Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Reverse (-)

73465618 .. 73469269

Gene Structure 3652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGAAGAAAGCTCAAAGTCCTCATAACCAGAGGAATCAGTTTTCCAATTTTCACTTTGAAGATGACAAGAATAATAAAACCAAGCAACAGAGTGGAAGCCGTTCTGCCCTGAAGCATATGAGGGCTGCAGTGAAGAAAGTTTTCACAGTTCTTTTCTTTCGAAGAAAGGTCAACTCAAAGGCTGCTGCTTCTGTAATTGATCCAAGAAGAAACAGTAATAGAATCAGAGGAGTTTCATCTTCAACCGATGGTTGGAGTACTGACACTAAGAACTCATCAAAGCTCAAGTTATCTGGGTCTTCTGGTTCTTCTACTACTCAGATTGGAGTAATCATTGAGACGACAAATTTCTCCTACGAAGAGATTTCTAAGGCAACCGAAAAGTTCTCTCAAGCAAATAAAATTGGTGAGGGTGCTTTTGGGACGGTGTACAGGGGAAGGCTCGGGGACGGATCTCTTGTTGCTGTAAAGCGTGCCAAGAAGACAGTATCTGACAAGCTTTTAGCATTGGAGTTCAAGAATGAAGTACTCACCTTGTCCATGATTGAGCATCTGAATTTGGTAAGATTATATGGATATTTGGAGCATGGGGACGAGCGGATTATTTTGGTTGAATATGTTGGCAACGGAACACTACGGGAACATCTGGATGGTACACGCGGAAATGGACTTGAAATTGCAGAACGGTTAGACATCGCAATTGATGTGGCTCATGCAATTACCTATCTTCACACGTACACAGATCCTCCAATAATCCACAGAGACATAAAATCATTAAACATCCTCATCACAGAGAAATTACGGGCGAAAGTAGCAGACTTTGGGTTTGCACGGTTGTCTGCAGACCCTAATGCAACTCATATTTCAACTCAGATTAAAGGAACGGCAGGCTACTTGGATCCTGAGTACCTCAAGACTTATCAGCTCACCGAAAAGAGTGATGTTTACTCCTTTGGTGTGTTGCTTGTAGAACTGATGACAGGAAGACGACCCATTGAACCCAGCAAACCAAACAATGAAAGATTAACAACAAGATGGGCAATCCAAACATTGAAACGAGGAGAAGCTATACTAGTCATGGATCCAAGGCTACGGAGAAGTGCGGCATCAACCATGGCAATGGAGAAAATCCTCAAGCTAGCTCACGAGTGCCTTGCACCTTTAAGACAATCAAGACCCTCCATGAAAAAATGTGCTGAAGTATTATGGGGGATTCGCAAGGAATTCAGAGAGAAAGCCTTCCCTGCTCCTCCTTCAACTTCTCACTACTCTGACAATTTTCCTGTGAGAGATGCTAAGGTGACCAGGCAGCAGACTTTTGGAATTGAAGATGGTGATAGCTATAAATTTATCTCAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

453

Amino Acids

50.83

Weight (kDa)

9.75

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	130 - 403	8.6e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	131 - 402	1.7e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	598
AccII	CGCG	1 cut(s)	660
AciI	CCGC	3 cut(s)	598, 660, 1103
AclWI	GGATC	7 cut(s)	194, 460, 737, 893, 906, 1076, 1089
AcsI	RAATTY	4 cut(s)	346, 556, 1223, 1346
AcuI	CTGAAG	2 cut(s)	131, 1218
AfaI	GTAC	6 cut(s)	259, 431, 528, 655, 737, 908
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflIII	ACRYGT	1 cut(s)	732
AhlI	ACTAGT	1 cut(s)	1072
AjnI	CCWGG	1 cut(s)	1304
AluBI	AGCT	8 cut(s)	11, 283, 499, 925, 1067, 1138, 1142, 1341
AluI	AGCT	8 cut(s)	11, 283, 499, 925, 1067, 1138, 1142, 1341
Alw26I	GTCTC	2 cut(s)	332, 756
AlwI	GGATC	7 cut(s)	194, 460, 737, 893, 906, 1076, 1089
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	443
ApeKI	GCWGC	4 cut(s)	125, 182, 185, 1309
ApoI	RAATTY	4 cut(s)	346, 556, 1223, 1346
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
Asp700I	GAANNNNTTC	3 cut(s)	100, 140, 1238
AsuHPI	GGTGA	5 cut(s)	419, 523, 919, 1312, 1346
AsuII	TTCGAA	1 cut(s)	160
AsuNHI	GCTAGC	1 cut(s)	1138
AvaI	CYCGRG	1 cut(s)	443
BamHI	GGATCC	2 cut(s)	898, 1081
BauI	CACGAG	1 cut(s)	1145
BbsI	GAAGAC	3 cut(s)	291, 488, 991
BbvI	GCAGC	4 cut(s)	112, 169, 172, 1321
BccI	CCATC	4 cut(s)	242, 644, 1029, 1325
BceAI	ACGGC	2 cut(s)	84, 900
BcgI	CGANNNNNNTGC	2 cut(s)	1136, 1170
BciT130I	CCWGG	1 cut(s)	1306
BcoDI	GTCTC	2 cut(s)	332, 756
BcuI	ACTAGT	1 cut(s)	1072
BfaI	CTAG	2 cut(s)	1073, 1139
BfmI	CTRYAG	2 cut(s)	126, 840
BisI	GCNGC	5 cut(s)	126, 183, 186, 1104, 1310
BlsI	GCNGC	5 cut(s)	127, 184, 187, 1105, 1311
BmcAI	AGTACT	2 cut(s)	259, 528
Bme1390I	CCNGG	1 cut(s)	1306
BmeT110I	CYCGRG	1 cut(s)	443
BmiI	GGNNCC	2 cut(s)	900, 1083
BmrFI	CCNGG	1 cut(s)	1306
BmsI	GCATC	3 cut(s)	559, 1115, 1282
BmtI	GCTAGC	1 cut(s)	1142
BpiI	GAAGAC	3 cut(s)	291, 488, 991
Bpu10I	CCTNAGC	1 cut(s)	1296
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	4 cut(s)	269, 375, 896, 1118
BsaAI	YACGTR	1 cut(s)	735
BsaJI	CCNNGG	2 cut(s)	1085, 1113
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	1125
BseBI	CCWGG	1 cut(s)	1306
BseDI	CCNNGG	2 cut(s)	1085, 1113
BseGI	GGATG	2 cut(s)	655, 780
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	1125
BseMII	CTCAG	3 cut(s)	332, 884, 894
BseRI	GAGGAG	3 cut(s)	243, 1074, 1239
BseXI	GCAGC	4 cut(s)	112, 169, 172, 1321
BseYI	CCCAGC	1 cut(s)	1001
Bsh1236I	CGCG	1 cut(s)	660
BsiHKCI	CYCGRG	1 cut(s)	443
BslFI	GGGAC	3 cut(s)	436, 461, 605
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	332, 756
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	3 cut(s)	436, 461, 605
BsoBI	CYCGRG	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	5 cut(s)	199, 452, 742, 898, 1081
Bsp19I	CCATGG	1 cut(s)	1113
BspACI	CCGC	3 cut(s)	598, 660, 1103
BspCNI	CTCAG	3 cut(s)	331, 883, 895
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	2 cut(s)	900, 1083
BspMAI	CTGCAG	2 cut(s)	130, 844
BspOI	GCTAGC	1 cut(s)	1142
BspPI	GGATC	7 cut(s)	194, 460, 737, 893, 906, 1076, 1089
BspT104I	TTCGAA	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	1125
BsrGI	TGTACA	1 cut(s)	429
BssECI	CCNNGG	2 cut(s)	1085, 1113
BssMI	GATC	5 cut(s)	199, 452, 742, 898, 1081
BssSI	CACGAG	1 cut(s)	1145
BssT1I	CCWWGG	2 cut(s)	1085, 1113
Bst2BI	CACGAG	1 cut(s)	1145
Bst2UI	CCWGG	1 cut(s)	1306
Bst4CI	ACNGT	6 cut(s)	148, 215, 427, 487, 687, 834
Bst6I	CTCTTC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	735
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	474, 889, 1140
BstDEI	CTNAG	7 cut(s)	267, 318, 369, 870, 903, 1296, 1354
BstDSI	CCRYGG	1 cut(s)	1113
BstEII	GGTNACC	1 cut(s)	1300
BstF5I	GGATG	2 cut(s)	655, 780
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	5 cut(s)	202, 455, 745, 901, 1084
BstMAI	GTCTC	2 cut(s)	332, 756
BstMBI	GATC	5 cut(s)	199, 452, 742, 898, 1081
BstMWI	GCNNNNNNNGC	2 cut(s)	812, 1244
BstNI	CCWGG	1 cut(s)	1306
BstPI	GGTNACC	1 cut(s)	1300
BstSCI	CCNGG	1 cut(s)	1304
BstSFI	CTRYAG	2 cut(s)	126, 840
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	4 cut(s)	112, 169, 172, 1321
BstV2I	GAAGAC	3 cut(s)	291, 488, 991
BstX2I	RGATCY	4 cut(s)	452, 742, 898, 1081
BstXI	CCANNNNNNTGG	1 cut(s)	1120
BstYI	RGATCY	4 cut(s)	452, 742, 898, 1081
BtgI	CCRYGG	1 cut(s)	1113
BtgZI	GCGATG	1 cut(s)	679
BtsCI	GGATG	2 cut(s)	655, 780
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	474, 889, 1140
CaiI	CAGNNNCTG	1 cut(s)	491
Csp6I	GTAC	6 cut(s)	258, 430, 527, 654, 736, 907
CspCI	CAANNNNNGTGG	2 cut(s)	687, 722
CviAII	CATG	6 cut(s)	541, 587, 713, 1078, 1114, 1183
CviQI	GTAC	6 cut(s)	258, 430, 527, 654, 736, 907
DdeI	CTNAG	7 cut(s)	267, 318, 369, 870, 903, 1296, 1354
DpnI	GATC	5 cut(s)	201, 454, 744, 900, 1083
DpnII	GATC	5 cut(s)	199, 452, 742, 898, 1081
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	1085, 1113
Eco57I	CTGAAG	2 cut(s)	131, 1218
Eco88I	CYCGRG	1 cut(s)	443
Eco91I	GGTNACC	1 cut(s)	1300
EcoO65I	GGTNACC	1 cut(s)	1300
EcoRI	GAATTC	1 cut(s)	1223
EcoRII	CCWGG	1 cut(s)	1304
EcoT14I	CCWWGG	2 cut(s)	1085, 1113
ErhI	CCWWGG	2 cut(s)	1085, 1113
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	6 cut(s)	544, 590, 716, 1081, 1117, 1186
FaqI	GGGAC	3 cut(s)	436, 461, 605
FatI	CATG	6 cut(s)	540, 586, 712, 1077, 1113, 1182
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	5 cut(s)	126, 183, 186, 1104, 1310
FokI	GGATG	2 cut(s)	662, 767
Fsp4HI	GCNGC	5 cut(s)	126, 183, 186, 1104, 1310
FspBI	CTAG	2 cut(s)	1073, 1139
GluI	GCNGC	5 cut(s)	126, 183, 186, 1104, 1310
GsaI	CCCAGC	1 cut(s)	1005
Hin1II	CATG	6 cut(s)	544, 590, 716, 1081, 1117, 1186
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	3 cut(s)	34, 222, 1213
HphI	GGTGA	5 cut(s)	419, 523, 919, 1312, 1346
Hpy166II	GTNNAC	5 cut(s)	172, 430, 656, 738, 946
Hpy188I	TCNGA	7 cut(s)	227, 321, 493, 555, 873, 1229, 1273
Hpy188III	TCNNGA	6 cut(s)	517, 647, 902, 913, 1145, 1173
Hpy8I	GTNNAC	5 cut(s)	172, 430, 656, 738, 946
HpyAV	CCTTC	3 cut(s)	432, 1249, 1263
HpyCH4III	ACNGT	6 cut(s)	148, 215, 427, 487, 687, 834
HpyCH4IV	ACGT	1 cut(s)	734
HpyCH4V	TGCA	7 cut(s)	128, 680, 716, 830, 842, 854, 1157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	812, 1244
HpyF3I	CTNAG	7 cut(s)	267, 318, 369, 870, 903, 1296, 1354
HpySE526I	ACGT	1 cut(s)	734
Hsp92II	CATG	6 cut(s)	544, 590, 716, 1081, 1117, 1186
Kzo9I	GATC	5 cut(s)	199, 452, 742, 898, 1081
LmnI	GCTCC	2 cut(s)	583, 1252
Lsp1109I	GCAGC	4 cut(s)	112, 169, 172, 1321
LweI	GCATC	3 cut(s)	559, 1115, 1282
MaeI	CTAG	2 cut(s)	1073, 1139
MaeII	ACGT	1 cut(s)	734
MaeIII	GTNAC	1 cut(s)	1300
MalI	GATC	5 cut(s)	201, 454, 744, 900, 1083
MbiI	CCGCTC	1 cut(s)	598
MboI	GATC	5 cut(s)	199, 452, 742, 898, 1081
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	4 cut(s)	452, 742, 898, 1081
MmeI	TCCRAC	1 cut(s)	233
MroXI	GAANNNNTTC	3 cut(s)	100, 140, 1238
MseI	TTAA	4 cut(s)	776, 876, 1025, 1163
MslI	CAYNNNNRTG	2 cut(s)	648, 1118
MspR9I	CCNGG	1 cut(s)	1306
MunI	CAATTG	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	1306
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	2 cut(s)	812, 1244
NcoI	CCATGG	1 cut(s)	1113
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	5 cut(s)	199, 452, 742, 898, 1081
NheI	GCTAGC	1 cut(s)	1138
NlaIII	CATG	6 cut(s)	544, 590, 716, 1081, 1117, 1186
NlaIV	GGNNCC	2 cut(s)	900, 1083
NmuCI	GTSAC	1 cut(s)	1300
NspV	TTCGAA	1 cut(s)	160
PdmI	GAANNNNTTC	3 cut(s)	100, 140, 1238
PfeI	GAWTC	3 cut(s)	34, 222, 1213
PkrI	GCNGC	5 cut(s)	127, 184, 187, 1105, 1311
Ppu21I	YACGTR	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	1304
PspEI	GGTNACC	1 cut(s)	1300
PspFI	CCCAGC	1 cut(s)	1001
PspGI	CCWGG	1 cut(s)	1304
PspN4I	GGNNCC	2 cut(s)	900, 1083
PstI	CTGCAG	2 cut(s)	130, 844
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	4 cut(s)	452, 742, 898, 1081
RsaI	GTAC	6 cut(s)	259, 431, 528, 655, 737, 908
RsaNI	GTAC	6 cut(s)	258, 430, 527, 654, 736, 907
RseI	CAYNNNNRTG	2 cut(s)	648, 1118
SaqAI	TTAA	4 cut(s)	776, 876, 1025, 1163
SatI	GCNGC	5 cut(s)	126, 183, 186, 1104, 1310
Sau3AI	GATC	5 cut(s)	199, 452, 742, 898, 1081
ScaI	AGTACT	2 cut(s)	259, 528
ScrFI	CCNGG	1 cut(s)	1306
SfaNI	GCATC	3 cut(s)	559, 1115, 1282
SfcI	CTRYAG	2 cut(s)	126, 840
SfuI	TTCGAA	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	648, 1118
SmlI	CTYRAG	4 cut(s)	284, 390, 911, 1133
SmoI	CTYRAG	4 cut(s)	284, 390, 911, 1133
SpeI	ACTAGT	1 cut(s)	1072
SsiI	CCGC	3 cut(s)	598, 660, 1103
SspMI	CTAG	2 cut(s)	1073, 1139
StyD4I	CCNGG	1 cut(s)	1304
StyI	CCWWGG	2 cut(s)	1085, 1113
TaaI	ACNGT	6 cut(s)	148, 215, 427, 487, 687, 834
TaiI	ACGT	1 cut(s)	737
TaqI	TCGA	1 cut(s)	160
TatI	WGTACW	3 cut(s)	257, 429, 526
TauI	GCSGC	1 cut(s)	1106
TfiI	GAWTC	3 cut(s)	34, 222, 1213
Tru1I	TTAA	4 cut(s)	776, 876, 1025, 1163
Tru9I	TTAA	4 cut(s)	776, 876, 1025, 1163
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	1300
TseI	GCWGC	4 cut(s)	125, 182, 185, 1309
Tsp45I	GTSAC	1 cut(s)	1300
TspDTI	ATGAA	5 cut(s)	17, 225, 537, 1032, 1199
TspGWI	ACGGA	3 cut(s)	465, 642, 1108
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	4 cut(s)	346, 556, 1223, 1346
XmnI	GAANNNNTTC	3 cut(s)	100, 140, 1238
XspI	CTAG	2 cut(s)	1073, 1139
ZrmI	AGTACT	2 cut(s)	259, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.