284, 356, 610, 708, 990
Bso31I	GGTCTC	1 cut(s)	395
Bsp119I	TTCGAA	3 cut(s)	9, 614, 904
Bsp1286I	GDGCHC	3 cut(s)	94, 660, 720
Bsp143I	GATC	5 cut(s)	69, 103, 121, 433, 538
BspACI	CCGC	3 cut(s)	47, 344, 595
BspANI	GGCC	6 cut(s)	65, 284, 356, 610, 708, 990
BspCNI	CTCAG	3 cut(s)	45, 396, 522
BspLI	GGNNCC	5 cut(s)	91, 105, 165, 319, 540
BspPI	GGATC	7 cut(s)	64, 98, 111, 129, 428, 533, 546
BspT104I	TTCGAA	3 cut(s)	9, 614, 904
BspT107I	GGYRCC	2 cut(s)	89, 317
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	343, 580, 768
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	5 cut(s)	69, 103, 121, 433, 538
BssNAI	GTATAC	1 cut(s)	592
BssSI	CACGAG	1 cut(s)	523
Bst1107I	GTATAC	1 cut(s)	592
Bst2BI	CACGAG	1 cut(s)	523
Bst2UI	CCWGG	2 cut(s)	692, 885
Bst4CI	ACNGT	4 cut(s)	668, 742, 896, 973
BstBAI	YACGTR	1 cut(s)	587
BstBI	TTCGAA	3 cut(s)	9, 614, 904
BstC8I	GCNNGC	2 cut(s)	152, 792
BstDEI	CTNAG	4 cut(s)	53, 404, 530, 1007
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	5 cut(s)	72, 106, 124, 436, 541
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	5 cut(s)	69, 103, 121, 433, 538
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 353
BstNI	CCWGG	2 cut(s)	692, 885
BstSCI	CCNGG	3 cut(s)	60, 690, 883
BstSLI	GKGCMC	2 cut(s)	94, 660
BstV1I	GCAGC	1 cut(s)	69
BstX2I	RGATCY	4 cut(s)	69, 103, 121, 538
BstYI	RGATCY	4 cut(s)	69, 103, 121, 538
BstZ17I	GTATAC	1 cut(s)	592
BstZI	CGGCCG	1 cut(s)	354
BsuRI	GGCC	6 cut(s)	65, 284, 356, 610, 708, 990
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	816
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	7 cut(s)	50, 134, 660, 737, 738, 761, 901
Cac8I	GCNNGC	2 cut(s)	152, 792
CfoI	GCGC	1 cut(s)	858
Cfr13I	GGNCC	2 cut(s)	64, 283
Csp6I	GTAC	3 cut(s)	233, 318, 584
CviAII	CATG	2 cut(s)	458, 642
CviQI	GTAC	3 cut(s)	233, 318, 584
DdeI	CTNAG	4 cut(s)	53, 404, 530, 1007
DpnI	GATC	5 cut(s)	71, 105, 123, 435, 540
DpnII	GATC	5 cut(s)	69, 103, 121, 433, 538
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	354
EagI	CGGCCG	1 cut(s)	354
EclXI	CGGCCG	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	395
Eco52I	CGGCCG	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	690, 883
FaeI	CATG	2 cut(s)	461, 645
FaqI	GGGAC	3 cut(s)	158, 195, 383
FatI	CATG	2 cut(s)	457, 641
FblI	GTMKAC	2 cut(s)	572, 591
Fnu4HI	GCNGC	2 cut(s)	58, 345
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	58, 345
FspBI	CTAG	4 cut(s)	438, 464, 485, 489
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	2 cut(s)	58, 345
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	6 cut(s)	65, 284, 356, 610, 708, 990
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	858
Hin1II	CATG	2 cut(s)	461, 645
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HincII	GTYRAC	2 cut(s)	199, 410
HindII	GTYRAC	2 cut(s)	199, 410
HindIII	AAGCTT	2 cut(s)	152, 1004
HinfI	GANTC	9 cut(s)	11, 77, 226, 272, 406, 554, 569, 901, 999
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	8 cut(s)	199, 410, 522, 573, 592, 658, 738, 841
Hpy188I	TCNGA	3 cut(s)	103, 405, 568
Hpy188III	TCNNGA	5 cut(s)	81, 158, 212, 367, 944
Hpy8I	GTNNAC	8 cut(s)	199, 410, 522, 573, 592, 658, 738, 841
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	380, 621
HpyCH4III	ACNGT	4 cut(s)	668, 742, 896, 973
HpyCH4IV	ACGT	3 cut(s)	396, 586, 654
HpyCH4V	TGCA	5 cut(s)	150, 641, 658, 790, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 353
HpyF3I	CTNAG	4 cut(s)	53, 404, 530, 1007
HpySE526I	ACGT	3 cut(s)	396, 586, 654
Hsp92II	CATG	2 cut(s)	461, 645
HspAI	GCGC	1 cut(s)	856
KpnI	GGTACC	1 cut(s)	321
Kzo9I	GATC	5 cut(s)	69, 103, 121, 433, 538
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	3 cut(s)	490, 777, 1003
MaeI	CTAG	4 cut(s)	438, 464, 485, 489
MaeII	ACGT	3 cut(s)	396, 586, 654
MalI	GATC	5 cut(s)	71, 105, 123, 435, 540
MboI	GATC	5 cut(s)	69, 103, 121, 433, 538
MboII	GAAGA	2 cut(s)	116, 479
MflI	RGATCY	4 cut(s)	69, 103, 121, 538
MhlI	GDGCHC	3 cut(s)	94, 660, 720
MluCI	AATT	5 cut(s)	376, 441, 492, 559, 864
MlyI	GAGTC	4 cut(s)	235, 415, 563, 578
MmeI	TCCRAC	2 cut(s)	67, 359
MnlI	CCTC	9 cut(s)	30, 33, 83, 154, 309, 411, 426, 471, 691
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	4 cut(s)	96, 510, 993, 1021
MslI	CAYNNNNRTG	1 cut(s)	818
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	3 cut(s)	62, 692, 885
MvaI	CCWGG	2 cut(s)	692, 885
MwoI	GCNNNNNNNGC	2 cut(s)	172, 353
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	5 cut(s)	69, 103, 121, 433, 538
NlaIII	CATG	2 cut(s)	461, 645
NlaIV	GGNNCC	5 cut(s)	91, 105, 165, 319, 540
NspV	TTCGAA	3 cut(s)	9, 614, 904
OliI	CACNNNNGTG	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	5 cut(s)	11, 77, 272, 901, 999
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	2 cut(s)	59, 346
PleI	GAGTC	4 cut(s)	234, 414, 562, 577
PpsI	GAGTC	4 cut(s)	234, 414, 562, 577
Ppu21I	YACGTR	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	690, 883
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	2 cut(s)	690, 883
PspN4I	GGNNCC	5 cut(s)	91, 105, 165, 319, 540
PspPI	GGNCC	2 cut(s)	64, 283
PsuI	RGATCY	4 cut(s)	69, 103, 121, 538
PsyI	GACNNNGTC	1 cut(s)	698
RsaI	GTAC	3 cut(s)	234, 319, 585
RsaNI	GTAC	3 cut(s)	233, 318, 584
RseI	CAYNNNNRTG	1 cut(s)	818
SaqAI	TTAA	4 cut(s)	96, 510, 993, 1021
SatI	GCNGC	2 cut(s)	58, 345
Sau3AI	GATC	5 cut(s)	69, 103, 121, 433, 538
Sau96I	GGNCC	2 cut(s)	64, 283
SchI	GAGTC	4 cut(s)	235, 415, 563, 578
ScrFI	CCNGG	3 cut(s)	62, 692, 885
SduI	GDGCHC	3 cut(s)	94, 660, 720
SfaNI	GCATC	3 cut(s)	490, 777, 1003
SfuI	TTCGAA	3 cut(s)	9, 614, 904
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	2 cut(s)	134, 158
SmoI	CTYRAG	2 cut(s)	134, 158
Sse9I	AATT	5 cut(s)	376, 441, 492, 559, 864
SsiI	CCGC	3 cut(s)	47, 344, 595
SspMI	CTAG	4 cut(s)	438, 464, 485, 489
StyD4I	CCNGG	3 cut(s)	60, 690, 883
TaaI	ACNGT	4 cut(s)	668, 742, 896, 973
TaiI	ACGT	3 cut(s)	399, 589, 657
TaqI	TCGA	6 cut(s)	9, 75, 384, 418, 614, 904
TasI	AATT	5 cut(s)	376, 441, 492, 559, 864
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	5 cut(s)	11, 77, 272, 901, 999
Tru1I	TTAA	4 cut(s)	96, 510, 993, 1021
Tru9I	TTAA	4 cut(s)	96, 510, 993, 1021
TscAI	CASTG	7 cut(s)	57, 134, 667, 737, 745, 768, 901
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	822
TspGWI	ACGGA	2 cut(s)	219, 661
TspRI	CASTG	7 cut(s)	57, 134, 667, 737, 745, 768, 901
Tth111I	GACNNNGTC	1 cut(s)	698
VneI	GTGCAC	1 cut(s)	656
XapI	RAATTY	1 cut(s)	559
XmiI	GTMKAC	2 cut(s)	572, 591
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	4 cut(s)	438, 464, 485, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.