Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Reverse (-)

32475292 .. 32478817

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37911.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGAAGAAAGCACAGAGTCCTTACAACCAGAGGAATCAGTTCTCCAATTTTCACTTTGAAGATGACAGGAATAATAAAACCAAGCAACAAAGTGGAAGCTATTCTGCCCTGAAGAATATCAAGGCTGCAGTGAAGAAAGTTTTCACAGTTCTTCTCTTTCGAAGAAAGGTCAACTCAAAGGCTGCTGCTTCTGTAATTGATCCAAGAAGAAACAGTAATAGGATCAGAGGAGTTTCCTCTTCAACCGATCGTTCATCAGGGAGTACAGACACTAAGAACTCATCAAAGTTCAAGTCATCTGGGTCTTATGGTTCTTCTACTACTCTGAGTGGGATAATTGAGACGAAATATTTCTCCTACGAAGAGATTTCCAAGGCAACTGAAAAGTTCTCTCAAGCAAATATAATTGGTGAGGGCGGTTTTGGGATAGTGTACAGGGGAAGGCTTGGGGATGGATCTCTTGTTGCTGTAAAGCGTGCCAGGAAGACAGGTTCTGACAAGCTCTTACAATTGGAGTTCAAGAATGAAATACTCACCTTATCCATGATTGAGCATCTGAATTTGGTGAGATTATATGGGTATTTGGAGCATGGGGATGAGCGGATTATTTTGGTCGAATATGTTGGCAACGGAACACTACGGGAACATCTAGATGGTACACGCGGAAATGGACTTGAAATTGCAGAACGTTTAGACATTGCAATTGATGTGGCTCATGCAATTACCTACCTTCACATGTACACAGATCCTCCAATAATCCACAGAGACATAAAATCATTAAACATCCTCATCACAGAGAAATTACGGGCGAAAGTAGCGGACTTTGGGTTTGCACGGTTGTCGGCAGACTCTGATGCAACTCACATTTCAACTCAGGTTAAAGGAACGGCAGGCTACTTGGATCCTGAGTACCTCAAGACTTACCAGCTTACCGAAAAGAGTGATGTTTACTCCTTTGGTGTGTTGCTTGTAGAACTGATGACAGGAAGACGACCAATCGAACCCAACAAGCCACACAACGAAAGATTAACAACTAGATGGGCATTCCAAACATTAAAACGAGGAGAAGCTGTACTTGTCATGGATCCAAGGCTACGGAGAAACGCAGCATCAACCATGGCAATGGAGAAAATCCTGAGGCTAGCTCACGAGTGCCTTGCACCTTTAAGACAGTCAAGACCCTCCATGAAAAAATGTGGTGAGGTATTATGGGGGATTCGCAAGGAATATAGACAGGTAGCCTTCCCTCCTCCCCCAACTTCTCATTACTCTGCCAATTTTCCTGTGAGAGATCCTAAGATGACTAGGCAGCAGACATTTGGAATCGAAGATGATGACAACTACAAGTTTGTCTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

454

Amino Acids

51.12

Weight (kDa)

9.69

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	131 - 342	4.2e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	133 - 338	1.1e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	601
AccII	CGCG	1 cut(s)	663
AciI	CCGC	4 cut(s)	417, 601, 663, 818
AclI	AACGTT	1 cut(s)	688
AclWI	GGATC	9 cut(s)	194, 230, 463, 740, 896, 909, 1079, 1092, 1286
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	6 cut(s)	265, 434, 658, 740, 911, 1074
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	6 cut(s)	59, 243, 292, 520, 677, 870
AjnI	CCWGG	1 cut(s)	479
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	5 cut(s)	99, 502, 928, 1070, 1145
AluI	AGCT	5 cut(s)	99, 502, 928, 1070, 1145
Alw26I	GTCTC	3 cut(s)	335, 759, 1357
AlwI	GGATC	9 cut(s)	194, 230, 463, 740, 896, 909, 1079, 1092, 1286
AlwNI	CAGNNNCTG	2 cut(s)	494, 851
ApeKI	GCWGC	5 cut(s)	125, 182, 185, 1106, 1309
ApoI	RAATTY	1 cut(s)	559
ArsI	GACNNNNNNTTYG	4 cut(s)	278, 310, 812, 844
Asp700I	GAANNNNTTC	4 cut(s)	38, 100, 140, 350
AsuHPI	GGTGA	4 cut(s)	422, 526, 577, 1211
AsuII	TTCGAA	1 cut(s)	160
AsuNHI	GCTAGC	1 cut(s)	1141
AxyI	CCTNAGG	1 cut(s)	1136
BamHI	GGATCC	2 cut(s)	901, 1084
BauI	CACGAG	1 cut(s)	1148
BbsI	GAAGAC	2 cut(s)	491, 994
BbvI	GCAGC	5 cut(s)	112, 169, 172, 1118, 1321
BccI	CCATC	3 cut(s)	446, 647, 1032
BceAI	ACGGC	1 cut(s)	903
BcgI	CGANNNNNNTGC	4 cut(s)	822, 856, 1139, 1173
BciT130I	CCWGG	1 cut(s)	481
BcoDI	GTCTC	3 cut(s)	335, 759, 1357
BfaI	CTAG	4 cut(s)	650, 1035, 1142, 1305
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	5 cut(s)	126, 183, 186, 1107, 1310
BlsI	GCNGC	5 cut(s)	127, 184, 187, 1108, 1311
Bme1390I	CCNGG	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	903, 1086
BmrFI	CCNGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	562, 844, 1118
BmtI	GCTAGC	1 cut(s)	1145
BpiI	GAAGAC	2 cut(s)	491, 994
BplI	GAGNNNNNCTC	2 cut(s)	1129, 1161
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	2 cut(s)	378, 899
BsaJI	CCNNGG	3 cut(s)	372, 1088, 1116
BsaXI	ACNNNNNCTCC	4 cut(s)	733, 763, 1056, 1086
Bse21I	CCTNAGG	1 cut(s)	1136
Bse3DI	GCAATG	2 cut(s)	696, 1128
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	3 cut(s)	372, 1088, 1116
BseGI	GGATG	3 cut(s)	457, 601, 783
BseMI	GCAATG	2 cut(s)	696, 1128
BseMII	CTCAG	4 cut(s)	317, 887, 897, 1127
BseRI	GAGGAG	3 cut(s)	243, 1077, 1239
BseXI	GCAGC	5 cut(s)	112, 169, 172, 1118, 1321
Bsh1236I	CGCG	1 cut(s)	663
Bsh1285I	CGRYCG	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	250
BsmAI	GTCTC	3 cut(s)	335, 759, 1357
BsmBI	CGTCTC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	1043
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1407I	TGTACA	2 cut(s)	432, 738
Bsp143I	GATC	8 cut(s)	199, 222, 247, 455, 745, 901, 1084, 1291
Bsp19I	CCATGG	1 cut(s)	1116
BspACI	CCGC	4 cut(s)	417, 601, 663, 818
BspCNI	CTCAG	4 cut(s)	318, 886, 898, 1128
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	2 cut(s)	903, 1086
BspMAI	CTGCAG	1 cut(s)	130
BspOI	GCTAGC	1 cut(s)	1145
BspPI	GGATC	9 cut(s)	194, 230, 463, 740, 896, 909, 1079, 1092, 1286
BspT104I	TTCGAA	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	601
BsrDI	GCAATG	2 cut(s)	696, 1128
BsrGI	TGTACA	2 cut(s)	432, 738
BssECI	CCNNGG	3 cut(s)	372, 1088, 1116
BssMI	GATC	8 cut(s)	199, 222, 247, 455, 745, 901, 1084, 1291
BssSI	CACGAG	1 cut(s)	1148
BssT1I	CCWWGG	3 cut(s)	372, 1088, 1116
Bst2BI	CACGAG	1 cut(s)	1148
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	4 cut(s)	148, 215, 837, 1173
Bst6I	CTCTTC	2 cut(s)	244, 357
BstAUI	TGTACA	2 cut(s)	432, 738
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	477, 892, 1143
BstDEI	CTNAG	6 cut(s)	273, 326, 873, 906, 1136, 1296
BstDSI	CCRYGG	1 cut(s)	1116
BstF5I	GGATG	3 cut(s)	457, 601, 783
BstFNI	CGCG	1 cut(s)	663
BstKTI	GATC	8 cut(s)	202, 225, 250, 458, 748, 904, 1087, 1294
BstMAI	GTCTC	3 cut(s)	335, 759, 1357
BstMBI	GATC	8 cut(s)	199, 222, 247, 455, 745, 901, 1084, 1291
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	815
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	5 cut(s)	112, 169, 172, 1118, 1321
BstV2I	GAAGAC	2 cut(s)	491, 994
BstX2I	RGATCY	5 cut(s)	455, 745, 901, 1084, 1291
BstXI	CCANNNNNNTGG	1 cut(s)	1123
BstYI	RGATCY	5 cut(s)	455, 745, 901, 1084, 1291
Bsu36I	CCTNAGG	1 cut(s)	1136
BtgI	CCRYGG	1 cut(s)	1116
BtsCI	GGATG	3 cut(s)	457, 601, 783
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	477, 892, 1143
CaiI	CAGNNNCTG	2 cut(s)	494, 851
Csp6I	GTAC	6 cut(s)	264, 433, 657, 739, 910, 1073
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	7 cut(s)	544, 590, 716, 736, 1081, 1117, 1186
CviQI	GTAC	6 cut(s)	264, 433, 657, 739, 910, 1073
DdeI	CTNAG	6 cut(s)	273, 326, 873, 906, 1136, 1296
DpnI	GATC	8 cut(s)	201, 224, 249, 457, 747, 903, 1086, 1293
DpnII	GATC	8 cut(s)	199, 222, 247, 455, 745, 901, 1084, 1291
Eam1104I	CTCTTC	2 cut(s)	244, 357
EarI	CTCTTC	2 cut(s)	244, 357
Eco130I	CCWWGG	3 cut(s)	372, 1088, 1116
Eco57I	CTGAAG	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	1136
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	3 cut(s)	372, 1088, 1116
ErhI	CCWWGG	3 cut(s)	372, 1088, 1116
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	7 cut(s)	547, 593, 719, 739, 1084, 1120, 1189
FalI	AAGNNNNNCTT	2 cut(s)	1059, 1091
FatI	CATG	7 cut(s)	543, 589, 715, 735, 1080, 1116, 1185
Fnu4HI	GCNGC	5 cut(s)	126, 183, 186, 1107, 1310
FokI	GGATG	3 cut(s)	464, 608, 770
Fsp4HI	GCNGC	5 cut(s)	126, 183, 186, 1107, 1310
FspBI	CTAG	4 cut(s)	650, 1035, 1142, 1305
GluI	GCNGC	5 cut(s)	126, 183, 186, 1107, 1310
Hin1II	CATG	7 cut(s)	547, 593, 719, 739, 1084, 1120, 1189
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	5 cut(s)	16, 34, 848, 1216, 1323
HphI	GGTGA	4 cut(s)	422, 526, 577, 1211
Hpy166II	GTNNAC	5 cut(s)	172, 433, 659, 741, 949
Hpy188I	TCNGA	5 cut(s)	227, 327, 496, 558, 853
Hpy188III	TCNNGA	7 cut(s)	520, 650, 905, 916, 1135, 1148, 1176
Hpy8I	GTNNAC	5 cut(s)	172, 433, 659, 741, 949
HpyAV	CCTTC	3 cut(s)	435, 740, 1252
HpyCH4III	ACNGT	4 cut(s)	148, 215, 837, 1173
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	8 cut(s)	128, 683, 701, 719, 833, 857, 1160, 1358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	815
HpyF3I	CTNAG	6 cut(s)	273, 326, 873, 906, 1136, 1296
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	7 cut(s)	547, 593, 719, 739, 1084, 1120, 1189
Kzo9I	GATC	8 cut(s)	199, 222, 247, 455, 745, 901, 1084, 1291
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	5 cut(s)	112, 169, 172, 1118, 1321
LweI	GCATC	3 cut(s)	562, 844, 1118
MaeI	CTAG	4 cut(s)	650, 1035, 1142, 1305
MaeII	ACGT	1 cut(s)	688
MalI	GATC	8 cut(s)	201, 224, 249, 457, 747, 903, 1086, 1293
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	8 cut(s)	199, 222, 247, 455, 745, 901, 1084, 1291
MfeI	CAATTG	2 cut(s)	509, 702
MflI	RGATCY	5 cut(s)	455, 745, 901, 1084, 1291
MlyI	GAGTC	2 cut(s)	25, 842
MroXI	GAANNNNTTC	4 cut(s)	38, 100, 140, 350
MseI	TTAA	5 cut(s)	779, 879, 1028, 1055, 1166
MslI	CAYNNNNRTG	3 cut(s)	594, 651, 1121
MspR9I	CCNGG	1 cut(s)	481
MunI	CAATTG	2 cut(s)	509, 702
Mva1269I	GAATGC	1 cut(s)	1043
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	1 cut(s)	815
NcoI	CCATGG	1 cut(s)	1116
NdeII	GATC	8 cut(s)	199, 222, 247, 455, 745, 901, 1084, 1291
NheI	GCTAGC	1 cut(s)	1141
NlaIII	CATG	7 cut(s)	547, 593, 719, 739, 1084, 1120, 1189
NlaIV	GGNNCC	2 cut(s)	903, 1086
NspI	RCATGY	1 cut(s)	739
NspV	TTCGAA	1 cut(s)	160
PciI	ACATGT	1 cut(s)	735
PctI	GAATGC	1 cut(s)	1043
PdmI	GAANNNNTTC	4 cut(s)	38, 100, 140, 350
PfeI	GAWTC	3 cut(s)	34, 1216, 1323
PkrI	GCNGC	5 cut(s)	127, 184, 187, 1108, 1311
Ple19I	CGATCG	1 cut(s)	250
PleI	GAGTC	2 cut(s)	24, 842
PpsI	GAGTC	2 cut(s)	24, 842
PscI	ACATGT	1 cut(s)	735
Psp1406I	AACGTT	1 cut(s)	688
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	903, 1086
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	2 cut(s)	494, 851
PsuI	RGATCY	5 cut(s)	455, 745, 901, 1084, 1291
PvuI	CGATCG	1 cut(s)	250
RsaI	GTAC	6 cut(s)	265, 434, 658, 740, 911, 1074
RsaNI	GTAC	6 cut(s)	264, 433, 657, 739, 910, 1073
RseI	CAYNNNNRTG	3 cut(s)	594, 651, 1121
SaqAI	TTAA	5 cut(s)	779, 879, 1028, 1055, 1166
SatI	GCNGC	5 cut(s)	126, 183, 186, 1107, 1310
Sau3AI	GATC	8 cut(s)	199, 222, 247, 455, 745, 901, 1084, 1291
SchI	GAGTC	2 cut(s)	25, 842
ScrFI	CCNGG	1 cut(s)	481
SfaNI	GCATC	3 cut(s)	562, 844, 1118
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	160
SmiMI	CAYNNNNRTG	3 cut(s)	594, 651, 1121
SmlI	CTYRAG	2 cut(s)	393, 914
SmoI	CTYRAG	2 cut(s)	393, 914
SsiI	CCGC	4 cut(s)	417, 601, 663, 818
SspI	AATATT	1 cut(s)	350
SspMI	CTAG	4 cut(s)	650, 1035, 1142, 1305
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	3 cut(s)	372, 1088, 1116
TaaI	ACNGT	4 cut(s)	148, 215, 837, 1173
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	4 cut(s)	160, 615, 999, 1326
TatI	WGTACW	4 cut(s)	263, 432, 738, 1072
TfiI	GAWTC	3 cut(s)	34, 1216, 1323
Tru1I	TTAA	5 cut(s)	779, 879, 1028, 1055, 1166
Tru9I	TTAA	5 cut(s)	779, 879, 1028, 1055, 1166
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	5 cut(s)	125, 182, 185, 1106, 1309
TspDTI	ATGAA	4 cut(s)	17, 243, 540, 1202
TspGWI	ACGGA	2 cut(s)	645, 1111
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	559
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	739
XmnI	GAANNNNTTC	4 cut(s)	38, 100, 140, 350
XspI	CTAG	4 cut(s)	650, 1035, 1142, 1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.