Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Reverse (-)

76931831 .. 76933571

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG447600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAGAAAGCTCAAAGTCCTCATAACCAGAGGAATCAGTTTTCCAATTTTCACTTTGAAGATGACAAGAATAATAAAACCAAGCAACAGAGTGGAAGCCGTTCTGCCCTGAAGCATATGAAGGCTGCAGTGAAGAAAGTTTTTACAGTTCTTTTCTTTCGAAGAAAGGTCAACTCAAAGGCTGCTGCTTCTGTAATTGATCCAAGAAGAAACAGTAATAGAATCAGAGGAGTTTCATCTTCAACCGATGGTTGGAGTACTGACACTAAGAACTCATCAAAGCTCAAGTTATCTGGGTCTTCTGGTTCTTCTACTACTCAGATTGGAGTAATTGAGACGACAAATTTCTCCTACGAAGAGATTTCTAAGGCAACCGAAAAGTTCTCTCAAGCAAATAAAATTGGTGAGGGTGCTTTTGGGACAGTGTACAGGGGAAGGCTCGGGGATGGATCTCTTGTTGCTGTAAAGCGTGCCAAGAAGACAGTATCTGACAAGCTCTTAGCATTGGAGTTCAAGAATGAAGTGCTCACCTTGTCCATGATTGAGCATCTGAATTTGGTAAGATTATATGGATATTTGGAGCATGGGGAAGAGCGGATTATTTTGGTTGAATATGTTAGCAACGGAACACTACGGGAACATCTGGATGGTACACGCGGAAATGGACTTGAAATTGCAGAACGGTTAGACATCGCAATTGATGTGGCTCATGCAATTACCTATCTTCACACGTACACAGGTATGCACTTCATTTTCATTCCGAAGTACTTGGACCAAATTATTGTCCAAAAGTTTATGTTCGGTAGCTTCTTCGGCCTTTTTCGTTTCAGTTTATGGACTTCACTGTGGAGACCATATACCCATAGCTTTCCTTTTGTTACAGTATGTGAAGAAACAAGTAAAAACAGACCTGTTCTAACATGTGTATATCTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

312

Amino Acids

35.29

Weight (kDa)

9.73

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	129 - 249	5.5e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	130 - 249	4.9e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	595
AccII	CGCG	1 cut(s)	657
AciI	CCGC	2 cut(s)	595, 657
AclWI	GGATC	2 cut(s)	194, 457
AcsI	RAATTY	2 cut(s)	343, 553
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	5 cut(s)	259, 428, 652, 734, 767
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflIII	ACRYGT	2 cut(s)	729, 920
AgsI	TTSAA	5 cut(s)	59, 243, 514, 611, 671
AluBI	AGCT	5 cut(s)	11, 283, 496, 807, 867
AluI	AGCT	5 cut(s)	11, 283, 496, 807, 867
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	329, 844
AlwI	GGATC	2 cut(s)	194, 457
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	3 cut(s)	125, 182, 185
ApoI	RAATTY	2 cut(s)	343, 553
Asp700I	GAANNNNTTC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	2 cut(s)	416, 520
AsuII	TTCGAA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	772
BbsI	GAAGAC	2 cut(s)	291, 485
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	3 cut(s)	112, 169, 172
BccI	CCATC	3 cut(s)	242, 440, 641
BceAI	ACGGC	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	329, 844
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	3 cut(s)	126, 183, 186
BlsI	GCNGC	3 cut(s)	127, 184, 187
BmcAI	AGTACT	2 cut(s)	259, 767
Bme18I	GGWCC	1 cut(s)	772
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	772
BmsI	GCATC	1 cut(s)	556
BpiI	GAAGAC	2 cut(s)	291, 485
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	2 cut(s)	269, 372
BsaAI	YACGTR	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	844
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	451, 652
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	112, 169, 172
Bsh1236I	CGCG	1 cut(s)	657
BshFI	GGCC	1 cut(s)	816
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	329, 844
BsmBI	CGTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	816
Bso31I	GGTCTC	1 cut(s)	844
BsoBI	CYCGRG	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	199, 449
BspACI	CCGC	2 cut(s)	595, 657
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	657
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	194, 457
BspQI	GCTCTTC	1 cut(s)	585
BspT104I	TTCGAA	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	844
BsrBI	CCGCTC	1 cut(s)	595
BsrGI	TGTACA	1 cut(s)	426
BssMI	GATC	2 cut(s)	199, 449
Bst4CI	ACNGT	7 cut(s)	148, 215, 424, 484, 684, 846, 883
Bst6I	CTCTTC	2 cut(s)	351, 585
BstAUI	TGTACA	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	732
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	5 cut(s)	267, 318, 366, 499, 932
BstF5I	GGATG	2 cut(s)	451, 652
BstFNI	CGCG	1 cut(s)	657
BstKTI	GATC	2 cut(s)	202, 452
BstMAI	GTCTC	2 cut(s)	329, 844
BstMBI	GATC	2 cut(s)	199, 449
BstMWI	GCNNNNNNNGC	1 cut(s)	813
BstNSI	RCATGY	1 cut(s)	924
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	3 cut(s)	112, 169, 172
BstV2I	GAAGAC	2 cut(s)	291, 485
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	816
BtgZI	GCGATG	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	451, 652
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	3 cut(s)	135, 429, 842
Cac8I	GCNNGC	1 cut(s)	471
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	772
Csp6I	GTAC	5 cut(s)	258, 427, 651, 733, 766
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	4 cut(s)	538, 584, 710, 921
CviQI	GTAC	5 cut(s)	258, 427, 651, 733, 766
DdeI	CTNAG	5 cut(s)	267, 318, 366, 499, 932
DpnI	GATC	2 cut(s)	201, 451
DpnII	GATC	2 cut(s)	199, 449
Eam1104I	CTCTTC	2 cut(s)	351, 585
EarI	CTCTTC	2 cut(s)	351, 585
Eco31I	GGTCTC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	4 cut(s)	541, 587, 713, 924
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	4 cut(s)	537, 583, 709, 920
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	126, 183, 186
FokI	GGATG	2 cut(s)	458, 659
Fsp4HI	GCNGC	3 cut(s)	126, 183, 186
GluI	GCNGC	3 cut(s)	126, 183, 186
HaeIII	GGCC	1 cut(s)	816
Hin1II	CATG	4 cut(s)	541, 587, 713, 924
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	34, 222
HphI	GGTGA	2 cut(s)	416, 520
Hpy166II	GTNNAC	4 cut(s)	172, 427, 653, 735
Hpy188I	TCNGA	5 cut(s)	227, 321, 490, 552, 762
Hpy188III	TCNNGA	2 cut(s)	514, 644
Hpy8I	GTNNAC	4 cut(s)	172, 427, 653, 735
HpyAV	CCTTC	2 cut(s)	115, 429
HpyCH4III	ACNGT	7 cut(s)	148, 215, 424, 484, 684, 846, 883
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	4 cut(s)	128, 677, 713, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	813
HpyF3I	CTNAG	5 cut(s)	267, 318, 366, 499, 932
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	4 cut(s)	541, 587, 713, 924
Kzo9I	GATC	2 cut(s)	199, 449
LguI	GCTCTTC	1 cut(s)	585
LmnI	GCTCC	1 cut(s)	580
LpnPI	CCDG	8 cut(s)	41, 122, 279, 288, 415, 629, 723, 924
Lsp1109I	GCAGC	3 cut(s)	112, 169, 172
LweI	GCATC	1 cut(s)	556
MaeII	ACGT	1 cut(s)	731
MaeIII	GTNAC	1 cut(s)	877
MalI	GATC	2 cut(s)	201, 451
MbiI	CCGCTC	1 cut(s)	595
MboI	GATC	2 cut(s)	199, 449
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	449
MhlI	GDGCHC	1 cut(s)	528
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	4 cut(s)	24, 30, 221, 400
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	1 cut(s)	937
MslI	CAYNNNNRTG	2 cut(s)	645, 740
MunI	CAATTG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	657
MwoI	GCNNNNNNNGC	1 cut(s)	813
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	2 cut(s)	199, 449
NlaIII	CATG	4 cut(s)	541, 587, 713, 924
NspI	RCATGY	1 cut(s)	924
NspV	TTCGAA	1 cut(s)	160
PciI	ACATGT	1 cut(s)	920
PciSI	GCTCTTC	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	34, 222
PkrI	GCNGC	3 cut(s)	127, 184, 187
Ppu21I	YACGTR	1 cut(s)	732
PscI	ACATGT	1 cut(s)	920
PspPI	GGNCC	1 cut(s)	772
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	449
RsaI	GTAC	5 cut(s)	259, 428, 652, 734, 767
RsaNI	GTAC	5 cut(s)	258, 427, 651, 733, 766
RseI	CAYNNNNRTG	2 cut(s)	645, 740
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	1 cut(s)	937
SatI	GCNGC	3 cut(s)	126, 183, 186
Sau3AI	GATC	2 cut(s)	199, 449
Sau96I	GGNCC	1 cut(s)	772
ScaI	AGTACT	2 cut(s)	259, 767
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	160
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	2 cut(s)	645, 740
SmlI	CTYRAG	2 cut(s)	284, 387
SmoI	CTYRAG	2 cut(s)	284, 387
SsiI	CCGC	2 cut(s)	595, 657
TaaI	ACNGT	7 cut(s)	148, 215, 424, 484, 684, 846, 883
TaiI	ACGT	1 cut(s)	734
TaqI	TCGA	1 cut(s)	160
TatI	WGTACW	3 cut(s)	257, 426, 765
TfiI	GAWTC	2 cut(s)	34, 222
Tru1I	TTAA	1 cut(s)	937
Tru9I	TTAA	1 cut(s)	937
TscAI	CASTG	3 cut(s)	135, 429, 849
TseI	GCWGC	3 cut(s)	125, 182, 185
TspDTI	ATGAA	6 cut(s)	17, 134, 225, 534, 739, 745
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	3 cut(s)	135, 429, 849
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	2 cut(s)	343, 553
XceI	RCATGY	1 cut(s)	924
XmnI	GAANNNNTTC	1 cut(s)	100
ZrmI	AGTACT	2 cut(s)	259, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.