Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012155

Physical Location & Seq

Genomic Coordinates Forward (+)

33178992 .. 33181291

Gene Structure 2300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGCTTTGAATCTTATCCTCCTCCATTTCGCAACCTACTGAGCCACCCGGCCAAGATCGTCGATTTGGGTTGTGGGGCCCTCGACCTCGACTCAGATCCTATACCAGTCGTGGATCTCCAGTGCCTTGAGCTTGGGGACTGCAAGCTTCTTGAGGAGCCTTGTAAGCAATGGGGTCTTTTTCGTTTAGTGAACCACGGAGTTCCTGAAAGCCTTTTGATTCAACTCCAAAACCTTGCCAGAACGTTTTTTTCACTTCCCTTTGAATCCAAACAGGCCCTTACCACGAATCCTTTTTCGTACTTCTGGGGTACTCCTGCCCTTACTCCGACTGGGGATGCCGGAAAACTCCAGAATATCAATCTGGTCGAAGGTCTCAACGTGCCTCTCAGTCAACTGCCTCGATTTCAAACTGACGATCCTATACTTGCTTCTTTCTGCCATTTGCTAGAAGAATATGGGAAGCATCTAGCTAGAATTGGCAGAACCCTATTTGAAGGTATGTCCAAGAACCTGAGTCTGGATCCAAGTGACTCCAAATCAAACTTATCAGAATCTACTGGTTTAGTACGTGTATACCGATACCCACAGTGGCCTACGAAATCTAAAAACCAAAACAAGTCTGCATGGGGAATGGACGTGCACACTGACAGTTCAGTGCTGTCCATACTGAACCAGGACGAGGTTGGCGGCCTTGAAGTGCTCAAAGACAATCACTGGTGCACTGTGAAACCCATTCCCAACACTCTGGTCGTCAATCTTGGAGATATGATGCAGGCGATAAGCGATGACAAATACACGAGTGTGAAACACAGGGTGAAGGTGAACGAATACAGAGAGCGCATATCAGTTTGCTACTTTGTGTTTCCTGGCGAAGGCAGTGTGATTCGAAGCTCGAACTACAAGCCTTTTACATACAGTGATTTTCAAGGACAAGTGCAGCAAGACATAAAGAGTATTGGCTATAAGGTTGGCCTTGACAGATTTAAGCTTAGAGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

335

Amino Acids

37.59

Weight (kDa)

6.0

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	35 - 112	1.6e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	193 - 290	1e-26	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58660 AT5G58660
fragaria_vesca	FvH4_3g38920
malus_domestica	MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica	Prupe.6G055300_v2.0.a1
pyrus_communis	pycom03g05320 pycom11g05970
rosa_chinensis	RchiOBHm_Chr5g0070171
rosa_laevigata	RLG00000036117
rosa_multiflora	Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii	Rroxscaffold_1G00010950
rosa_rugosa	Rorug05G0403600
rosa_samantha	Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana	Rw5G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	576
AciI	CCGC	1 cut(s)	690
AclI	AACGTT	1 cut(s)	245
AclWI	GGATC	5 cut(s)	92, 123, 413, 518, 531
AcoI	YGGCCR	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	817
AfaI	GTAC	3 cut(s)	302, 313, 570
AfiI	CCNNNNNNNGG	3 cut(s)	520, 682, 875
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	7 cut(s)	11, 224, 266, 410, 497, 698, 929
AjiI	CACGTC	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	675, 868
AleI	CACNNNNGTG	1 cut(s)	803
AluBI	AGCT	6 cut(s)	6, 133, 148, 473, 894, 991
AluI	AGCT	6 cut(s)	6, 133, 148, 473, 894, 991
Alw21I	GWGCWC	3 cut(s)	645, 705, 725
Alw26I	GTCTC	1 cut(s)	380
Alw44I	GTGCAC	2 cut(s)	641, 721
AlwI	GGATC	5 cut(s)	92, 123, 413, 518, 531
AoxI	GGCC	6 cut(s)	51, 78, 276, 593, 691, 973
ApaI	GGGCCC	1 cut(s)	82
ApaLI	GTGCAC	2 cut(s)	641, 721
ApeKI	GCWGC	1 cut(s)	940
AspLEI	GCGC	1 cut(s)	843
AspS9I	GGNCC	3 cut(s)	78, 79, 277
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	829, 835
AsuII	TTCGAA	1 cut(s)	889
BaeGI	GKGCMC	3 cut(s)	82, 645, 725
BamHI	GGATCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	82
BauI	CACGAG	1 cut(s)	799
Bbv12I	GWGCWC	3 cut(s)	645, 705, 725
BbvI	GCAGC	1 cut(s)	952
BciT130I	CCWGG	2 cut(s)	677, 870
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	3 cut(s)	449, 470, 474
BisI	GCNGC	2 cut(s)	691, 941
BlsI	GCNGC	2 cut(s)	692, 942
Bme1390I	CCNGG	3 cut(s)	50, 677, 870
BmgBI	CACGTC	1 cut(s)	640
BmgT120I	GGNCC	3 cut(s)	78, 79, 277
BmiI	GGNNCC	4 cut(s)	79, 80, 159, 525
BmrFI	CCNGG	3 cut(s)	50, 677, 870
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	3 cut(s)	328, 475, 762
BmuI	ACTGGG	1 cut(s)	342
BpmI	CTGGAG	2 cut(s)	104, 335
Bpu14I	TTCGAA	1 cut(s)	889
BpuEI	CTTGAG	2 cut(s)	149, 173
BpuMI	CCSGG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	3 cut(s)	520, 682, 875
Bse1I	ACTGG	5 cut(s)	107, 121, 337, 565, 722
Bse3DI	GCAATG	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	677, 870
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	3 cut(s)	520, 682, 875
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	4 cut(s)	32, 108, 403, 506
BseNI	ACTGG	5 cut(s)	107, 121, 337, 565, 722
BseRI	GAGGAG	2 cut(s)	12, 170
BseSI	GKGCMC	3 cut(s)	82, 645, 725
BseXI	GCAGC	1 cut(s)	952
BsgI	GTGCAG	1 cut(s)	959
BshFI	GGCC	6 cut(s)	53, 80, 278, 595, 693, 975
BsiHKAI	GWGCWC	3 cut(s)	645, 705, 725
BsiSI	CCGG	2 cut(s)	50, 342
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	520, 682, 875
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	6 cut(s)	53, 80, 278, 595, 693, 975
Bso31I	GGTCTC	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	889
Bsp120I	GGGCCC	1 cut(s)	78
Bsp1286I	GDGCHC	4 cut(s)	82, 645, 705, 725
Bsp143I	GATC	5 cut(s)	57, 97, 115, 418, 523
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	6 cut(s)	53, 80, 278, 595, 693, 975
BspCNI	CTCAG	4 cut(s)	33, 107, 402, 507
BspLI	GGNNCC	4 cut(s)	79, 80, 159, 525
BspPI	GGATC	5 cut(s)	92, 123, 413, 518, 531
BspT104I	TTCGAA	1 cut(s)	889
BspTNI	GGTCTC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	176
BsrI	ACTGG	5 cut(s)	107, 121, 337, 565, 722
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	5 cut(s)	57, 97, 115, 418, 523
BssNAI	GTATAC	1 cut(s)	577
BssSI	CACGAG	1 cut(s)	799
Bst1107I	GTATAC	1 cut(s)	577
Bst2BI	CACGAG	1 cut(s)	799
Bst2UI	CCWGG	2 cut(s)	677, 870
Bst4CI	ACNGT	4 cut(s)	591, 653, 727, 920
BstBAI	YACGTR	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	889
BstC8I	GCNNGC	2 cut(s)	146, 777
BstDEI	CTNAG	5 cut(s)	41, 94, 389, 515, 992
BstDSI	CCRYGG	1 cut(s)	196
BstENI	CCTNNNNNAGG	1 cut(s)	873
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	843
BstKTI	GATC	5 cut(s)	60, 100, 118, 421, 526
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	5 cut(s)	57, 97, 115, 418, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	677, 870
BstSCI	CCNGG	3 cut(s)	48, 675, 868
BstSLI	GKGCMC	3 cut(s)	82, 645, 725
BstV1I	GCAGC	1 cut(s)	952
BstX2I	RGATCY	3 cut(s)	97, 115, 523
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstYI	RGATCY	3 cut(s)	97, 115, 523
BstZ17I	GTATAC	1 cut(s)	577
BsuRI	GGCC	6 cut(s)	53, 80, 278, 595, 693, 975
BtgI	CCRYGG	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	801
BtrI	CACGTC	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	8 cut(s)	128, 596, 645, 663, 715, 723, 886, 925
Cac8I	GCNNGC	2 cut(s)	146, 777
CfoI	GCGC	1 cut(s)	843
Cfr13I	GGNCC	3 cut(s)	78, 79, 277
Csp6I	GTAC	3 cut(s)	301, 312, 569
CviAII	CATG	1 cut(s)	627
CviQI	GTAC	3 cut(s)	301, 312, 569
DdeI	CTNAG	5 cut(s)	41, 94, 389, 515, 992
DpnI	GATC	5 cut(s)	59, 99, 117, 420, 525
DpnII	GATC	5 cut(s)	57, 97, 115, 418, 523
DraIII	CACNNNGTG	1 cut(s)	817
EaeI	YGGCCR	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	380
EcoNI	CCTNNNNNAGG	1 cut(s)	873
EcoO109I	RGGNCCY	3 cut(s)	78, 79, 277
EcoRII	CCWGG	2 cut(s)	675, 868
EcoT38I	GRGCYC	1 cut(s)	82
FaeI	CATG	1 cut(s)	630
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	626
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	2 cut(s)	691, 941
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	691, 941
FspBI	CTAG	3 cut(s)	449, 470, 474
GlaI	GCGC	1 cut(s)	842
GluI	GCNGC	2 cut(s)	691, 941
GsuI	CTGGAG	2 cut(s)	104, 335
HaeIII	GGCC	6 cut(s)	53, 80, 278, 595, 693, 975
HapII	CCGG	2 cut(s)	50, 342
HhaI	GCGC	1 cut(s)	843
Hin1II	CATG	1 cut(s)	630
Hin6I	GCGC	1 cut(s)	841
HinP1I	GCGC	1 cut(s)	841
HincII	GTYRAC	1 cut(s)	395
HindII	GTYRAC	1 cut(s)	395
HindIII	AAGCTT	2 cut(s)	146, 989
HinfI	GANTC	9 cut(s)	11, 92, 220, 266, 289, 517, 533, 554, 886
HpaII	CCGG	2 cut(s)	50, 342
HphI	GGTGA	2 cut(s)	829, 835
Hpy166II	GTNNAC	6 cut(s)	193, 395, 577, 643, 723, 826
Hpy188I	TCNGA	3 cut(s)	97, 330, 553
Hpy188III	TCNNGA	4 cut(s)	152, 206, 352, 521
Hpy8I	GTNNAC	6 cut(s)	193, 395, 577, 643, 723, 826
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	365, 491, 814, 869
HpyCH4III	ACNGT	4 cut(s)	591, 653, 727, 920
HpyCH4IV	ACGT	4 cut(s)	245, 381, 571, 639
HpyCH4V	TGCA	6 cut(s)	144, 626, 643, 723, 775, 940
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	5 cut(s)	41, 94, 389, 515, 992
HpySE526I	ACGT	4 cut(s)	245, 381, 571, 639
Hsp92II	CATG	1 cut(s)	630
HspAI	GCGC	1 cut(s)	841
Kzo9I	GATC	5 cut(s)	57, 97, 115, 418, 523
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	1 cut(s)	952
LweI	GCATC	3 cut(s)	328, 475, 762
MaeI	CTAG	3 cut(s)	449, 470, 474
MaeII	ACGT	4 cut(s)	245, 381, 571, 639
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	5 cut(s)	59, 99, 117, 420, 525
MboI	GATC	5 cut(s)	57, 97, 115, 418, 523
MboII	GAAGA	1 cut(s)	464
MflI	RGATCY	3 cut(s)	97, 115, 523
MhlI	GDGCHC	4 cut(s)	82, 645, 705, 725
MluCI	AATT	1 cut(s)	477
MlyI	GAGTC	3 cut(s)	86, 526, 527
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	30, 33, 92, 98, 148, 396, 411, 676
MseI	TTAA	1 cut(s)	987
MslI	CAYNNNNRTG	1 cut(s)	803
MspI	CCGG	2 cut(s)	50, 342
MspR9I	CCNGG	3 cut(s)	50, 677, 870
MvaI	CCWGG	2 cut(s)	677, 870
MwoI	GCNNNNNNNGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	5 cut(s)	57, 97, 115, 418, 523
NlaIII	CATG	1 cut(s)	630
NlaIV	GGNNCC	4 cut(s)	79, 80, 159, 525
NmuCI	GTSAC	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	889
OliI	CACNNNNGTG	1 cut(s)	803
PcsI	WCGNNNNNNNCGW	1 cut(s)	577
PfeI	GAWTC	6 cut(s)	11, 220, 266, 289, 554, 886
PkrI	GCNGC	2 cut(s)	692, 942
PleI	GAGTC	3 cut(s)	86, 525, 527
PpsI	GAGTC	3 cut(s)	86, 525, 527
Ppu21I	YACGTR	1 cut(s)	572
Psp1406I	AACGTT	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	675, 868
PspGI	CCWGG	2 cut(s)	675, 868
PspN4I	GGNNCC	4 cut(s)	79, 80, 159, 525
PspOMI	GGGCCC	1 cut(s)	78
PspPI	GGNCC	3 cut(s)	78, 79, 277
PsuI	RGATCY	3 cut(s)	97, 115, 523
RsaI	GTAC	3 cut(s)	302, 313, 570
RsaNI	GTAC	3 cut(s)	301, 312, 569
RseI	CAYNNNNRTG	1 cut(s)	803
SaqAI	TTAA	1 cut(s)	987
SatI	GCNGC	2 cut(s)	691, 941
Sau3AI	GATC	5 cut(s)	57, 97, 115, 418, 523
Sau96I	GGNCC	3 cut(s)	78, 79, 277
SchI	GAGTC	3 cut(s)	86, 526, 527
ScrFI	CCNGG	3 cut(s)	50, 677, 870
SduI	GDGCHC	4 cut(s)	82, 645, 705, 725
SfaNI	GCATC	3 cut(s)	328, 475, 762
SfuI	TTCGAA	1 cut(s)	889
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	2 cut(s)	128, 152
SmoI	CTYRAG	2 cut(s)	128, 152
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	1 cut(s)	690
SspMI	CTAG	3 cut(s)	449, 470, 474
StyD4I	CCNGG	3 cut(s)	48, 675, 868
TaaI	ACNGT	4 cut(s)	591, 653, 727, 920
TaiI	ACGT	4 cut(s)	248, 384, 574, 642
TaqI	TCGA	7 cut(s)	63, 84, 90, 369, 403, 889, 896
TasI	AATT	1 cut(s)	477
TauI	GCSGC	1 cut(s)	693
TfiI	GAWTC	6 cut(s)	11, 220, 266, 289, 554, 886
Tru1I	TTAA	1 cut(s)	987
Tru9I	TTAA	1 cut(s)	987
TscAI	CASTG	8 cut(s)	128, 596, 652, 663, 722, 730, 886, 925
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	1 cut(s)	940
Tsp45I	GTSAC	1 cut(s)	530
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	8 cut(s)	128, 596, 652, 663, 722, 730, 886, 925
VneI	GTGCAC	2 cut(s)	641, 721
XagI	CCTNNNNNAGG	1 cut(s)	873
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	576
XspI	CTAG	3 cut(s)	449, 470, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.