Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Reverse (-)

74242719 .. 74246280

Gene Structure 3562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG465500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGAAAGCTCAAAGTCCTCATAACCAGAGGAATCAGTTTTCCAATTTTCACTTTGAAGATGACAAGAATAATAAAACCAAGCAACAGAGTGGAAGCCGTTCTGCCCTGAAGCATATGAGGGCTGCAGTGAAGAAAGTTTTCACAGTTCTTTTCTTTCGAAGAAAGGTCAACTCAAAGGCTGCTGCTTCTGTAATTGATCCAAGAAGAAACAGTAATAGAATCAGAGGAGTTTCATCTTCAACCGATGGTTGGAGTACCGACACTAAGAACTCATCAAAGCTCAAGTTATCTGGGTCTTCTGGTTCTTCTACTACTCAGATTGGAGTAATTGAGACGACAAATTTCTCCTACGAAGAGATTTCTAAGGCAACCGAAAAGTTCTCTCAAGCAAATAAAATTGGTGAGGGTGCTTTTGGGACAGTGTACAGGGGAAGGCTCGGGGATGGATCTCTTGTTGCTGTAAAGCGTGCCAAGAAGACAGTATCTGACAAGCTCTTAGCATTGGAGTTCAAGAATGAAGTACTCACCTTGTCCATGATTGAGCATCTGAATTTGGTAAGATTATATGGATATTTGGAGCATGGGGACGAGCGGATTATTTTGGTTGAATATGTTGGCAACGGAACACTACGGGAACATCTGGATGGTACACGCGGAAATGGACTTGAAATTGCAGAACGGTTAGACATCGCAATTGATGTGGCTCATGCAATTACCTATCTTCACACGTACACAGGCAATCCAAACATTGAAACGAGGAGAAGCTATACTAGTCATGGATCCAAGGCTACGGAGAAGTGCGGCATCAACCATGGCAATGGAGAAAATCCTCAAGCTAGCTCACGAGTGCCTTGCACCTTTAAGACAATCAAGACCCTCCATGAAAAAATGACTCACATTCGGATTTGCATCAATAAATCGTCGTGCAACACATTCACAACCCGTGCCACTAATCTTAGCATTTTCCATGAACAAGACATCAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

330

Amino Acids

36.75

Weight (kDa)

9.74

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	129 - 244	1.9e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	130 - 244	5.1e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	595
AccII	CGCG	1 cut(s)	657
AciI	CCGC	3 cut(s)	595, 657, 804
AclWI	GGATC	4 cut(s)	194, 457, 777, 790
AcsI	RAATTY	2 cut(s)	343, 553
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	5 cut(s)	259, 428, 525, 652, 734
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	6 cut(s)	59, 243, 514, 611, 671, 755
AhlI	ACTAGT	1 cut(s)	773
AluBI	AGCT	6 cut(s)	11, 283, 496, 768, 839, 843
AluI	AGCT	6 cut(s)	11, 283, 496, 768, 839, 843
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	4 cut(s)	194, 457, 777, 790
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	440
ApeKI	GCWGC	3 cut(s)	125, 182, 185
ApoI	RAATTY	2 cut(s)	343, 553
Asp700I	GAANNNNTTC	2 cut(s)	100, 140
AsuHPI	GGTGA	2 cut(s)	416, 520
AsuII	TTCGAA	1 cut(s)	160
AsuNHI	GCTAGC	1 cut(s)	839
AvaI	CYCGRG	1 cut(s)	440
BamHI	GGATCC	1 cut(s)	782
BauI	CACGAG	1 cut(s)	846
BbsI	GAAGAC	2 cut(s)	291, 485
BbvI	GCAGC	3 cut(s)	112, 169, 172
BccI	CCATC	3 cut(s)	242, 440, 641
BceAI	ACGGC	1 cut(s)	84
BcgI	CGANNNNNNTGC	2 cut(s)	837, 871
BcoDI	GTCTC	1 cut(s)	329
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	2 cut(s)	774, 840
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	4 cut(s)	126, 183, 186, 805
BlsI	GCNGC	4 cut(s)	127, 184, 187, 806
BmcAI	AGTACT	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	784
BmsI	GCATC	3 cut(s)	556, 816, 921
BmtI	GCTAGC	1 cut(s)	843
BpiI	GAAGAC	2 cut(s)	291, 485
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	3 cut(s)	269, 372, 819
BsaAI	YACGTR	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	786, 814
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	826
Bse8I	GATNNNNATC	1 cut(s)	911
BseDI	CCNNGG	2 cut(s)	786, 814
BseGI	GGATG	2 cut(s)	451, 652
BseJI	GATNNNNATC	1 cut(s)	911
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	826
BseMII	CTCAG	1 cut(s)	332
BseRI	GAGGAG	2 cut(s)	243, 775
BseXI	GCAGC	3 cut(s)	112, 169, 172
Bsh1236I	CGCG	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	2 cut(s)	433, 602
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsmFI	GGGAC	2 cut(s)	433, 602
BsoBI	CYCGRG	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	3 cut(s)	199, 449, 782
Bsp19I	CCATGG	1 cut(s)	814
BspACI	CCGC	3 cut(s)	595, 657, 804
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	1 cut(s)	784
BspMAI	CTGCAG	1 cut(s)	130
BspOI	GCTAGC	1 cut(s)	843
BspPI	GGATC	4 cut(s)	194, 457, 777, 790
BspT104I	TTCGAA	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	826
BsrGI	TGTACA	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	786, 814
BssMI	GATC	3 cut(s)	199, 449, 782
BssSI	CACGAG	1 cut(s)	846
BssT1I	CCWWGG	2 cut(s)	786, 814
Bst2BI	CACGAG	1 cut(s)	846
Bst4CI	ACNGT	5 cut(s)	148, 215, 424, 484, 684
Bst6I	CTCTTC	1 cut(s)	351
BstAUI	TGTACA	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	732
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	471, 841
BstDEI	CTNAG	5 cut(s)	267, 318, 366, 499, 959
BstDSI	CCRYGG	1 cut(s)	814
BstF5I	GGATG	2 cut(s)	451, 652
BstFNI	CGCG	1 cut(s)	657
BstKTI	GATC	3 cut(s)	202, 452, 785
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	199, 449, 782
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	3 cut(s)	112, 169, 172
BstV2I	GAAGAC	2 cut(s)	291, 485
BstX2I	RGATCY	2 cut(s)	449, 782
BstXI	CCANNNNNNTGG	1 cut(s)	821
BstYI	RGATCY	2 cut(s)	449, 782
BtgI	CCRYGG	1 cut(s)	814
BtgZI	GCGATG	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	451, 652
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 429
Cac8I	GCNNGC	2 cut(s)	471, 841
CaiI	CAGNNNCTG	1 cut(s)	488
Csp6I	GTAC	5 cut(s)	258, 427, 524, 651, 733
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	7 cut(s)	538, 584, 710, 779, 815, 884, 971
CviQI	GTAC	5 cut(s)	258, 427, 524, 651, 733
DdeI	CTNAG	5 cut(s)	267, 318, 366, 499, 959
DpnI	GATC	3 cut(s)	201, 451, 784
DpnII	GATC	3 cut(s)	199, 449, 782
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	786, 814
Eco57I	CTGAAG	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	440
EcoT14I	CCWWGG	2 cut(s)	786, 814
ErhI	CCWWGG	2 cut(s)	786, 814
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	7 cut(s)	541, 587, 713, 782, 818, 887, 974
FaqI	GGGAC	2 cut(s)	433, 602
FatI	CATG	7 cut(s)	537, 583, 709, 778, 814, 883, 970
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	126, 183, 186, 805
FokI	GGATG	2 cut(s)	458, 659
Fsp4HI	GCNGC	4 cut(s)	126, 183, 186, 805
FspBI	CTAG	2 cut(s)	774, 840
GluI	GCNGC	4 cut(s)	126, 183, 186, 805
Hin1II	CATG	7 cut(s)	541, 587, 713, 782, 818, 887, 974
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	34, 222, 895
HphI	GGTGA	2 cut(s)	416, 520
Hpy166II	GTNNAC	4 cut(s)	172, 427, 653, 735
Hpy188I	TCNGA	5 cut(s)	227, 321, 490, 552, 906
Hpy188III	TCNNGA	4 cut(s)	514, 644, 846, 874
Hpy8I	GTNNAC	4 cut(s)	172, 427, 653, 735
Hpy99I	CGWCG	1 cut(s)	928
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	5 cut(s)	148, 215, 424, 484, 684
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	6 cut(s)	128, 677, 713, 858, 912, 930
HpyF3I	CTNAG	5 cut(s)	267, 318, 366, 499, 959
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	7 cut(s)	541, 587, 713, 782, 818, 887, 974
Kzo9I	GATC	3 cut(s)	199, 449, 782
LmnI	GCTCC	1 cut(s)	580
LpnPI	CCDG	7 cut(s)	41, 122, 279, 288, 415, 629, 723
Lsp1109I	GCAGC	3 cut(s)	112, 169, 172
LweI	GCATC	3 cut(s)	556, 816, 921
MaeI	CTAG	2 cut(s)	774, 840
MaeII	ACGT	1 cut(s)	731
MalI	GATC	3 cut(s)	201, 451, 784
MbiI	CCGCTC	1 cut(s)	595
MboI	GATC	3 cut(s)	199, 449, 782
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	2 cut(s)	449, 782
MluCI	AATT	9 cut(s)	46, 195, 330, 343, 399, 553, 672, 696, 714
MlyI	GAGTC	1 cut(s)	889
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	8 cut(s)	24, 30, 114, 221, 400, 753, 843, 890
MroXI	GAANNNNTTC	2 cut(s)	100, 140
MseI	TTAA	2 cut(s)	864, 991
MslI	CAYNNNNRTG	2 cut(s)	645, 819
MunI	CAATTG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	657
NcoI	CCATGG	1 cut(s)	814
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	3 cut(s)	199, 449, 782
NheI	GCTAGC	1 cut(s)	839
NlaIII	CATG	7 cut(s)	541, 587, 713, 782, 818, 887, 974
NlaIV	GGNNCC	1 cut(s)	784
NspV	TTCGAA	1 cut(s)	160
PdmI	GAANNNNTTC	2 cut(s)	100, 140
PfeI	GAWTC	2 cut(s)	34, 222
PkrI	GCNGC	4 cut(s)	127, 184, 187, 806
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
Ppu21I	YACGTR	1 cut(s)	732
PspN4I	GGNNCC	1 cut(s)	784
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	449, 782
RsaI	GTAC	5 cut(s)	259, 428, 525, 652, 734
RsaNI	GTAC	5 cut(s)	258, 427, 524, 651, 733
RseI	CAYNNNNRTG	2 cut(s)	645, 819
SaqAI	TTAA	2 cut(s)	864, 991
SatI	GCNGC	4 cut(s)	126, 183, 186, 805
Sau3AI	GATC	3 cut(s)	199, 449, 782
ScaI	AGTACT	1 cut(s)	525
SchI	GAGTC	1 cut(s)	889
SfaNI	GCATC	3 cut(s)	556, 816, 921
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	645, 819
SmlI	CTYRAG	3 cut(s)	284, 387, 834
SmoI	CTYRAG	3 cut(s)	284, 387, 834
SpeI	ACTAGT	1 cut(s)	773
Sse9I	AATT	9 cut(s)	46, 195, 330, 343, 399, 553, 672, 696, 714
SsiI	CCGC	3 cut(s)	595, 657, 804
SspI	AATATT	1 cut(s)	988
SspMI	CTAG	2 cut(s)	774, 840
StyI	CCWWGG	2 cut(s)	786, 814
TaaI	ACNGT	5 cut(s)	148, 215, 424, 484, 684
TaiI	ACGT	1 cut(s)	734
TaqI	TCGA	1 cut(s)	160
TasI	AATT	9 cut(s)	46, 195, 330, 343, 399, 553, 672, 696, 714
TatI	WGTACW	2 cut(s)	426, 523
TauI	GCSGC	1 cut(s)	807
TfiI	GAWTC	2 cut(s)	34, 222
Tru1I	TTAA	2 cut(s)	864, 991
Tru9I	TTAA	2 cut(s)	864, 991
TscAI	CASTG	2 cut(s)	135, 429
TseI	GCWGC	3 cut(s)	125, 182, 185
TspDTI	ATGAA	5 cut(s)	17, 225, 534, 900, 987
TspGWI	ACGGA	2 cut(s)	639, 809
TspRI	CASTG	2 cut(s)	135, 429
XapI	RAATTY	2 cut(s)	343, 553
XmnI	GAANNNNTTC	2 cut(s)	100, 140
XspI	CTAG	2 cut(s)	774, 840
ZrmI	AGTACT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.