Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Reverse (-)

74233454 .. 74237091

Gene Structure 3638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035966

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGTGTTTCAAAGAGTTTTTCAACAAAAGATATGATAAAAACCACACCAGCCGGCCTAAACCTCAGGAAATGAAGAAAGCTCAAAGTCCTCATAACCAGAGGAATCAGTTTTCCAATTTTCACTTTGAAGATGACAAGAATAATAAAACCAAGCAACAGAGTGGAAGCCGTTCTGCCCTGAAGCATATGAAGGCTGCAGTGAAGAAAGCTTTCACGGTTCTTTTCTTTCGAAGAAAGGTCAACTCAAAGGCTGCTGCTTCCGTAATTGATCCAAGAAGAAACAGTAATAGAATCAGAGGAGTTTCATCTTCAACCGATGCTTCATCAGGGAGTACTGACACTAAGAACTCATCAAAGCTCAAGTTATCTGGGTCTTCTGGTTCTTCTACTACCCAGATTGGAGTAATTGAGACGACAAATTTCTCCTACGAAGAGATTTCTAAGGCAACCGAAAAGTTCTCTCAAGCAAATAAAATTGGTGAGGGTGCTTTTGGGACAGTGTACAGGGGAAGGCTCGGGGATGGATCTCTTGTTGCGGTAAAGCGTGCCAAGAAGACAGTATCTGACAAGCTCTTAGCATTGGAGTTCAAGAATGAAATACTCACCTTGTCCATGATTGAGCATCTGAATTTGGTAAGATTATATGGATATTTGGAGCATGGGGACGAGCGGATTATTTTGGTTGAATATGTTGGCAACGGAACACTACGGGAACATCTGGATGGTACACACGGAAATGGACTTGAAATTGCAGAACGGTTAGACATCGCAATTGATGTGGCTCATGCAATTACCTATCTTCACACGTACACAGATACTCCAATAATCCACAGAGACATAAAATCATTAAACATCCTCATCACAGAGAAATTACGGGCGAAAGTAGCAGACTTTGGGTTTGCACGATTGTCTGCAGACCCTAATGCAACTCATATTTCAACTCAGATTAAAGGAACGGCAGGCTACTTGGATCCTGAGTACCTCAAGACTTATCAGCTCACCGAAAAGAGTGATGTTTACTCCTTTGGTGTGTTGCTTGTAGAGCTGATGACAGGAAGACGACCCATTGAACCCACCAAACCAAGCAATGAAAGATTAACAACAAGATGGGCAATCCAAACATTGAAACGAGGAGAAGCTATACTTGTCATGGATCCAAGGCTACGGAGAAGTGCGGCATCAACCATGGCAATGGAGAAAATCCTCAAGCTAGCTCACGAGTGCCTTGCACCTTTAAGACAGTCAAGACCATCCATGAAAAAATGTGCTGAAGTATTATGGGGGATTCGCAAGGAATTCAGAGAGAAAGCCTTCCCTGCTCCTCCAACTTCTCACTACTCTGACAATTTTCCTCTGAGAGATGCTAAGATGACTAGGCAGCAGACTTTTGGAATTGAAGATGGTGATAGCTATAAATTTATCTCAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

477

Amino Acids

53.58

Weight (kDa)

9.72

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	154 - 427	6.8e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	155 - 426	1.1e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	3 cut(s)	536, 670, 1175
AclWI	GGATC	6 cut(s)	263, 532, 965, 978, 1148, 1161
AcsI	RAATTY	4 cut(s)	418, 628, 1295, 1415
AcuI	CTGAAG	2 cut(s)	200, 1290
AfaI	GTAC	5 cut(s)	334, 503, 727, 809, 980
AflIII	ACRYGT	1 cut(s)	804
Alw26I	GTCTC	2 cut(s)	404, 828
AlwI	GGATC	6 cut(s)	263, 532, 965, 978, 1148, 1161
AlwNI	CAGNNNCTG	1 cut(s)	563
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	4 cut(s)	194, 251, 254, 1378
ApoI	RAATTY	4 cut(s)	418, 628, 1295, 1415
ArsI	GACNNNNNNTTYG	2 cut(s)	881, 913
Asp700I	GAANNNNTTC	3 cut(s)	169, 209, 1310
AsuHPI	GGTGA	4 cut(s)	491, 595, 991, 1415
AsuII	TTCGAA	1 cut(s)	229
AsuNHI	GCTAGC	1 cut(s)	1210
AvaI	CYCGRG	1 cut(s)	515
AxyI	CCTNAGG	1 cut(s)	63
BamHI	GGATCC	2 cut(s)	970, 1153
BauI	CACGAG	1 cut(s)	1217
BbsI	GAAGAC	3 cut(s)	366, 560, 1063
BbvI	GCAGC	4 cut(s)	181, 238, 241, 1390
BccI	CCATC	5 cut(s)	515, 716, 1101, 1258, 1394
BceAI	ACGGC	2 cut(s)	153, 972
BcgI	CGANNNNNNTGC	2 cut(s)	1208, 1242
BcoDI	GTCTC	2 cut(s)	404, 828
BfaI	CTAG	2 cut(s)	1211, 1374
BfmI	CTRYAG	2 cut(s)	195, 912
BisI	GCNGC	5 cut(s)	195, 252, 255, 1176, 1379
BlsI	GCNGC	5 cut(s)	196, 253, 256, 1177, 1380
BmcAI	AGTACT	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	972, 1155
BmsI	GCATC	4 cut(s)	307, 631, 1187, 1351
BmtI	GCTAGC	1 cut(s)	1214
BpiI	GAAGAC	3 cut(s)	366, 560, 1063
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	4 cut(s)	344, 447, 968, 1190
BsaAI	YACGTR	1 cut(s)	807
BsaJI	CCNNGG	2 cut(s)	1157, 1185
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bse118I	RCCGGY	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	63
Bse3DI	GCAATG	2 cut(s)	1093, 1197
BseDI	CCNNGG	2 cut(s)	1157, 1185
BseGI	GGATG	4 cut(s)	526, 727, 852, 1250
BseMI	GCAATG	2 cut(s)	1093, 1197
BseMII	CTCAG	4 cut(s)	77, 956, 966, 1346
BseRI	GAGGAG	3 cut(s)	312, 1146, 1311
BseXI	GCAGC	4 cut(s)	181, 238, 241, 1390
BshFI	GGCC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	2 cut(s)	508, 677
BsmAI	GTCTC	2 cut(s)	404, 828
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	2 cut(s)	508, 677
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	515
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	268, 524, 970, 1153
Bsp19I	CCATGG	1 cut(s)	1185
BspACI	CCGC	3 cut(s)	536, 670, 1175
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	4 cut(s)	76, 955, 967, 1347
BspLI	GGNNCC	2 cut(s)	972, 1155
BspMAI	CTGCAG	2 cut(s)	199, 916
BspOI	GCTAGC	1 cut(s)	1214
BspPI	GGATC	6 cut(s)	263, 532, 965, 978, 1148, 1161
BspT104I	TTCGAA	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	1093, 1197
BsrFI	RCCGGY	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	501
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	1157, 1185
BssMI	GATC	4 cut(s)	268, 524, 970, 1153
BssSI	CACGAG	1 cut(s)	1217
BssT1I	CCWWGG	2 cut(s)	1157, 1185
Bst2BI	CACGAG	1 cut(s)	1217
Bst4CI	ACNGT	6 cut(s)	217, 284, 499, 559, 759, 1242
Bst6I	CTCTTC	1 cut(s)	426
BstAUI	TGTACA	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	807
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	4 cut(s)	53, 546, 961, 1212
BstDEI	CTNAG	9 cut(s)	63, 342, 441, 574, 942, 975, 1355, 1365, 1423
BstDSI	CCRYGG	1 cut(s)	1185
BstF5I	GGATG	4 cut(s)	526, 727, 852, 1250
BstKTI	GATC	4 cut(s)	271, 527, 973, 1156
BstMAI	GTCTC	2 cut(s)	404, 828
BstMBI	GATC	4 cut(s)	268, 524, 970, 1153
BstMWI	GCNNNNNNNGC	3 cut(s)	884, 1042, 1316
BstSFI	CTRYAG	2 cut(s)	195, 912
BstV1I	GCAGC	4 cut(s)	181, 238, 241, 1390
BstV2I	GAAGAC	3 cut(s)	366, 560, 1063
BstX2I	RGATCY	3 cut(s)	524, 970, 1153
BstXI	CCANNNNNNTGG	1 cut(s)	1192
BstYI	RGATCY	3 cut(s)	524, 970, 1153
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	1185
BtgZI	GCGATG	1 cut(s)	751
BtsCI	GGATG	4 cut(s)	526, 727, 852, 1250
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 504
Cac8I	GCNNGC	4 cut(s)	53, 546, 961, 1212
CaiI	CAGNNNCTG	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	51
Csp6I	GTAC	5 cut(s)	333, 502, 726, 808, 979
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviAII	CATG	6 cut(s)	613, 659, 785, 1150, 1186, 1255
CviQI	GTAC	5 cut(s)	333, 502, 726, 808, 979
DdeI	CTNAG	9 cut(s)	63, 342, 441, 574, 942, 975, 1355, 1365, 1423
DpnI	GATC	4 cut(s)	270, 526, 972, 1155
DpnII	GATC	4 cut(s)	268, 524, 970, 1153
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	1157, 1185
Eco57I	CTGAAG	2 cut(s)	200, 1290
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	515
EcoRI	GAATTC	1 cut(s)	1295
EcoT14I	CCWWGG	2 cut(s)	1157, 1185
ErhI	CCWWGG	2 cut(s)	1157, 1185
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	6 cut(s)	616, 662, 788, 1153, 1189, 1258
FalI	AAGNNNNNCTT	2 cut(s)	1128, 1160
FaqI	GGGAC	2 cut(s)	508, 677
FatI	CATG	6 cut(s)	612, 658, 784, 1149, 1185, 1254
FauNDI	CATATG	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	195, 252, 255, 1176, 1379
FokI	GGATG	4 cut(s)	533, 734, 839, 1237
Fsp4HI	GCNGC	5 cut(s)	195, 252, 255, 1176, 1379
FspBI	CTAG	2 cut(s)	1211, 1374
GluI	GCNGC	5 cut(s)	195, 252, 255, 1176, 1379
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	6 cut(s)	616, 662, 788, 1153, 1189, 1258
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	3 cut(s)	103, 291, 1285
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	4 cut(s)	491, 595, 991, 1415
Hpy166II	GTNNAC	5 cut(s)	241, 502, 728, 810, 1018
Hpy188I	TCNGA	7 cut(s)	296, 565, 627, 945, 1301, 1342, 1356
Hpy188III	TCNNGA	7 cut(s)	65, 589, 719, 974, 985, 1217, 1245
Hpy8I	GTNNAC	5 cut(s)	241, 502, 728, 810, 1018
HpyAV	CCTTC	3 cut(s)	184, 504, 1321
HpyCH4III	ACNGT	6 cut(s)	217, 284, 499, 559, 759, 1242
HpyCH4IV	ACGT	1 cut(s)	806
HpyCH4V	TGCA	7 cut(s)	197, 752, 788, 902, 914, 926, 1229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	884, 1042, 1316
HpyF3I	CTNAG	9 cut(s)	63, 342, 441, 574, 942, 975, 1355, 1365, 1423
HpySE526I	ACGT	1 cut(s)	806
Hsp92II	CATG	6 cut(s)	616, 662, 788, 1153, 1189, 1258
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	4 cut(s)	268, 524, 970, 1153
LmnI	GCTCC	2 cut(s)	655, 1324
Lsp1109I	GCAGC	4 cut(s)	181, 238, 241, 1390
LweI	GCATC	4 cut(s)	307, 631, 1187, 1351
MaeI	CTAG	2 cut(s)	1211, 1374
MaeII	ACGT	1 cut(s)	806
MalI	GATC	4 cut(s)	270, 526, 972, 1155
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	4 cut(s)	268, 524, 970, 1153
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	3 cut(s)	524, 970, 1153
MmeI	TCCRAC	1 cut(s)	1349
MroNI	GCCGGC	1 cut(s)	51
MroXI	GAANNNNTTC	3 cut(s)	169, 209, 1310
MseI	TTAA	4 cut(s)	848, 948, 1097, 1235
MslI	CAYNNNNRTG	3 cut(s)	720, 735, 1190
MspI	CCGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	771
MwoI	GCNNNNNNNGC	3 cut(s)	884, 1042, 1316
NaeI	GCCGGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	1185
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	4 cut(s)	268, 524, 970, 1153
NgoMIV	GCCGGC	1 cut(s)	51
NheI	GCTAGC	1 cut(s)	1210
NlaIII	CATG	6 cut(s)	616, 662, 788, 1153, 1189, 1258
NlaIV	GGNNCC	2 cut(s)	972, 1155
NspV	TTCGAA	1 cut(s)	229
PdiI	GCCGGC	1 cut(s)	53
PdmI	GAANNNNTTC	3 cut(s)	169, 209, 1310
PfeI	GAWTC	3 cut(s)	103, 291, 1285
PkrI	GCNGC	5 cut(s)	196, 253, 256, 1177, 1380
Ppu21I	YACGTR	1 cut(s)	807
PspN4I	GGNNCC	2 cut(s)	972, 1155
PstI	CTGCAG	2 cut(s)	199, 916
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	3 cut(s)	524, 970, 1153
RsaI	GTAC	5 cut(s)	334, 503, 727, 809, 980
RsaNI	GTAC	5 cut(s)	333, 502, 726, 808, 979
RseI	CAYNNNNRTG	3 cut(s)	720, 735, 1190
SaqAI	TTAA	4 cut(s)	848, 948, 1097, 1235
SatI	GCNGC	5 cut(s)	195, 252, 255, 1176, 1379
Sau3AI	GATC	4 cut(s)	268, 524, 970, 1153
ScaI	AGTACT	1 cut(s)	334
SfaNI	GCATC	4 cut(s)	307, 631, 1187, 1351
SfcI	CTRYAG	2 cut(s)	195, 912
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	3 cut(s)	720, 735, 1190
SmlI	CTYRAG	4 cut(s)	359, 462, 983, 1205
SmoI	CTYRAG	4 cut(s)	359, 462, 983, 1205
SsiI	CCGC	3 cut(s)	536, 670, 1175
SspMI	CTAG	2 cut(s)	1211, 1374
StyI	CCWWGG	2 cut(s)	1157, 1185
TaaI	ACNGT	6 cut(s)	217, 284, 499, 559, 759, 1242
TaiI	ACGT	1 cut(s)	809
TaqI	TCGA	1 cut(s)	229
TatI	WGTACW	2 cut(s)	332, 501
TauI	GCSGC	1 cut(s)	1178
TfiI	GAWTC	3 cut(s)	103, 291, 1285
Tru1I	TTAA	4 cut(s)	848, 948, 1097, 1235
Tru9I	TTAA	4 cut(s)	848, 948, 1097, 1235
TscAI	CASTG	2 cut(s)	204, 504
TseI	GCWGC	4 cut(s)	194, 251, 254, 1378
TspDTI	ATGAA	7 cut(s)	86, 203, 294, 312, 609, 1104, 1271
TspGWI	ACGGA	4 cut(s)	250, 714, 747, 1180
TspRI	CASTG	2 cut(s)	204, 504
XapI	RAATTY	4 cut(s)	418, 628, 1295, 1415
XmnI	GAANNNNTTC	3 cut(s)	169, 209, 1310
XspI	CTAG	2 cut(s)	1211, 1374
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.