Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013014.1

Orthogroup ID

OG0012155

Physical Location & Seq

Genomic Coordinates Reverse (-)

14004 .. 17117

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013014.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atgagcttcgaatcttaccctcctccatttcgcaacctactccaaccgccactgagcagcccggcccagatcctcgattcgggatggggtgcccttaactcggatcctatacccgtcgtggatcttcagtgccttgagcttggggactgcaagcttcttgaggagccttgtaagcaatggggactttttcgtttggtcaaccacggagttcctgaaagtcttttgagtcaagcacaggactatgccagagcgcttttttctcttacctttgaatccaaacaggcccttattactagccctctgtcttacttctggggtacccctgcccttagtccaactggggcggcgttatcggccgaaaaactccagaatatcaatttggtcgaaggtctcaacgtccctctgagtcaactgcctcgatttcaaactgacgatcctagaattgcttctttctgccatgtgctagaagaatatgggaggcatctagctagaattggcagaaccctatttaaaggtatgtccacgagcctgagtttggatccaattgaatacgagtcaaatttatcagaatctactggtttagtacgtgtataccgatacccacattggccttcgaaatataagaaagaaaacaagtctgcatggggaatggacgtgcacactgacagttccgtgctgtccatactgaaccaggacgaggtcggtggccttgaagtgctcaaagacaatcagtggttcactgtgaaacccattcccaacacactggtcgtcaatcttggagatatgatgcaggcgataagcgatgatgaatacacaagtgtgaaacacagggtaaaggtgaacgaatacagagagcgcatttcaatttgctactttgtgtttcctggcgaaaacagtgtgattcgaagctcaaactacaagccttttacttacagggattttcaagaacaagtgcagaaagacataaagactgttggctataaggtcaccggcagccggattccggccaactattgcctgattccggtcaccggccgttggaacaggttaacgacagtcgaaatccgttcaccagttgctgtctaccgaacttctccgaaaacttcgccggaagtccctaaagaggtcaccggaaaggtttattgccctaaacagatttgtattgccccccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

391

Amino Acids

44.09

Weight (kDa)

7.0

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58660 AT5G58660
fragaria_vesca	FvH4_3g38920
malus_domestica	MD03G1066600.v1.1 MD11G1071600.v1.1
prunus_persica	Prupe.6G055300_v2.0.a1
pyrus_communis	pycom03g05320 pycom11g05970
rosa_chinensis	RchiOBHm_Chr5g0070171
rosa_laevigata	RLG00000036117
rosa_multiflora	Rmu_sc0013014.1_g000007 Rmu_sc0018909.1_g000006
rosa_roxburghii	Rroxscaffold_1G00010950
rosa_rugosa	Rorug05G0403600
rosa_samantha	Rh5AG459500 Rh5BG478000 Rh5CG501900 Rh5DG489900
rosa_wichuraiana	Rw5G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	2 cut(s)	89, 317
AccI	GTMKAC	2 cut(s)	591, 1083
AciI	CCGC	2 cut(s)	47, 344
AclWI	GGATC	7 cut(s)	64, 98, 111, 129, 428, 533, 546
AcoI	YGGCCR	3 cut(s)	354, 1005, 1033
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	319, 585
AfeI	AGCGCT	1 cut(s)	252
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	6 cut(s)	272, 425, 548, 713, 864, 944
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	690, 883
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AleI	CACNNNNGTG	1 cut(s)	818
AluBI	AGCT	5 cut(s)	6, 139, 154, 488, 909
AluI	AGCT	5 cut(s)	6, 139, 154, 488, 909
Alw21I	GWGCWC	2 cut(s)	660, 720
Alw26I	GTCTC	1 cut(s)	395
Alw44I	GTGCAC	1 cut(s)	656
AlwI	GGATC	7 cut(s)	64, 98, 111, 129, 428, 533, 546
AlwNI	CAGNNNCTG	1 cut(s)	1079
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	7 cut(s)	63, 282, 354, 608, 706, 1005, 1033
ApaLI	GTGCAC	1 cut(s)	656
ApeKI	GCWGC	2 cut(s)	57, 993
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	1 cut(s)	445
Asp718I	GGTACC	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	253, 858
AspS9I	GGNCC	2 cut(s)	64, 283
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	5 cut(s)	850, 979, 1021, 1062, 1120
AsuII	TTCGAA	3 cut(s)	9, 614, 904
BaeGI	GKGCMC	2 cut(s)	94, 660
BamHI	GGATCC	2 cut(s)	103, 538
BanI	GGYRCC	2 cut(s)	89, 317
BauI	CACGAG	1 cut(s)	523
Bbv12I	GWGCWC	2 cut(s)	660, 720
BbvI	GCAGC	2 cut(s)	69, 1005
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	1 cut(s)	1020
BciT130I	CCWGG	2 cut(s)	692, 885
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	5 cut(s)	294, 438, 464, 485, 489
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	3 cut(s)	58, 345, 994
BlsI	GCNGC	3 cut(s)	59, 346, 995
Bme1390I	CCNGG	3 cut(s)	62, 692, 885
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	64, 283
BmiI	GGNNCC	5 cut(s)	91, 105, 165, 319, 540
BmrFI	CCNGG	3 cut(s)	62, 692, 885
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	2 cut(s)	490, 777
BmuI	ACTGGG	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	350
Bpu14I	TTCGAA	3 cut(s)	9, 614, 904
BpuEI	CTTGAG	2 cut(s)	155, 179
BpuMI	CCSGG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	2 cut(s)	1024, 1130
Bse118I	RCCGGY	2 cut(s)	989, 1031
Bse1I	ACTGG	4 cut(s)	343, 580, 768, 1073
Bse3DI	GCAATG	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	692, 885
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	3 cut(s)	44, 395, 521
BseNI	ACTGG	4 cut(s)	343, 580, 768, 1073
BseRI	GAGGAG	2 cut(s)	12, 176
BseSI	GKGCMC	2 cut(s)	94, 660
BseX3I	CGGCCG	2 cut(s)	354, 1033
BseXI	GCAGC	2 cut(s)	69, 1005
BsgI	GTGCAG	1 cut(s)	974
Bsh1285I	CGRYCG	2 cut(s)	357, 1036
BshFI	GGCC	7 cut(s)	65, 284, 356, 610, 708, 1007, 1035
BshNI	GGYRCC	2 cut(s)	89, 317
BsiEI	CGRYCG	2 cut(s)	357, 1036
BsiHKAI	GWGCWC	2 cut(s)	660, 720
BsiSI	CCGG	8 cut(s)	62, 990, 997, 1004, 1025, 1032, 1109, 1131
BslFI	GGGAC	4 cut(s)	158, 195, 383, 1100
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	4 cut(s)	158, 195, 383, 1100
BsnI	GGCC	7 cut(s)	65, 284, 356, 610, 708, 1007, 1035
Bso31I	GGTCTC	1 cut(s)	395
Bsp119I	TTCGAA	3 cut(s)	9, 614, 904
Bsp1286I	GDGCHC	3 cut(s)	94, 660, 720
Bsp143I	GATC	5 cut(s)	69, 103, 121, 433, 538
BspACI	CCGC	2 cut(s)	47, 344
BspANI	GGCC	7 cut(s)	65, 284, 356, 610, 708, 1007, 1035
BspCNI	CTCAG	3 cut(s)	45, 396, 522
BspLI	GGNNCC	5 cut(s)	91, 105, 165, 319, 540
BspPI	GGATC	7 cut(s)	64, 98, 111, 129, 428, 533, 546
BspT104I	TTCGAA	3 cut(s)	9, 614, 904
BspT107I	GGYRCC	2 cut(s)	89, 317
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	182
BsrFI	RCCGGY	2 cut(s)	989, 1031
BsrI	ACTGG	4 cut(s)	343, 580, 768, 1073
BssAI	RCCGGY	2 cut(s)	989, 1031
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	5 cut(s)	69, 103, 121, 433, 538
BssNAI	GTATAC	1 cut(s)	592
BssSI	CACGAG	1 cut(s)	523
Bst1107I	GTATAC	1 cut(s)	592
Bst2BI	CACGAG	1 cut(s)	523
Bst2UI	CCWGG	2 cut(s)	692, 885
Bst4CI	ACNGT	5 cut(s)	668, 742, 896, 973, 1057
BstBAI	YACGTR	1 cut(s)	587
BstBI	TTCGAA	3 cut(s)	9, 614, 904
BstC8I	GCNNGC	2 cut(s)	152, 792
BstDEI	CTNAG	4 cut(s)	53, 329, 404, 530
BstDSI	CCRYGG	1 cut(s)	202
BstEII	GGTNACC	3 cut(s)	985, 1027, 1126
BstF5I	GGATG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 858
BstKTI	GATC	5 cut(s)	72, 106, 124, 436, 541
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	5 cut(s)	69, 103, 121, 433, 538
BstMCI	CGRYCG	2 cut(s)	357, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 353
BstNI	CCWGG	2 cut(s)	692, 885
BstPI	GGTNACC	3 cut(s)	985, 1027, 1126
BstSCI	CCNGG	3 cut(s)	60, 690, 883
BstSLI	GKGCMC	2 cut(s)	94, 660
BstV1I	GCAGC	2 cut(s)	69, 1005
BstX2I	RGATCY	4 cut(s)	69, 103, 121, 538
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	4 cut(s)	69, 103, 121, 538
BstZ17I	GTATAC	1 cut(s)	592
BstZI	CGGCCG	2 cut(s)	354, 1033
BsuRI	GGCC	7 cut(s)	65, 284, 356, 610, 708, 1007, 1035
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	816
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	7 cut(s)	50, 134, 660, 737, 738, 761, 901
Cac8I	GCNNGC	2 cut(s)	152, 792
CaiI	CAGNNNCTG	1 cut(s)	1079
CfoI	GCGC	2 cut(s)	253, 858
Cfr10I	RCCGGY	2 cut(s)	989, 1031
Cfr13I	GGNCC	2 cut(s)	64, 283
Csp6I	GTAC	2 cut(s)	318, 584
CviAII	CATG	2 cut(s)	458, 642
CviQI	GTAC	2 cut(s)	318, 584
DdeI	CTNAG	4 cut(s)	53, 329, 404, 530
DpnI	GATC	5 cut(s)	71, 105, 123, 435, 540
DpnII	GATC	5 cut(s)	69, 103, 121, 433, 538
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	3 cut(s)	354, 1005, 1033
EagI	CGGCCG	2 cut(s)	354, 1033
EclXI	CGGCCG	2 cut(s)	354, 1033
Eco31I	GGTCTC	1 cut(s)	395
Eco47III	AGCGCT	1 cut(s)	252
Eco52I	CGGCCG	2 cut(s)	354, 1033
Eco57I	CTGAAG	1 cut(s)	110
Eco91I	GGTNACC	3 cut(s)	985, 1027, 1126
EcoO109I	RGGNCCY	1 cut(s)	283
EcoO65I	GGTNACC	3 cut(s)	985, 1027, 1126
EcoRII	CCWGG	2 cut(s)	690, 883
FaeI	CATG	2 cut(s)	461, 645
FaqI	GGGAC	4 cut(s)	158, 195, 383, 1100
FatI	CATG	2 cut(s)	457, 641
FblI	GTMKAC	2 cut(s)	591, 1083
Fnu4HI	GCNGC	3 cut(s)	58, 345, 994
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	58, 345, 994
FspBI	CTAG	5 cut(s)	294, 438, 464, 485, 489
GlaI	GCGC	2 cut(s)	252, 857
GluI	GCNGC	3 cut(s)	58, 345, 994
GsuI	CTGGAG	1 cut(s)	350
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	7 cut(s)	65, 284, 356, 610, 708, 1007, 1035
HapII	CCGG	8 cut(s)	62, 990, 997, 1004, 1025, 1032, 1109, 1131
HhaI	GCGC	2 cut(s)	253, 858
Hin1II	CATG	2 cut(s)	461, 645
Hin6I	GCGC	2 cut(s)	251, 856
HinP1I	GCGC	2 cut(s)	251, 856
HincII	GTYRAC	3 cut(s)	199, 410, 1050
HindII	GTYRAC	3 cut(s)	199, 410, 1050
HindIII	AAGCTT	1 cut(s)	152
HpaI	GTTAAC	1 cut(s)	1050
HpaII	CCGG	8 cut(s)	62, 990, 997, 1004, 1025, 1032, 1109, 1131
HphI	GGTGA	5 cut(s)	850, 979, 1021, 1062, 1120
Hpy188I	TCNGA	4 cut(s)	103, 405, 568, 1098
Hpy188III	TCNNGA	5 cut(s)	81, 158, 212, 367, 944
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	380, 621
HpyCH4III	ACNGT	5 cut(s)	668, 742, 896, 973, 1057
HpyCH4IV	ACGT	3 cut(s)	396, 586, 654
HpyCH4V	TGCA	5 cut(s)	150, 641, 658, 790, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 353
HpyF3I	CTNAG	4 cut(s)	53, 329, 404, 530
HpySE526I	ACGT	3 cut(s)	396, 586, 654
Hsp92II	CATG	2 cut(s)	461, 645
HspAI	GCGC	2 cut(s)	251, 856
KpnI	GGTACC	1 cut(s)	321
KspAI	GTTAAC	1 cut(s)	1050
Kzo9I	GATC	5 cut(s)	69, 103, 121, 433, 538
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	2 cut(s)	69, 1005
LweI	GCATC	2 cut(s)	490, 777
MaeI	CTAG	5 cut(s)	294, 438, 464, 485, 489
MaeII	ACGT	3 cut(s)	396, 586, 654
MaeIII	GTNAC	3 cut(s)	985, 1027, 1126
MalI	GATC	5 cut(s)	71, 105, 123, 435, 540
MboI	GATC	5 cut(s)	69, 103, 121, 433, 538
MboII	GAAGA	2 cut(s)	116, 479
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	4 cut(s)	69, 103, 121, 538
MhlI	GDGCHC	3 cut(s)	94, 660, 720
MluCI	AATT	6 cut(s)	376, 441, 492, 543, 559, 864
MlyI	GAGTC	3 cut(s)	235, 415, 563
MmeI	TCCRAC	3 cut(s)	67, 359, 1019
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	3 cut(s)	96, 510, 1049
MslI	CAYNNNNRTG	1 cut(s)	818
MspI	CCGG	8 cut(s)	62, 990, 997, 1004, 1025, 1032, 1109, 1131
MspR9I	CCNGG	3 cut(s)	62, 692, 885
MunI	CAATTG	1 cut(s)	543
MvaI	CCWGG	2 cut(s)	692, 885
MwoI	GCNNNNNNNGC	2 cut(s)	172, 353
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	5 cut(s)	69, 103, 121, 433, 538
NlaIII	CATG	2 cut(s)	461, 645
NlaIV	GGNNCC	5 cut(s)	91, 105, 165, 319, 540
NmuCI	GTSAC	3 cut(s)	985, 1027, 1126
NspV	TTCGAA	3 cut(s)	9, 614, 904
OliI	CACNNNNGTG	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	7 cut(s)	11, 77, 272, 569, 901, 1000, 1021
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	3 cut(s)	59, 346, 995
PleI	GAGTC	3 cut(s)	234, 414, 562
PpsI	GAGTC	3 cut(s)	234, 414, 562
Ppu21I	YACGTR	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	690, 883
PspEI	GGTNACC	3 cut(s)	985, 1027, 1126
PspGI	CCWGG	2 cut(s)	690, 883
PspN4I	GGNNCC	5 cut(s)	91, 105, 165, 319, 540
PspPI	GGNCC	2 cut(s)	64, 283
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	4 cut(s)	69, 103, 121, 538
PsyI	GACNNNGTC	1 cut(s)	698
RsaI	GTAC	2 cut(s)	319, 585
RsaNI	GTAC	2 cut(s)	318, 584
RseI	CAYNNNNRTG	1 cut(s)	818
SaqAI	TTAA	3 cut(s)	96, 510, 1049
SatI	GCNGC	3 cut(s)	58, 345, 994
Sau3AI	GATC	5 cut(s)	69, 103, 121, 433, 538
Sau96I	GGNCC	2 cut(s)	64, 283
SchI	GAGTC	3 cut(s)	235, 415, 563
ScrFI	CCNGG	3 cut(s)	62, 692, 885
SduI	GDGCHC	3 cut(s)	94, 660, 720
SfaNI	GCATC	2 cut(s)	490, 777
SfuI	TTCGAA	3 cut(s)	9, 614, 904
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	2 cut(s)	134, 158
SmoI	CTYRAG	2 cut(s)	134, 158
Sse9I	AATT	6 cut(s)	376, 441, 492, 543, 559, 864
SsiI	CCGC	2 cut(s)	47, 344
SspMI	CTAG	5 cut(s)	294, 438, 464, 485, 489
StyD4I	CCNGG	3 cut(s)	60, 690, 883
TaaI	ACNGT	5 cut(s)	668, 742, 896, 973, 1057
TaiI	ACGT	3 cut(s)	399, 589, 657
TaqI	TCGA	7 cut(s)	9, 75, 384, 418, 614, 904, 1059
TasI	AATT	6 cut(s)	376, 441, 492, 543, 559, 864
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	7 cut(s)	11, 77, 272, 569, 901, 1000, 1021
Tru1I	TTAA	3 cut(s)	96, 510, 1049
Tru9I	TTAA	3 cut(s)	96, 510, 1049
TscAI	CASTG	7 cut(s)	57, 134, 667, 737, 745, 768, 901
TseFI	GTSAC	3 cut(s)	985, 1027, 1126
TseI	GCWGC	2 cut(s)	57, 993
Tsp45I	GTSAC	3 cut(s)	985, 1027, 1126
TspDTI	ATGAA	1 cut(s)	822
TspGWI	ACGGA	3 cut(s)	219, 661, 1055
TspRI	CASTG	7 cut(s)	57, 134, 667, 737, 745, 768, 901
Tth111I	GACNNNGTC	1 cut(s)	698
VneI	GTGCAC	1 cut(s)	656
XapI	RAATTY	1 cut(s)	559
XmiI	GTMKAC	2 cut(s)	591, 1083
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	5 cut(s)	294, 438, 464, 485, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.