Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Reverse (-)

67950675 .. 67952488

Gene Structure 1814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG487200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCTCGAAACCATTTGCAGACAGTATCTGACAAGCTCTTAGCATTGGAGTTCAAGAATGAAGTACTCACCTTGTCCATGATTGAGCATCTGAATTTGGTAAGATTATATGGATATTTGGAGCATGGGGACGAGCGGATTATTTTGGTTGAATATGTTGGCAACGGAACACTACGGGAACATCTGGATGGTACACGCGGAAATGGACTTGAAATTGCAGAACGGTTAGACATCGCAATTGATGTGGCTCATGCAATTACCTATCTTCACACGTACACAGATAGTCTTCACATGTTTGTGTATAGCATAAAGCTGATCGAGTCACATCAGTCCAGCTCTAGTAACAACCACCTTGCTCCTGGTGTTCCAGTTGCACATGAAACATTCATCAAATTAAACCGCTGTAGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

137

Amino Acids

15.47

Weight (kDa)

5.88

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	15 - 91	1.6e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	17 - 91	9.1e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	136
AccII	CGCG	1 cut(s)	198
AciI	CCGC	3 cut(s)	136, 198, 400
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	3 cut(s)	66, 193, 275
AflIII	ACRYGT	2 cut(s)	270, 291
AgsI	TTSAA	3 cut(s)	55, 152, 212
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	37, 313, 336
AluI	AGCT	3 cut(s)	37, 313, 336
Alw26I	GTCTC	1 cut(s)	9
AlwNI	CAGNNNCTG	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	278
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	403
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	278
BsaAI	YACGTR	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	3 cut(s)	136, 198, 400
BspFNI	CGCG	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	368
BssMI	GATC	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	25, 225
BstBAI	YACGTR	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	29
Csp6I	GTAC	3 cut(s)	65, 192, 274
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	5 cut(s)	79, 125, 251, 292, 377
CviJI	RGCY	4 cut(s)	37, 248, 313, 336
CviKI_1	RGCY	4 cut(s)	37, 248, 313, 336
CviQI	GTAC	3 cut(s)	65, 192, 274
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	358
FaeI	CATG	5 cut(s)	82, 128, 254, 295, 380
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	5 cut(s)	78, 124, 250, 291, 376
FokI	GGATG	1 cut(s)	200
FspBI	CTAG	1 cut(s)	339
Hin1II	CATG	5 cut(s)	82, 128, 254, 295, 380
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	194, 276
Hpy188I	TCNGA	2 cut(s)	31, 93
Hpy188III	TCNNGA	3 cut(s)	6, 55, 185
Hpy8I	GTNNAC	2 cut(s)	194, 276
HpyCH4III	ACNGT	2 cut(s)	25, 225
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	5 cut(s)	19, 218, 254, 374, 410
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	5 cut(s)	82, 128, 254, 295, 380
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	121, 361
LpnPI	CCDG	5 cut(s)	170, 345, 346, 372, 381
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	321, 341
MalI	GATC	1 cut(s)	317
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	1 cut(s)	315
MboII	GAAGA	2 cut(s)	257, 278
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	5 cut(s)	94, 213, 237, 255, 392
MlyI	GAGTC	1 cut(s)	329
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	2 cut(s)	186, 296
MspA1I	CMGCKG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	198
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	5 cut(s)	82, 128, 254, 295, 380
NmuCI	GTSAC	1 cut(s)	321
NspI	RCATGY	1 cut(s)	295
PciI	ACATGT	1 cut(s)	291
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	273
PscI	ACATGT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	29
RsaI	GTAC	3 cut(s)	66, 193, 275
RsaNI	GTAC	3 cut(s)	65, 192, 274
RseI	CAYNNNNRTG	2 cut(s)	186, 296
SaqAI	TTAA	1 cut(s)	395
Sau3AI	GATC	1 cut(s)	315
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	7 cut(s)	39, 74, 263, 275, 315, 338, 354
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	2 cut(s)	186, 296
Sse9I	AATT	5 cut(s)	94, 213, 237, 255, 392
SsiI	CCGC	3 cut(s)	136, 198, 400
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	25, 225
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	7, 318
TasI	AATT	5 cut(s)	94, 213, 237, 255, 392
TatI	WGTACW	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	3 cut(s)	75, 376, 393
TspGWI	ACGGA	1 cut(s)	180
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.