Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012198.1

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Reverse (-)

11191 .. 14245

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012198.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atgaagaaagctcaaagtcctcataaccagaggaatcagttttccaattttcactttgaagatgacaagaataataaaaccaagcaacagagtggaagccgttctgccctgaagcatatgaaggctgcagtgaagaaagttttcacagttcttttctttcgaagaaaggtcaactcaaaggctgctgcttctgtaattgatccaagaagaaacagtaatagaatcagaggagtttcatcttcaaccgatggttggagtaccgacactaagaactcatcaaagctcaagttatctgggtcttctggttcttctactactcagattggagtaattgagacgacaaatttctcctacgaagagatttctaaggcaaccgaaaagttctctcaagcaaataaaattggtgagggtgcttttgggacagtgtacaggggaaggctcggggacggatctcttgttgctgtaaagcgtgccaagaagacagtatctgacaagctcttagcattggagttcaagaatgaagtactcaccttgtccatgattgagcatctgaatttggtaagattatatggatatttggagcatggggacgagcggattattttggttgaatatgttggcaacggaacactacgggaacatctggatggtacacgcggaaatggacttgaaattgcagaacggttagacatcgcaattgatgtggctcatgcaattacctatcttcacacgtacacagatcctccaataatccacagagacataaaatcattaaacatcctcatcacagagaaattacgggcgaaagtagcagactttgggtttgcacgattgtctgcagaccctaatgcaactcatatttcaactcagattaaaggaacggcaggctacttggatcctgagtacctcaagacttatcagctcaccgaaaagagtgatgtttactcctttggtgtgttgcttgtagaactgatgacaggaagacgacccatcgaacccagcaaaccaaacaatgaaagattaacaacaagatgggcaatccaaacattgaaacgaggagaagctatacttgtcatggatccaaggctacggagaagtgcggcatcaaccatggcaatggagaaaatcctcaagctagctcacgagtgccttgcacctctaagacaatcaagaccctccatgaaaaaatgtgctgaagtattatgggggattcgcaaggaattcagagagaaagccttccctgctcctcctccttcaacttctcactactctgacaattttcctgtgagagatgctaaggtgactaggcagcagacttttggaattgaagatggtgatagctataaatttatctcagcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

453

Amino Acids

50.78

Weight (kDa)

9.74

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	595
AccII	CGCG	1 cut(s)	657
AciI	CCGC	3 cut(s)	595, 657, 1100
AclWI	GGATC	7 cut(s)	194, 457, 734, 890, 903, 1073, 1086
AcsI	RAATTY	4 cut(s)	343, 553, 1220, 1346
AcuI	CTGAAG	2 cut(s)	131, 1215
AfaI	GTAC	6 cut(s)	259, 428, 525, 652, 734, 905
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	9 cut(s)	59, 243, 514, 611, 671, 864, 1051, 1257, 1328
AluBI	AGCT	8 cut(s)	11, 283, 496, 922, 1064, 1135, 1139, 1341
AluI	AGCT	8 cut(s)	11, 283, 496, 922, 1064, 1135, 1139, 1341
Alw26I	GTCTC	2 cut(s)	329, 753
AlwI	GGATC	7 cut(s)	194, 457, 734, 890, 903, 1073, 1086
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	125, 182, 185, 1309
ApoI	RAATTY	4 cut(s)	343, 553, 1220, 1346
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp700I	GAANNNNTTC	3 cut(s)	100, 140, 1235
AsuHPI	GGTGA	5 cut(s)	416, 520, 916, 1312, 1346
AsuII	TTCGAA	1 cut(s)	160
AsuNHI	GCTAGC	1 cut(s)	1135
AvaI	CYCGRG	1 cut(s)	440
BamHI	GGATCC	2 cut(s)	895, 1078
BauI	CACGAG	1 cut(s)	1142
BbsI	GAAGAC	3 cut(s)	291, 485, 988
BbvI	GCAGC	4 cut(s)	112, 169, 172, 1321
BccI	CCATC	5 cut(s)	242, 641, 998, 1026, 1325
BceAI	ACGGC	2 cut(s)	84, 897
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BcoDI	GTCTC	2 cut(s)	329, 753
BfaI	CTAG	2 cut(s)	1136, 1305
BfmI	CTRYAG	2 cut(s)	126, 837
BisI	GCNGC	5 cut(s)	126, 183, 186, 1101, 1310
BlsI	GCNGC	5 cut(s)	127, 184, 187, 1102, 1311
BmcAI	AGTACT	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	897, 1080
BmsI	GCATC	3 cut(s)	556, 1112, 1282
BmtI	GCTAGC	1 cut(s)	1139
BpiI	GAAGAC	3 cut(s)	291, 485, 988
Bpu10I	CCTNAGC	1 cut(s)	1296
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	4 cut(s)	269, 372, 893, 1115
BsaAI	YACGTR	1 cut(s)	732
BsaJI	CCNNGG	2 cut(s)	1082, 1110
BsaXI	ACNNNNNCTCC	2 cut(s)	727, 757
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	1122
BseDI	CCNNGG	2 cut(s)	1082, 1110
BseGI	GGATG	2 cut(s)	652, 777
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	3 cut(s)	332, 881, 891
BseRI	GAGGAG	4 cut(s)	243, 1071, 1236, 1239
BseXI	GCAGC	4 cut(s)	112, 169, 172, 1321
BseYI	CCCAGC	1 cut(s)	998
Bsh1236I	CGCG	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	3 cut(s)	433, 458, 602
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	329, 753
BsmBI	CGTCTC	1 cut(s)	329
BsmFI	GGGAC	3 cut(s)	433, 458, 602
BsoBI	CYCGRG	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	199, 449, 739, 895, 1078
Bsp19I	CCATGG	1 cut(s)	1110
BspACI	CCGC	3 cut(s)	595, 657, 1100
BspCNI	CTCAG	3 cut(s)	331, 880, 892
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	2 cut(s)	897, 1080
BspMAI	CTGCAG	2 cut(s)	130, 841
BspOI	GCTAGC	1 cut(s)	1139
BspPI	GGATC	7 cut(s)	194, 457, 734, 890, 903, 1073, 1086
BspT104I	TTCGAA	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	1122
BsrGI	TGTACA	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	1082, 1110
BssMI	GATC	5 cut(s)	199, 449, 739, 895, 1078
BssSI	CACGAG	1 cut(s)	1142
BssT1I	CCWWGG	2 cut(s)	1082, 1110
Bst2BI	CACGAG	1 cut(s)	1142
Bst4CI	ACNGT	5 cut(s)	148, 215, 424, 484, 684
Bst6I	CTCTTC	1 cut(s)	351
BstAUI	TGTACA	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	732
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	471, 886, 1137
BstDEI	CTNAG	9 cut(s)	267, 318, 366, 499, 867, 900, 1160, 1296, 1354
BstDSI	CCRYGG	1 cut(s)	1110
BstF5I	GGATG	2 cut(s)	652, 777
BstFNI	CGCG	1 cut(s)	657
BstKTI	GATC	5 cut(s)	202, 452, 742, 898, 1081
BstMAI	GTCTC	2 cut(s)	329, 753
BstMBI	GATC	5 cut(s)	199, 449, 739, 895, 1078
BstMWI	GCNNNNNNNGC	2 cut(s)	809, 1241
BstSFI	CTRYAG	2 cut(s)	126, 837
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	4 cut(s)	112, 169, 172, 1321
BstV2I	GAAGAC	3 cut(s)	291, 485, 988
BstX2I	RGATCY	4 cut(s)	449, 739, 895, 1078
BstXI	CCANNNNNNTGG	1 cut(s)	1117
BstYI	RGATCY	4 cut(s)	449, 739, 895, 1078
BtgI	CCRYGG	1 cut(s)	1110
BtgZI	GCGATG	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	652, 777
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 429
Cac8I	GCNNGC	3 cut(s)	471, 886, 1137
CaiI	CAGNNNCTG	1 cut(s)	488
Csp6I	GTAC	6 cut(s)	258, 427, 524, 651, 733, 904
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	6 cut(s)	538, 584, 710, 1075, 1111, 1180
CviQI	GTAC	6 cut(s)	258, 427, 524, 651, 733, 904
DdeI	CTNAG	9 cut(s)	267, 318, 366, 499, 867, 900, 1160, 1296, 1354
DpnI	GATC	5 cut(s)	201, 451, 741, 897, 1080
DpnII	GATC	5 cut(s)	199, 449, 739, 895, 1078
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	1082, 1110
Eco57I	CTGAAG	2 cut(s)	131, 1215
Eco88I	CYCGRG	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	1220
EcoT14I	CCWWGG	2 cut(s)	1082, 1110
ErhI	CCWWGG	2 cut(s)	1082, 1110
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	6 cut(s)	541, 587, 713, 1078, 1114, 1183
FalI	AAGNNNNNCTT	2 cut(s)	1053, 1085
FaqI	GGGAC	3 cut(s)	433, 458, 602
FatI	CATG	6 cut(s)	537, 583, 709, 1074, 1110, 1179
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	5 cut(s)	126, 183, 186, 1101, 1310
FokI	GGATG	2 cut(s)	659, 764
Fsp4HI	GCNGC	5 cut(s)	126, 183, 186, 1101, 1310
FspBI	CTAG	2 cut(s)	1136, 1305
GluI	GCNGC	5 cut(s)	126, 183, 186, 1101, 1310
GsaI	CCCAGC	1 cut(s)	1002
Hin1II	CATG	6 cut(s)	541, 587, 713, 1078, 1114, 1183
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	34, 222, 1210
HphI	GGTGA	5 cut(s)	416, 520, 916, 1312, 1346
Hpy166II	GTNNAC	5 cut(s)	172, 427, 653, 735, 943
Hpy188I	TCNGA	7 cut(s)	227, 321, 490, 552, 870, 1226, 1273
Hpy188III	TCNNGA	6 cut(s)	514, 644, 899, 910, 1142, 1170
Hpy8I	GTNNAC	5 cut(s)	172, 427, 653, 735, 943
HpyAV	CCTTC	4 cut(s)	115, 429, 1246, 1263
HpyCH4III	ACNGT	5 cut(s)	148, 215, 424, 484, 684
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	7 cut(s)	128, 677, 713, 827, 839, 851, 1154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	809, 1241
HpyF3I	CTNAG	9 cut(s)	267, 318, 366, 499, 867, 900, 1160, 1296, 1354
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	6 cut(s)	541, 587, 713, 1078, 1114, 1183
Kzo9I	GATC	5 cut(s)	199, 449, 739, 895, 1078
LmnI	GCTCC	2 cut(s)	580, 1249
Lsp1109I	GCAGC	4 cut(s)	112, 169, 172, 1321
LweI	GCATC	3 cut(s)	556, 1112, 1282
MaeI	CTAG	2 cut(s)	1136, 1305
MaeII	ACGT	1 cut(s)	731
MaeIII	GTNAC	1 cut(s)	1300
MalI	GATC	5 cut(s)	201, 451, 741, 897, 1080
MbiI	CCGCTC	1 cut(s)	595
MboI	GATC	5 cut(s)	199, 449, 739, 895, 1078
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	4 cut(s)	449, 739, 895, 1078
MmeI	TCCRAC	1 cut(s)	233
MroXI	GAANNNNTTC	3 cut(s)	100, 140, 1235
MseI	TTAA	3 cut(s)	773, 873, 1022
MslI	CAYNNNNRTG	2 cut(s)	645, 1115
MunI	CAATTG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	657
MwoI	GCNNNNNNNGC	2 cut(s)	809, 1241
NcoI	CCATGG	1 cut(s)	1110
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	5 cut(s)	199, 449, 739, 895, 1078
NheI	GCTAGC	1 cut(s)	1135
NlaIII	CATG	6 cut(s)	541, 587, 713, 1078, 1114, 1183
NlaIV	GGNNCC	2 cut(s)	897, 1080
NmuCI	GTSAC	1 cut(s)	1300
NspV	TTCGAA	1 cut(s)	160
PdmI	GAANNNNTTC	3 cut(s)	100, 140, 1235
PfeI	GAWTC	3 cut(s)	34, 222, 1210
PkrI	GCNGC	5 cut(s)	127, 184, 187, 1102, 1311
Ppu21I	YACGTR	1 cut(s)	732
PspFI	CCCAGC	1 cut(s)	998
PspN4I	GGNNCC	2 cut(s)	897, 1080
PstI	CTGCAG	2 cut(s)	130, 841
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	4 cut(s)	449, 739, 895, 1078
RsaI	GTAC	6 cut(s)	259, 428, 525, 652, 734, 905
RsaNI	GTAC	6 cut(s)	258, 427, 524, 651, 733, 904
RseI	CAYNNNNRTG	2 cut(s)	645, 1115
SaqAI	TTAA	3 cut(s)	773, 873, 1022
SatI	GCNGC	5 cut(s)	126, 183, 186, 1101, 1310
Sau3AI	GATC	5 cut(s)	199, 449, 739, 895, 1078
ScaI	AGTACT	1 cut(s)	525
SfaNI	GCATC	3 cut(s)	556, 1112, 1282
SfcI	CTRYAG	2 cut(s)	126, 837
SfuI	TTCGAA	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	645, 1115
SmlI	CTYRAG	4 cut(s)	284, 387, 908, 1130
SmoI	CTYRAG	4 cut(s)	284, 387, 908, 1130
SsiI	CCGC	3 cut(s)	595, 657, 1100
SspMI	CTAG	2 cut(s)	1136, 1305
StyI	CCWWGG	2 cut(s)	1082, 1110
TaaI	ACNGT	5 cut(s)	148, 215, 424, 484, 684
TaiI	ACGT	1 cut(s)	734
TaqI	TCGA	2 cut(s)	160, 993
TatI	WGTACW	2 cut(s)	426, 523
TauI	GCSGC	1 cut(s)	1103
TfiI	GAWTC	3 cut(s)	34, 222, 1210
Tru1I	TTAA	3 cut(s)	773, 873, 1022
Tru9I	TTAA	3 cut(s)	773, 873, 1022
TscAI	CASTG	2 cut(s)	135, 429
TseFI	GTSAC	1 cut(s)	1300
TseI	GCWGC	4 cut(s)	125, 182, 185, 1309
Tsp45I	GTSAC	1 cut(s)	1300
TspDTI	ATGAA	6 cut(s)	17, 134, 225, 534, 1029, 1196
TspGWI	ACGGA	3 cut(s)	462, 639, 1105
TspRI	CASTG	2 cut(s)	135, 429
XapI	RAATTY	4 cut(s)	343, 553, 1220, 1346
XmnI	GAANNNNTTC	3 cut(s)	100, 140, 1235
XspI	CTAG	2 cut(s)	1136, 1305
ZrmI	AGTACT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.