Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Reverse (-)

75661403 .. 75663668

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG479100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCCTCGAAACCATTTGCAGACAGTATCTGACAAGCTCTTGGCATTGGAGTTCAAGAATGAAGTACTCACCTTGTCCATGATTGAGCATCTGAATTTGGTAAGATTATATGGATATTTGGAGCATGGGGACGAGCGGATTATTTTGGTTGAATATGTTGGCAACGGAACACTACGGGAACATCTGGATGGTACACGCGGAAATGGACTTGAAATTGCAGAACGGTTAGACATCGCAATTGATGTGGCTCATGCAATTACCTATCTTCACACGTACACAGGCAATCCAAACATTGAAACGAGGAGAAGCTATACTAGTCATGGATCCAAGGCTACGGAGAAGTGCGGCATCAACCATGGCAATGGAGAAAATCCTCAAGCTAGCTCACGAGTGCCTTGCACCTTTAAGACAATCAAGACCCTCCATGAAAAAATGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.43

Weight (kDa)

6.49

Isoelectric Point (pI)

26.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	15 - 91	2.7e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	17 - 91	1.5e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	136
AccII	CGCG	1 cut(s)	198
AciI	CCGC	3 cut(s)	136, 198, 345
AclWI	GGATC	2 cut(s)	318, 331
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	3 cut(s)	66, 193, 275
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	4 cut(s)	55, 152, 212, 296
AhlI	ACTAGT	1 cut(s)	314
AluBI	AGCT	4 cut(s)	37, 309, 380, 384
AluI	AGCT	4 cut(s)	37, 309, 380, 384
AlwI	GGATC	2 cut(s)	318, 331
AlwNI	CAGNNNCTG	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	61
AsuNHI	GCTAGC	1 cut(s)	380
BamHI	GGATCC	1 cut(s)	323
BauI	CACGAG	1 cut(s)	387
BccI	CCATC	1 cut(s)	182
BcgI	CGANNNNNNTGC	2 cut(s)	378, 412
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	2 cut(s)	315, 381
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
BmcAI	AGTACT	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	325
BmsI	GCATC	2 cut(s)	97, 357
BmtI	GCTAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	327, 355
Bse3DI	GCAATG	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	327, 355
BseGI	GGATG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	323
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	3 cut(s)	136, 198, 345
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	325
BspOI	GCTAGC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	318, 331
BsrBI	CCGCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	327, 355
BssMI	GATC	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	387
BssT1I	CCWWGG	2 cut(s)	327, 355
Bst2BI	CACGAG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	25, 225
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	382
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	323
BstUI	CGCG	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	355
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	29
Csp6I	GTAC	3 cut(s)	65, 192, 274
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	6 cut(s)	79, 125, 251, 320, 356, 425
CviJI	RGCY	6 cut(s)	37, 248, 309, 332, 380, 384
CviKI_1	RGCY	6 cut(s)	37, 248, 309, 332, 380, 384
CviQI	GTAC	3 cut(s)	65, 192, 274
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
Eco130I	CCWWGG	2 cut(s)	327, 355
EcoT14I	CCWWGG	2 cut(s)	327, 355
ErhI	CCWWGG	2 cut(s)	327, 355
FaeI	CATG	6 cut(s)	82, 128, 254, 323, 359, 428
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	6 cut(s)	78, 124, 250, 319, 355, 424
Fnu4HI	GCNGC	1 cut(s)	346
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	346
FspBI	CTAG	2 cut(s)	315, 381
GluI	GCNGC	1 cut(s)	346
Hin1II	CATG	6 cut(s)	82, 128, 254, 323, 359, 428
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	194, 276
Hpy188I	TCNGA	2 cut(s)	31, 93
Hpy188III	TCNNGA	4 cut(s)	55, 185, 387, 415
Hpy8I	GTNNAC	2 cut(s)	194, 276
HpyCH4III	ACNGT	2 cut(s)	25, 225
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	4 cut(s)	19, 218, 254, 399
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	6 cut(s)	82, 128, 254, 323, 359, 428
Kzo9I	GATC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	170, 264
LweI	GCATC	2 cut(s)	97, 357
MaeI	CTAG	2 cut(s)	315, 381
MaeII	ACGT	1 cut(s)	272
MalI	GATC	1 cut(s)	325
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	1 cut(s)	323
MboII	GAAGA	1 cut(s)	257
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	4 cut(s)	94, 213, 237, 255
MnlI	CCTC	4 cut(s)	15, 294, 384, 431
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	186, 360
MunI	CAATTG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	1 cut(s)	323
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	6 cut(s)	82, 128, 254, 323, 359, 428
NlaIV	GGNNCC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	3 cut(s)	66, 193, 275
RsaNI	GTAC	3 cut(s)	65, 192, 274
RseI	CAYNNNNRTG	2 cut(s)	186, 360
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	1 cut(s)	323
ScaI	AGTACT	1 cut(s)	66
SetI	ASST	8 cut(s)	39, 74, 263, 275, 311, 382, 386, 404
SfaNI	GCATC	2 cut(s)	97, 357
SmiMI	CAYNNNNRTG	2 cut(s)	186, 360
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	4 cut(s)	94, 213, 237, 255
SsiI	CCGC	3 cut(s)	136, 198, 345
SspMI	CTAG	2 cut(s)	315, 381
StyI	CCWWGG	2 cut(s)	327, 355
TaaI	ACNGT	2 cut(s)	25, 225
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	7
TasI	AATT	4 cut(s)	94, 213, 237, 255
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	1 cut(s)	348
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TspDTI	ATGAA	2 cut(s)	75, 441
TspGWI	ACGGA	2 cut(s)	180, 350
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	2 cut(s)	315, 381
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.