MD03G1077700.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
6296618 .. 6299466
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1077700.v1.1.491

Sequence Viewer

Length: 1374 bp
ATGAAGAGAACACCAAGTCCTCATAATCTGCAGGCAAATCAGGGAAAGCAAATCTCCAGTTTCCGGTATGAAGATGGTAACAAGAACAAAGCTAAGCACAAAAGTCTTCCTGTCCTGAGGCATATCAAGGTTGCTGTGAAGAAAGTTGCCGGGCTTTTCACAATTCTTTTCGGACAGCGAAAGGCCGCCTCAAAGGCTGCTGCTTTGATTGAAACAAAAAGAAATGATTCTCGAATCCGAGGGATTTCGTCGTCAACTGATCGTTCGTCAGGGAGTGACACAAGGAGTAAGAGCTCGTCGAAGTTTAAGTTCTCTCAGTCCACTAGTTCTGCCAGTGGATTAATTGAGACGACGAATTTCTCTTACGAAGAGATTCTCAAAGCAACGGAAAAATTCTCTCCAGCAAATCAGATTGGTGAGGGCAGATTTGGAACCGTGTACAAGGGAAGGCTTGCAGATGGATCTCTTGTTGCTGTAAAGCGTGCTCGGAAGGCTGCGTCTGACAAGCTCTTAGAAACGGAGTTCAAGAATGAAATACTTACCTTGTCAACGATCGAGCATCTGAATTTGGTACGGTTATATGGATATCTGGAGCATGGAGATGAGCGGATTATTGTGGTTGAATACGTTGCAAATGGAACGCTTCGCGAGCATTTGGATGGTACAAATGGAAATGAACTTGAAACCGGAGAACGTTTGGACATTGCTATTGATGTGGCTCATGCAATCACCTATCTTCACATGTATAAAGATCCTCCGATAATCCACAGAGACATAAAATCTTTAAACATCCTCATCACAGAAAAACTTCGGGCTAAAGTGGCGGACTTTGGGTTTGCACGATCGTCTGCAGACCCAAATGCAACTCACATTTCAACTCAAGTCAAAGGAACGGCAGGATACTTGGACCCCGAGTACCTCAAGACTTATCAACTCACCGTAAAGAGTGATGTTTACTCCTTTGGTGTCTTGCTTGTAGAACTTATGACAGGAAGACGACCCATCGAACCAAAGAAGACAACCAATGAAAGAATTACAACAAGATGGGCAATCCAAATGTTGAAACGAGGAGACGCGATATTTGTCATGGATCCAAGGCTACGGAGAAACCCGGCATCAACGATGGTTTTGGAGAAAGTCCTTCTGCTAGCTCAGGAATGCCTTGCACCTCTAAGAAATTCAAGACCCTCCATGAAAAAATGTGCTGAAGTGTTATGGGGAATTCGAAAGGACTTTCAAGAAAAATCCCTCCTTTCTTCCTCCTCTGATGTTCATTTTTCTGCGAATTATCCCGTCAGAGATGCAAAGAGGACTCGGCGGACATCGTTTGGGATTCAAGATGATGATTGTCAGAGATTTATTATCTCTGCCTAA

Protein Analysis

458

Amino Acids

51.23

Weight (kDa)

9.78

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 135 - 406 1.1e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 136 - 404 1.3e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 607
AccII CGCG 2 cut(s) 648, 1076
AciI CCGC 4 cut(s) 186, 607, 824, 1318
AclI AACGTT 1 cut(s) 694
AclWI GGATC 4 cut(s) 469, 746, 1085, 1098
AcsI RAATTY 5 cut(s) 355, 392, 565, 1177, 1221
AcuI CTGAAG 1 cut(s) 1227
AfaI GTAC 4 cut(s) 440, 573, 664, 917
AfiI CCNNNNNNNGG 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 9 cut(s) 212, 526, 623, 683, 876, 1063, 1182, 1238, 1337
AhlI ACTAGT 1 cut(s) 323
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 4 cut(s) 92, 294, 508, 1151
AluI AGCT 4 cut(s) 92, 294, 508, 1151
Alw21I GWGCWC 2 cut(s) 296, 487
Alw26I GTCTC 3 cut(s) 341, 765, 1065
AlwI GGATC 4 cut(s) 469, 746, 1085, 1098
Ama87I CYCGRG 1 cut(s) 911
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 197, 200, 494
ApoI RAATTY 5 cut(s) 355, 392, 565, 1177, 1221
ArsI GACNNNNNNTTYG 4 cut(s) 818, 850, 1064, 1096
AseI ATTAAT 1 cut(s) 341
Asp700I GAANNNNTTC 3 cut(s) 226, 372, 807
AspS9I GGNCC 1 cut(s) 907
AsuC2I CCSGG 2 cut(s) 151, 1112
AsuHPI GGTGA 3 cut(s) 428, 721, 928
AsuII TTCGAA 1 cut(s) 1225
AsuNHI GCTAGC 1 cut(s) 1147
AvaI CYCGRG 1 cut(s) 911
AvaII GGWCC 1 cut(s) 907
AxyI CCTNAGG 1 cut(s) 116
BamHI GGATCC 1 cut(s) 1090
BanII GRGCYC 1 cut(s) 296
BbsI GAAGAC 3 cut(s) 98, 1000, 1022
Bbv12I GWGCWC 2 cut(s) 296, 487
BbvI GCAGC 3 cut(s) 184, 187, 481
BccI CCATC 6 cut(s) 68, 452, 653, 1010, 1038, 1117
BceAI ACGGC 1 cut(s) 909
BciVI GTATCC 1 cut(s) 893
BcnI CCSGG 2 cut(s) 151, 1112
BcoDI GTCTC 3 cut(s) 341, 765, 1065
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 2 cut(s) 324, 1148
BfmI CTRYAG 2 cut(s) 29, 849
BfuI GTATCC 1 cut(s) 893
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 4 cut(s) 186, 198, 201, 495
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 4 cut(s) 187, 199, 202, 496
Bme1390I CCNGG 2 cut(s) 151, 1112
Bme18I GGWCC 1 cut(s) 907
BmeT110I CYCGRG 1 cut(s) 911
BmgT120I GGNCC 1 cut(s) 907
BmiI GGNNCC 3 cut(s) 433, 909, 1092
BmrFI CCNGG 2 cut(s) 151, 1112
BmsI GCATC 3 cut(s) 568, 1124, 1291
BmtI GCTAGC 1 cut(s) 1151
BpiI GAAGAC 3 cut(s) 98, 1000, 1022
BpmI CTGGAG 3 cut(s) 40, 384, 611
Bpu10I CCTNAGC 1 cut(s) 1152
Bpu1102I GCTNAGC 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 1225
BpuEI CTTGAG 2 cut(s) 864, 905
BpuMI CCSGG 2 cut(s) 151, 1112
BsaJI CCNNGG 2 cut(s) 238, 1094
BsaWI WCCGGW 2 cut(s) 63, 686
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 57, 333
Bse21I CCTNAGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 238, 1094
BseGI GGATG 2 cut(s) 664, 789
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 3 cut(s) 107, 329, 1166
BseNI ACTGG 2 cut(s) 57, 333
BseRI GAGGAG 2 cut(s) 1083, 1252
BseXI GCAGC 3 cut(s) 184, 187, 481
Bsh1236I CGCG 2 cut(s) 648, 1076
Bsh1285I CGRYCG 2 cut(s) 555, 845
BshFI GGCC 1 cut(s) 185
BsiEI CGRYCG 2 cut(s) 555, 845
BsiHKAI GWGCWC 2 cut(s) 296, 487
BsiHKCI CYCGRG 1 cut(s) 911
BsiSI CCGG 4 cut(s) 64, 150, 687, 1112
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 3 cut(s) 341, 765, 1065
BsmBI CGTCTC 2 cut(s) 341, 1065
BsmI GAATGC 1 cut(s) 1163
BsnI GGCC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 911
Bsp119I TTCGAA 1 cut(s) 1225
Bsp1286I GDGCHC 2 cut(s) 296, 487
Bsp1407I TGTACA 1 cut(s) 438
Bsp143I GATC 6 cut(s) 259, 461, 552, 751, 842, 1090
Bsp1720I GCTNAGC 1 cut(s) 93
Bsp68I TCGCGA 1 cut(s) 648
BspACI CCGC 4 cut(s) 186, 607, 824, 1318
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 3 cut(s) 108, 328, 1165
BspFNI CGCG 2 cut(s) 648, 1076
BspLI GGNNCC 3 cut(s) 433, 909, 1092
BspMAI CTGCAG 2 cut(s) 33, 853
BspOI GCTAGC 1 cut(s) 1151
BspPI GGATC 4 cut(s) 469, 746, 1085, 1098
BspT104I TTCGAA 1 cut(s) 1225
BsrBI CCGCTC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 702
BsrGI TGTACA 1 cut(s) 438
BsrI ACTGG 2 cut(s) 57, 333
BssECI CCNNGG 2 cut(s) 238, 1094
BssMI GATC 6 cut(s) 259, 461, 552, 751, 842, 1090
BssT1I CCWWGG 1 cut(s) 1094
Bst4CI ACNGT 3 cut(s) 436, 576, 940
Bst6I CTCTTC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 438
BstBI TTCGAA 1 cut(s) 1225
BstC8I GCNNGC 5 cut(s) 33, 453, 483, 650, 1149
BstDEI CTNAG 6 cut(s) 93, 116, 315, 511, 1152, 1172
BstF5I GGATG 2 cut(s) 664, 789
BstFNI CGCG 2 cut(s) 648, 1076
BstKTI GATC 6 cut(s) 262, 464, 555, 754, 845, 1093
BstMAI GTCTC 3 cut(s) 341, 765, 1065
BstMBI GATC 6 cut(s) 259, 461, 552, 751, 842, 1090
BstMCI CGRYCG 2 cut(s) 555, 845
BstMWI GCNNNNNNNGC 4 cut(s) 194, 491, 649, 821
BstNSI RCATGY 1 cut(s) 745
BstSCI CCNGG 2 cut(s) 149, 1110
BstSFI CTRYAG 2 cut(s) 29, 849
BstUI CGCG 2 cut(s) 648, 1076
BstV1I GCAGC 3 cut(s) 184, 187, 481
BstV2I GAAGAC 3 cut(s) 98, 1000, 1022
BstX2I RGATCY 3 cut(s) 461, 751, 1090
BstYI RGATCY 3 cut(s) 461, 751, 1090
Bsu36I CCTNAGG 1 cut(s) 116
BsuI GTATCC 1 cut(s) 893
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 664, 789
BtsIMutI CAGTG 1 cut(s) 340
BtuMI TCGCGA 1 cut(s) 648
Cac8I GCNNGC 5 cut(s) 33, 453, 483, 650, 1149
Cfr13I GGNCC 1 cut(s) 907
CseI GACGC 2 cut(s) 486, 1082
Csp6I GTAC 4 cut(s) 439, 572, 663, 916
CviAII CATG 5 cut(s) 596, 722, 742, 1087, 1192
CviQI GTAC 4 cut(s) 439, 572, 663, 916
DdeI CTNAG 6 cut(s) 93, 116, 315, 511, 1152, 1172
DpnI GATC 6 cut(s) 261, 463, 554, 753, 844, 1092
DpnII GATC 6 cut(s) 259, 461, 552, 751, 842, 1090
DraI TTTAAA 1 cut(s) 786
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
EciI GGCGGA 2 cut(s) 839, 1333
Ecl136II GAGCTC 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 1094
Eco24I GRGCYC 1 cut(s) 296
Eco32I GATATC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 907
Eco53kI GAGCTC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 1227
Eco81I CCTNAGG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 911
EcoICRI GAGCTC 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 1221
EcoRV GATATC 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 1094
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 1094
Esp3I CGTCTC 2 cut(s) 341, 1065
FaeI CATG 5 cut(s) 599, 725, 745, 1090, 1195
FatI CATG 5 cut(s) 595, 721, 741, 1086, 1191
Fnu4HI GCNGC 4 cut(s) 186, 198, 201, 495
FokI GGATG 2 cut(s) 671, 776
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 4 cut(s) 186, 198, 201, 495
FspBI CTAG 2 cut(s) 324, 1148
GluI GCNGC 4 cut(s) 186, 198, 201, 495
GsuI CTGGAG 3 cut(s) 40, 384, 611
HaeIII GGCC 1 cut(s) 185
HapII CCGG 4 cut(s) 64, 150, 687, 1112
HgaI GACGC 2 cut(s) 486, 1082
Hin1II CATG 5 cut(s) 599, 725, 745, 1090, 1195
HincII GTYRAC 2 cut(s) 255, 549
HindII GTYRAC 2 cut(s) 255, 549
HinfI GANTC 5 cut(s) 227, 234, 373, 1312, 1333
HpaII CCGG 4 cut(s) 64, 150, 687, 1112
HphI GGTGA 3 cut(s) 428, 721, 928
Hpy166II GTNNAC 5 cut(s) 255, 321, 439, 549, 955
Hpy8I GTNNAC 5 cut(s) 255, 321, 439, 549, 955
Hpy99I CGWCG 3 cut(s) 253, 301, 355
HpyAV CCTTC 3 cut(s) 441, 484, 1151
HpyCH4III ACNGT 3 cut(s) 436, 576, 940
HpyCH4IV ACGT 2 cut(s) 627, 694
HpyCH4V TGCA 9 cut(s) 31, 455, 632, 725, 839, 851, 863, 1166, 1304
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 491, 649, 821
HpyF3I CTNAG 6 cut(s) 93, 116, 315, 511, 1152, 1172
HpySE526I ACGT 2 cut(s) 627, 694
Hsp92II CATG 5 cut(s) 599, 725, 745, 1090, 1195
Kzo9I GATC 6 cut(s) 259, 461, 552, 751, 842, 1090
LmnI GCTCC 1 cut(s) 592
Lsp1109I GCAGC 3 cut(s) 184, 187, 481
LweI GCATC 3 cut(s) 568, 1124, 1291
MaeI CTAG 2 cut(s) 324, 1148
MaeII ACGT 2 cut(s) 627, 694
MaeIII GTNAC 2 cut(s) 77, 275
MalI GATC 6 cut(s) 261, 463, 554, 753, 844, 1092
MbiI CCGCTC 1 cut(s) 607
MboI GATC 6 cut(s) 259, 461, 552, 751, 842, 1090
MboII GAAGA 9 cut(s) 16, 83, 98, 151, 380, 728, 1005, 1027, 1248
MflI RGATCY 3 cut(s) 461, 751, 1090
MhlI GDGCHC 2 cut(s) 296, 487
MluCI AATT 9 cut(s) 162, 342, 355, 392, 565, 1032, 1177, 1221, 1285
MlyI GAGTC 1 cut(s) 1306
MroXI GAANNNNTTC 3 cut(s) 226, 372, 807
MseI TTAA 3 cut(s) 306, 341, 785
MslI CAYNNNNRTG 2 cut(s) 600, 657
MspI CCGG 4 cut(s) 64, 150, 687, 1112
MspR9I CCNGG 2 cut(s) 151, 1112
Mva1269I GAATGC 1 cut(s) 1163
MvnI CGCG 2 cut(s) 648, 1076
MwoI GCNNNNNNNGC 4 cut(s) 194, 491, 649, 821
NciI CCSGG 2 cut(s) 151, 1112
NdeII GATC 6 cut(s) 259, 461, 552, 751, 842, 1090
NheI GCTAGC 1 cut(s) 1147
NlaIII CATG 5 cut(s) 599, 725, 745, 1090, 1195
NlaIV GGNNCC 3 cut(s) 433, 909, 1092
NmeAIII GCCGAG 1 cut(s) 1294
NmuCI GTSAC 1 cut(s) 275
NruI TCGCGA 1 cut(s) 648
NspI RCATGY 1 cut(s) 745
NspV TTCGAA 1 cut(s) 1225
PciI ACATGT 1 cut(s) 741
PctI GAATGC 1 cut(s) 1163
PdmI GAANNNNTTC 3 cut(s) 226, 372, 807
PfeI GAWTC 4 cut(s) 227, 234, 373, 1333
PkrI GCNGC 4 cut(s) 187, 199, 202, 496
Ple19I CGATCG 2 cut(s) 555, 845
PleI GAGTC 1 cut(s) 1306
PpsI GAGTC 1 cut(s) 1306
PscI ACATGT 1 cut(s) 741
PshBI ATTAAT 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 694
PspN4I GGNNCC 3 cut(s) 433, 909, 1092
PspPI GGNCC 1 cut(s) 907
PstI CTGCAG 2 cut(s) 33, 853
PsuI RGATCY 3 cut(s) 461, 751, 1090
PvuI CGATCG 2 cut(s) 555, 845
RruI TCGCGA 1 cut(s) 648
RsaI GTAC 4 cut(s) 440, 573, 664, 917
RsaNI GTAC 4 cut(s) 439, 572, 663, 916
RseI CAYNNNNRTG 2 cut(s) 600, 657
SacI GAGCTC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 306, 341, 785
SatI GCNGC 4 cut(s) 186, 198, 201, 495
Sau3AI GATC 6 cut(s) 259, 461, 552, 751, 842, 1090
Sau96I GGNCC 1 cut(s) 907
SchI GAGTC 1 cut(s) 1306
ScrFI CCNGG 2 cut(s) 151, 1112
SduI GDGCHC 2 cut(s) 296, 487
SfaNI GCATC 3 cut(s) 568, 1124, 1291
SfcI CTRYAG 2 cut(s) 29, 849
SfuI TTCGAA 1 cut(s) 1225
SinI GGWCC 1 cut(s) 907
SmiMI CAYNNNNRTG 2 cut(s) 600, 657
SmlI CTYRAG 2 cut(s) 879, 920
SmoI CTYRAG 2 cut(s) 879, 920
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 9 cut(s) 162, 342, 355, 392, 565, 1032, 1177, 1221, 1285
SsiI CCGC 4 cut(s) 186, 607, 824, 1318
SspMI CTAG 2 cut(s) 324, 1148
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 149, 1110
StyI CCWWGG 1 cut(s) 1094
TaaI ACNGT 3 cut(s) 436, 576, 940
TaiI ACGT 2 cut(s) 630, 697
TaqI TCGA 5 cut(s) 232, 299, 555, 1005, 1225
TasI AATT 9 cut(s) 162, 342, 355, 392, 565, 1032, 1177, 1221, 1285
TatI WGTACW 1 cut(s) 438
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 4 cut(s) 227, 234, 373, 1333
Tru1I TTAA 3 cut(s) 306, 341, 785
Tru9I TTAA 3 cut(s) 306, 341, 785
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 3 cut(s) 197, 200, 494
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 7 cut(s) 17, 84, 546, 690, 1041, 1208, 1262
TspGWI ACGGA 3 cut(s) 401, 533, 1117
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 907
VspI ATTAAT 1 cut(s) 341
XapI RAATTY 5 cut(s) 355, 392, 565, 1177, 1221
XceI RCATGY 1 cut(s) 745
XmnI GAANNNNTTC 3 cut(s) 226, 372, 807
XspI CTAG 2 cut(s) 324, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.