Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Forward (+)

23797446 .. 23800954

Gene Structure 3509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGCCAATGAGGAGCAAAACCCCAACGCCTCTCCGCTTCTCAAATGGAAAGCATCAGAGAGATGATTCTGAGTATAGTTGGACTGATGTAGGTACTGGGGAGAAGGCCAGGAATGTCTCCGTCCTCGGTGCGATCAGAAGGGCAGCTAAGAAAGTCTTTGTTATTATTTTCTTAGGACAACGGAAGTTAAAGCCAACAGAATGTAGATCTGATCCTGGAGAGAGCAGCACGCACGACAGAGAATCTACATTATCAGGCTGGACTGGTTATTCATCACCAAGCTCCTTTGGAAGGTCAACAGAAAGAAAGGTTTCAGGTCAATATCGTTTTTCTGGTTCAAGATTTCAAAGTCCTGGGAAAGATTCTTCTTCTAGCAAAAGTTGGCATCAAGGCCCGGTAATATTTTCTTTTGGGGAGCTTCAAAGGGCAACCGCAAATTTTTCTTCGGTTCATCAAATTGGGGAAGGCGGTTTTGGAACTGTTTTTAAGGGAAAACTTGATGATGGAACTATTGTTGCTATCAAGCGTGCGAGAAAGAACAACTATGGCAAAAGCTGGTTGCTAGAGTTCAAGAATGAAATATACACATTGTCAAAGATTGAGCATATGAATTTGGTAAAGCTGTATGGATTTCTTGAACATGGAGATGAAAAGGTTATTGTTGTTGAATATGTTGCCAATGGAAACCTACGAGAACATCTAGATGGTTTAAGGGGTAACCGCCTTGAAATGGCAGAACGTCTTGAGATTGCAATTGATGTGGCTCATGCATTGACCTATTTGCACACATATACTGATAGTCCAATAATCCACAGAGACATTAAAGCATCAAATATCCTCATCACGAATAAGCTTAGAGCCAAAGTGGCGGACTTTGGCTTTGCTCGTTTAGTGTCGGAAGATCTTGGGGCTACTCATATATCGACTCAGGTCAAAGGATCTGCAGGCTATGTGGATCCAGATTACCTCAGGACGTTTCAACTAACTGACAAGAGCGACGTTTACTCTTTTGGTGTTTTGCTCGTAGAGATTCTCACTGGAAGACGTCCCATTGAGTTAAAGAGACCACGAAAAGACAGACTCACGGTTAAATGGGCATTGAGGAGACTCAAAGACGATGAAGCTGTTCTCATAATGGACCCATTTCTCAAGAGAAACCGAGCCGCCATTGAAGTGGCTGAGAAGATGCTGAGACTTGCGAGCGAATGTGTTACCCCGACGAGAGCTACACGTCCAGCTATGAAAGGCATTGCGGAAAAGCTATGGGCTATAAGGAGAGAGATGAAGGAGACGATGATATGTTCATCTGCATCTAATTCTTCTTGTTCTTCAACAACACATAGCTTCATTGGTCGTGATTCAGACAGATATGCATTGCCGAGGATTGAAGATAACGAGAATAGCATTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

470

Amino Acids

52.88

Weight (kDa)

9.58

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	148 - 422	1.3e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	150 - 421	2.2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1048
AciI	CCGC	7 cut(s)	34, 432, 468, 721, 869, 1164, 1253
AclWI	GGATC	4 cut(s)	206, 946, 950, 963
AcsI	RAATTY	2 cut(s)	436, 610
AcyI	GRCGYC	1 cut(s)	1045
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	291, 730
AflIII	ACRYGT	1 cut(s)	1229
AjiI	CACGTC	1 cut(s)	1232
AjnI	CCWGG	3 cut(s)	107, 214, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
Alw26I	GTCTC	6 cut(s)	121, 810, 1057, 1099, 1186, 1283
AlwI	GGATC	4 cut(s)	206, 946, 950, 963
AoxI	GGCC	2 cut(s)	105, 391
ApeKI	GCWGC	2 cut(s)	143, 225
ApoI	RAATTY	2 cut(s)	436, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
Asp700I	GAANNNNTTC	2 cut(s)	310, 1125
AspS9I	GGNCC	2 cut(s)	392, 1138
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	1138
AxyI	CCTNAGG	1 cut(s)	968
BamHI	GGATCC	1 cut(s)	955
BbsI	GAAGAC	1 cut(s)	1048
BbvI	GCAGC	2 cut(s)	155, 237
BccI	CCATC	2 cut(s)	497, 698
BciT130I	CCWGG	3 cut(s)	109, 216, 354
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	6 cut(s)	121, 810, 1057, 1099, 1186, 1283
BfaI	CTAG	3 cut(s)	372, 563, 701
BfmI	CTRYAG	1 cut(s)	942
BglI	GCCNNNNNGGC	1 cut(s)	866
BglII	AGATCT	2 cut(s)	206, 901
BisI	GCNGC	3 cut(s)	144, 226, 1164
BlsI	GCNGC	3 cut(s)	145, 227, 1165
Bme1390I	CCNGG	4 cut(s)	109, 216, 354, 395
Bme18I	GGWCC	1 cut(s)	1138
BmgBI	CACGTC	1 cut(s)	1232
BmgT120I	GGNCC	2 cut(s)	392, 1138
BmiI	GGNNCC	2 cut(s)	957, 1140
BmrFI	CCNGG	4 cut(s)	109, 216, 354, 395
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	5 cut(s)	61, 394, 836, 1176, 1319
BmuI	ACTGGG	1 cut(s)	105
BoxI	GACNNNNGTC	1 cut(s)	929
BpiI	GAAGAC	1 cut(s)	1048
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	764, 1133
BpuMI	CCSGG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	1045
BsaI	GGTCTC	1 cut(s)	1057
BsaJI	CCNNGG	3 cut(s)	124, 353, 1379
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 730
Bse1I	ACTGG	3 cut(s)	100, 268, 1042
Bse21I	CCTNAGG	1 cut(s)	968
Bse3DI	GCAATG	2 cut(s)	1248, 1373
BseBI	CCWGG	3 cut(s)	109, 216, 354
BseDI	CCNNGG	3 cut(s)	124, 353, 1379
BseLI	CCNNNNNNNGG	2 cut(s)	291, 730
BseMI	GCAATG	2 cut(s)	1248, 1373
BseMII	CTCAG	5 cut(s)	60, 941, 982, 1170, 1181
BseNI	ACTGG	3 cut(s)	100, 268, 1042
BseRI	GAGGAG	2 cut(s)	25, 1117
BseXI	GCAGC	2 cut(s)	155, 237
BshFI	GGCC	2 cut(s)	107, 393
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	1032
BslI	CCNNNNNNNGG	2 cut(s)	291, 730
BsmAI	GTCTC	6 cut(s)	121, 810, 1057, 1099, 1186, 1283
BsmBI	CGTCTC	1 cut(s)	1283
BsmFI	GGGAC	1 cut(s)	1032
BsnI	GGCC	2 cut(s)	107, 393
Bso31I	GGTCTC	1 cut(s)	1057
Bsp143I	GATC	6 cut(s)	132, 206, 211, 901, 938, 955
BspACI	CCGC	7 cut(s)	34, 432, 468, 721, 869, 1164, 1253
BspANI	GGCC	2 cut(s)	107, 393
BspCNI	CTCAG	5 cut(s)	61, 940, 981, 1171, 1182
BspLI	GGNNCC	2 cut(s)	957, 1140
BspMAI	CTGCAG	1 cut(s)	946
BspPI	GGATC	4 cut(s)	206, 946, 950, 963
BspTNI	GGTCTC	1 cut(s)	1057
BsrDI	GCAATG	2 cut(s)	1248, 1373
BsrI	ACTGG	3 cut(s)	100, 268, 1042
BssECI	CCNNGG	3 cut(s)	124, 353, 1379
BssMI	GATC	6 cut(s)	132, 206, 211, 901, 938, 955
BssNI	GRCGYC	1 cut(s)	1045
Bst2UI	CCWGG	3 cut(s)	109, 216, 354
Bst4CI	ACNGT	2 cut(s)	481, 1087
BstACI	GRCGYC	1 cut(s)	1045
BstC8I	GCNNGC	4 cut(s)	230, 528, 946, 1201
BstDEI	CTNAG	8 cut(s)	69, 147, 172, 854, 927, 968, 1179, 1190
BstEII	GGTNACC	1 cut(s)	716
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstKTI	GATC	6 cut(s)	135, 209, 214, 904, 941, 958
BstMAI	GTCTC	6 cut(s)	121, 810, 1057, 1099, 1186, 1283
BstMBI	GATC	6 cut(s)	132, 206, 211, 901, 938, 955
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstNI	CCWGG	3 cut(s)	109, 216, 354
BstPAI	GACNNNNGTC	1 cut(s)	929
BstPI	GGTNACC	1 cut(s)	716
BstSCI	CCNGG	4 cut(s)	107, 214, 352, 393
BstSFI	CTRYAG	1 cut(s)	942
BstV1I	GCAGC	2 cut(s)	155, 237
BstV2I	GAAGAC	1 cut(s)	1048
BstX2I	RGATCY	4 cut(s)	206, 901, 938, 955
BstXI	CCANNNNNNTGG	1 cut(s)	1174
BstYI	RGATCY	4 cut(s)	206, 901, 938, 955
Bsu36I	CCTNAGG	1 cut(s)	968
BsuRI	GGCC	2 cut(s)	107, 393
BtrI	CACGTC	1 cut(s)	1232
BtsIMutI	CAGTG	1 cut(s)	1035
Cac8I	GCNNGC	4 cut(s)	230, 528, 946, 1201
Cfr13I	GGNCC	2 cut(s)	392, 1138
Csp6I	GTAC	1 cut(s)	93
CspCI	CAANNNNNGTGG	2 cut(s)	741, 776
CviAII	CATG	2 cut(s)	641, 767
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	8 cut(s)	69, 147, 172, 854, 927, 968, 1179, 1190
DpnI	GATC	6 cut(s)	134, 208, 213, 903, 940, 957
DpnII	GATC	6 cut(s)	132, 206, 211, 901, 938, 955
EciI	GGCGGA	1 cut(s)	884
Eco31I	GGTCTC	1 cut(s)	1057
Eco47I	GGWCC	1 cut(s)	1138
Eco81I	CCTNAGG	1 cut(s)	968
Eco91I	GGTNACC	1 cut(s)	716
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	716
EcoRII	CCWGG	3 cut(s)	107, 214, 352
EcoT22I	ATGCAT	2 cut(s)	772, 1375
Esp3I	CGTCTC	1 cut(s)	1283
FaeI	CATG	2 cut(s)	644, 770
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	1032
FatI	CATG	2 cut(s)	640, 766
FauNDI	CATATG	1 cut(s)	606
Fnu4HI	GCNGC	3 cut(s)	144, 226, 1164
Fsp4HI	GCNGC	3 cut(s)	144, 226, 1164
FspBI	CTAG	3 cut(s)	372, 563, 701
GluI	GCNGC	3 cut(s)	144, 226, 1164
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	107, 393
HapII	CCGG	1 cut(s)	395
Hin1I	GRCGYC	1 cut(s)	1045
Hin1II	CATG	2 cut(s)	644, 770
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	8 cut(s)	65, 242, 362, 925, 1030, 1080, 1107, 1358
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	267
Hpy166II	GTNNAC	2 cut(s)	297, 1003
Hpy188I	TCNGA	6 cut(s)	57, 70, 137, 211, 898, 1363
Hpy8I	GTNNAC	2 cut(s)	297, 1003
Hpy99I	CGWCG	2 cut(s)	1001, 1222
HpyAV	CCTTC	5 cut(s)	97, 132, 285, 458, 1279
HpyCH4III	ACNGT	2 cut(s)	481, 1087
HpyCH4IV	ACGT	5 cut(s)	739, 974, 999, 1045, 1231
HpyCH4V	TGCA	6 cut(s)	752, 770, 784, 944, 1310, 1373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	8 cut(s)	69, 147, 172, 854, 927, 968, 1179, 1190
HpySE526I	ACGT	5 cut(s)	739, 974, 999, 1045, 1231
Hsp92I	GRCGYC	1 cut(s)	1045
Hsp92II	CATG	2 cut(s)	644, 770
Kzo9I	GATC	6 cut(s)	132, 206, 211, 901, 938, 955
LmnI	GCTCC	3 cut(s)	12, 287, 415
Lsp1109I	GCAGC	2 cut(s)	155, 237
LweI	GCATC	5 cut(s)	61, 394, 836, 1176, 1319
MaeI	CTAG	3 cut(s)	372, 563, 701
MaeII	ACGT	5 cut(s)	739, 974, 999, 1045, 1231
MaeIII	GTNAC	2 cut(s)	716, 1210
MalI	GATC	6 cut(s)	134, 208, 213, 903, 940, 957
MboI	GATC	6 cut(s)	132, 206, 211, 901, 938, 955
MboII	GAAGA	9 cut(s)	357, 360, 435, 911, 1053, 1195, 1311, 1320, 1400
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	4 cut(s)	206, 901, 938, 955
MluCI	AATT	5 cut(s)	436, 456, 610, 753, 1315
MlyI	GAGTC	3 cut(s)	919, 1074, 1101
MmeI	TCCRAC	2 cut(s)	59, 876
MnlI	CCTC	7 cut(s)	3, 39, 134, 848, 977, 1095, 1374
Mph1103I	ATGCAT	2 cut(s)	772, 1375
MroXI	GAANNNNTTC	2 cut(s)	310, 1125
MseI	TTAA	6 cut(s)	188, 486, 710, 822, 1058, 1089
MslI	CAYNNNNRTG	3 cut(s)	645, 702, 1172
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	4 cut(s)	109, 216, 354, 395
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	3 cut(s)	109, 216, 354
MwoI	GCNNNNNNNGC	1 cut(s)	866
NciI	CCSGG	1 cut(s)	395
NdeI	CATATG	1 cut(s)	606
NdeII	GATC	6 cut(s)	132, 206, 211, 901, 938, 955
NlaIII	CATG	2 cut(s)	644, 770
NlaIV	GGNNCC	2 cut(s)	957, 1140
NmeAIII	GCCGAG	1 cut(s)	1404
NsiI	ATGCAT	2 cut(s)	772, 1375
PdmI	GAANNNNTTC	2 cut(s)	310, 1125
PfeI	GAWTC	5 cut(s)	65, 242, 362, 1030, 1358
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	145, 227, 1165
PleI	GAGTC	3 cut(s)	919, 1074, 1101
PpsI	GAGTC	3 cut(s)	919, 1074, 1101
PshAI	GACNNNNGTC	1 cut(s)	929
Psp6I	CCWGG	3 cut(s)	107, 214, 352
PspEI	GGTNACC	1 cut(s)	716
PspGI	CCWGG	3 cut(s)	107, 214, 352
PspN4I	GGNNCC	2 cut(s)	957, 1140
PspPI	GGNCC	2 cut(s)	392, 1138
PstI	CTGCAG	1 cut(s)	946
PsuI	RGATCY	4 cut(s)	206, 901, 938, 955
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	3 cut(s)	645, 702, 1172
SaqAI	TTAA	6 cut(s)	188, 486, 710, 822, 1058, 1089
SatI	GCNGC	3 cut(s)	144, 226, 1164
Sau3AI	GATC	6 cut(s)	132, 206, 211, 901, 938, 955
Sau96I	GGNCC	2 cut(s)	392, 1138
SchI	GAGTC	3 cut(s)	919, 1074, 1101
ScrFI	CCNGG	4 cut(s)	109, 216, 354, 395
SfaNI	GCATC	5 cut(s)	61, 394, 836, 1176, 1319
SfcI	CTRYAG	1 cut(s)	942
SinI	GGWCC	1 cut(s)	1138
SmiMI	CAYNNNNRTG	3 cut(s)	645, 702, 1172
SmlI	CTYRAG	2 cut(s)	743, 1148
SmoI	CTYRAG	2 cut(s)	743, 1148
Sse9I	AATT	5 cut(s)	436, 456, 610, 753, 1315
SsiI	CCGC	7 cut(s)	34, 432, 468, 721, 869, 1164, 1253
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	3 cut(s)	372, 563, 701
StyD4I	CCNGG	4 cut(s)	107, 214, 352, 393
TaaI	ACNGT	2 cut(s)	481, 1087
TaiI	ACGT	5 cut(s)	742, 977, 1002, 1048, 1234
TaqI	TCGA	1 cut(s)	923
TasI	AATT	5 cut(s)	436, 456, 610, 753, 1315
TauI	GCSGC	1 cut(s)	1166
TfiI	GAWTC	5 cut(s)	65, 242, 362, 1030, 1358
Tru1I	TTAA	6 cut(s)	188, 486, 710, 822, 1058, 1089
Tru9I	TTAA	6 cut(s)	188, 486, 710, 822, 1058, 1089
TscAI	CASTG	1 cut(s)	1042
TseI	GCWGC	2 cut(s)	143, 225
TspGWI	ACGGA	2 cut(s)	109, 196
TspRI	CASTG	1 cut(s)	1042
VpaK11BI	GGWCC	1 cut(s)	1138
XagI	CCTNNNNNAGG	1 cut(s)	289
XapI	RAATTY	2 cut(s)	436, 610
XbaI	TCTAGA	1 cut(s)	700
XmnI	GAANNNNTTC	2 cut(s)	310, 1125
XspI	CTAG	3 cut(s)	372, 563, 701
ZraI	GACGTC	1 cut(s)	1046
Zsp2I	ATGCAT	2 cut(s)	772, 1375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.