Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005613

Physical Location & Seq

Genomic Coordinates Forward (+)

16203096 .. 16210716

Gene Structure 7621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAAGAAAGCTCAAAGCCCTCATAACCAGAGGAATCAGTTTTCCAATTTTCACTTTGAAGATGACAAGAATAATAAAACCAAGCAACATAGTGGAAGCCGTTCTACCCTGAAACATATGAAGGCTGCAGTGAAGAAAGCTTTCACAGTTCTTTTCTTTCGAAGAAAGGTCAACTCAAAGGCTGCTGTTTCTGTAATTGATCCAATAAGAAACAGTAATAGAATCAGAGGAGTTTCATCTTCAACCGATGGTTCATCAGGGAGTACTGACACTAGGAACTCATCAAAGTTCAAGTTATCTGGGTCTTATGATTCTTCTACTACTCTGAGTGGAGTAAATGAGATGGCAAATTTCTCCTACGAAGAGATTTTTAAGGCAACCGAAAAGTTCTCTCCAGCAAATAAAATAGGTGAGGGTGCTTTTGGGACAGTGTACAGAGGAAGGCTCGGGGATGGATCTCTTGTTGCTGTAAAGCGTGCCAAGAAGACAGTATCTGACAAGCTCTTAGAATTGGAGTTCAAGAATGAAACACTCACCTTGTCCATGATTGAGCATCTGAATTTGGTAAGATTATATGGATATTTGGAGCATGGGGACGAGCGCATTATTTTGGTTGAATATGTTGGCAACGGAACACTACGGGAACATCTGGATGGTACACGCGGAAATGGACTTGAAATTGCAGAACGGTTAGACATCGCAATTGATGTGGCTCATGCAATTACCTATCTTCACACATACACAGATCCTCCAATAATCCACAGAGACATAAAATCATTGAATATCCTCATCACAGAGAAATTACGAGCGAAAGTAGCAGACTTTGGGTTTGCACGATTGTCTGCAGACCCTAATGCAACTCATATTTCAACTCAGATTAAAGGAACGGCAGGCTACTTGGATCCTGAGTACCTCAAGACTTATCAGCTCACCGAAAAGAGTGATGTTTACTCCTTTGGTGTGTTGCTTGTAGAGCTGATGACAGGAAGACGACCCATCGAACCCACCAAACCAAACAATGAAAGATTAACAACAAGATGGGCAATCCAAACATTGAAACGAGGAGAAGCTGTACTTGTCATGGATCCAAGGCTACGGAGAAGTGCGGCATCAACCATGGCAATGGAGAAAATCCTCAAGCTAGCTCACGACTGCCTTGCACCTTTAAGACAATCAAGACCCTCCATGAAAAAATGTGCTGAAGTATTATGGGGGATTCGCAAGGAATTCAGAGAGAAAGCCTTCCCTGCTCCTCCTCCAACTTCTCACTGCTCTGACAATTTTCCTGTGAGAGATGCGAAGATGAGTAGGCAGCAGACTTTTGGAATTGAAGATGGTGATAGCTATAAATTTATCTCAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

454

Amino Acids

50.93

Weight (kDa)

9.61

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	133 - 404	2.3e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	134 - 403	4.4e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58940 AT5G58940 AT5G58940 AT5G58940
fragaria_vesca	FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911 FvH4_3g37911
malus_domestica	MD03G1077700.v1.1 MD11G1082100.v1.1
prunus_persica	Prupe.6G062500_v2.0.a1
pyrus_communis	pycom03g06160 pycom11g07040
rosa_chinensis	RchiOBHm_Chr5g0068331
rosa_laevigata	RLG00000035966
rosa_multiflora	Rmu_sc0001418.1_g000020 Rmu_sc0012198.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013170
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447500 Rh5AG447600 Rh5BG465500 Rh5CG487200 Rh5DG479100
rosa_wichuraiana	Rw5G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	663
AciI	CCGC	2 cut(s)	663, 1106
AclWI	GGATC	7 cut(s)	194, 463, 740, 896, 909, 1079, 1092
AcsI	RAATTY	4 cut(s)	349, 559, 1226, 1349
AcuI	CTGAAG	1 cut(s)	1221
AfaI	GTAC	5 cut(s)	265, 434, 658, 911, 1074
AluBI	AGCT	9 cut(s)	11, 140, 502, 928, 976, 1070, 1141, 1145, 1344
AluI	AGCT	9 cut(s)	11, 140, 502, 928, 976, 1070, 1141, 1145, 1344
Alw26I	GTCTC	1 cut(s)	759
AlwI	GGATC	7 cut(s)	194, 463, 740, 896, 909, 1079, 1092
AlwNI	CAGNNNCTG	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	125, 182, 1312
ApoI	RAATTY	4 cut(s)	349, 559, 1226, 1349
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
Asp700I	GAANNNNTTC	3 cut(s)	100, 140, 1241
AspLEI	GCGC	1 cut(s)	603
AsuHPI	GGTGA	4 cut(s)	422, 526, 922, 1349
AsuII	TTCGAA	1 cut(s)	160
AsuNHI	GCTAGC	1 cut(s)	1141
AvaI	CYCGRG	1 cut(s)	446
BamHI	GGATCC	2 cut(s)	901, 1084
BarI	GAAGNNNNNNTAC	2 cut(s)	88, 120
BbsI	GAAGAC	2 cut(s)	491, 994
BbvI	GCAGC	3 cut(s)	112, 169, 1324
BccI	CCATC	7 cut(s)	242, 337, 446, 647, 1004, 1032, 1328
BceAI	ACGGC	2 cut(s)	84, 903
BcgI	CGANNNNNNTGC	2 cut(s)	1139, 1173
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	2 cut(s)	273, 1142
BfmI	CTRYAG	2 cut(s)	126, 843
BisI	GCNGC	4 cut(s)	126, 183, 1107, 1313
BlsI	GCNGC	4 cut(s)	127, 184, 1108, 1314
BmcAI	AGTACT	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	903, 1086
BmsI	GCATC	3 cut(s)	562, 1118, 1285
BmtI	GCTAGC	1 cut(s)	1145
BpiI	GAAGAC	2 cut(s)	491, 994
BplI	GAGNNNNNCTC	2 cut(s)	429, 461
BpmI	CTGGAG	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	160
BpuEI	CTTGAG	2 cut(s)	899, 1121
BsaJI	CCNNGG	2 cut(s)	1088, 1116
BsaXI	ACNNNNNCTCC	4 cut(s)	733, 763, 1056, 1086
Bse3DI	GCAATG	1 cut(s)	1128
BseDI	CCNNGG	2 cut(s)	1088, 1116
BseGI	GGATG	2 cut(s)	457, 658
BseMI	GCAATG	1 cut(s)	1128
BseMII	CTCAG	3 cut(s)	317, 887, 897
BseRI	GAGGAG	4 cut(s)	243, 1077, 1242, 1245
BseXI	GCAGC	3 cut(s)	112, 169, 1324
Bsh1236I	CGCG	1 cut(s)	663
BsiHKCI	CYCGRG	1 cut(s)	446
BslFI	GGGAC	2 cut(s)	439, 608
BsmAI	GTCTC	1 cut(s)	759
BsmFI	GGGAC	2 cut(s)	439, 608
BsoBI	CYCGRG	1 cut(s)	446
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	5 cut(s)	199, 455, 745, 901, 1084
Bsp19I	CCATGG	1 cut(s)	1116
BspACI	CCGC	2 cut(s)	663, 1106
BspCNI	CTCAG	3 cut(s)	318, 886, 898
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	2 cut(s)	903, 1086
BspMAI	CTGCAG	2 cut(s)	130, 847
BspOI	GCTAGC	1 cut(s)	1145
BspPI	GGATC	7 cut(s)	194, 463, 740, 896, 909, 1079, 1092
BspT104I	TTCGAA	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	1128
BsrGI	TGTACA	1 cut(s)	432
BssECI	CCNNGG	2 cut(s)	1088, 1116
BssMI	GATC	5 cut(s)	199, 455, 745, 901, 1084
BssT1I	CCWWGG	2 cut(s)	1088, 1116
Bst4CI	ACNGT	5 cut(s)	148, 215, 430, 490, 690
Bst6I	CTCTTC	1 cut(s)	357
BstAUI	TGTACA	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	477, 892, 1143
BstDEI	CTNAG	5 cut(s)	326, 505, 873, 906, 1357
BstDSI	CCRYGG	1 cut(s)	1116
BstF5I	GGATG	2 cut(s)	457, 658
BstFNI	CGCG	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	5 cut(s)	202, 458, 748, 904, 1087
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	5 cut(s)	199, 455, 745, 901, 1084
BstMWI	GCNNNNNNNGC	3 cut(s)	815, 973, 1247
BstSFI	CTRYAG	2 cut(s)	126, 843
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	3 cut(s)	112, 169, 1324
BstV2I	GAAGAC	2 cut(s)	491, 994
BstX2I	RGATCY	4 cut(s)	455, 745, 901, 1084
BstXI	CCANNNNNNTGG	1 cut(s)	1123
BstYI	RGATCY	4 cut(s)	455, 745, 901, 1084
BtgI	CCRYGG	1 cut(s)	1116
BtgZI	GCGATG	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	457, 658
BtsI	GCAGTG	2 cut(s)	135, 1267
BtsIMutI	CAGTG	3 cut(s)	135, 435, 1267
Cac8I	GCNNGC	3 cut(s)	477, 892, 1143
CaiI	CAGNNNCTG	1 cut(s)	494
CfoI	GCGC	1 cut(s)	603
Csp6I	GTAC	5 cut(s)	264, 433, 657, 910, 1073
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	6 cut(s)	544, 590, 716, 1081, 1117, 1186
CviQI	GTAC	5 cut(s)	264, 433, 657, 910, 1073
DdeI	CTNAG	5 cut(s)	326, 505, 873, 906, 1357
DpnI	GATC	5 cut(s)	201, 457, 747, 903, 1086
DpnII	GATC	5 cut(s)	199, 455, 745, 901, 1084
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	1088, 1116
Eco57I	CTGAAG	1 cut(s)	1221
Eco88I	CYCGRG	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	1226
EcoT14I	CCWWGG	2 cut(s)	1088, 1116
ErhI	CCWWGG	2 cut(s)	1088, 1116
FaeI	CATG	6 cut(s)	547, 593, 719, 1084, 1120, 1189
FalI	AAGNNNNNCTT	2 cut(s)	1059, 1091
FaqI	GGGAC	2 cut(s)	439, 608
FatI	CATG	6 cut(s)	543, 589, 715, 1080, 1116, 1185
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	126, 183, 1107, 1313
FokI	GGATG	2 cut(s)	464, 665
Fsp4HI	GCNGC	4 cut(s)	126, 183, 1107, 1313
FspBI	CTAG	2 cut(s)	273, 1142
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	4 cut(s)	126, 183, 1107, 1313
GsuI	CTGGAG	1 cut(s)	378
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	6 cut(s)	547, 593, 719, 1084, 1120, 1189
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	4 cut(s)	34, 222, 311, 1216
HphI	GGTGA	4 cut(s)	422, 526, 922, 1349
Hpy166II	GTNNAC	4 cut(s)	172, 433, 659, 949
Hpy188I	TCNGA	7 cut(s)	227, 327, 496, 558, 876, 1232, 1276
Hpy188III	TCNNGA	6 cut(s)	520, 650, 905, 916, 1148, 1176
Hpy8I	GTNNAC	4 cut(s)	172, 433, 659, 949
HpyAV	CCTTC	3 cut(s)	115, 435, 1252
HpyCH4III	ACNGT	5 cut(s)	148, 215, 430, 490, 690
HpyCH4V	TGCA	7 cut(s)	128, 683, 719, 833, 845, 857, 1160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	815, 973, 1247
HpyF3I	CTNAG	5 cut(s)	326, 505, 873, 906, 1357
Hsp92II	CATG	6 cut(s)	547, 593, 719, 1084, 1120, 1189
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	5 cut(s)	199, 455, 745, 901, 1084
LmnI	GCTCC	2 cut(s)	586, 1255
Lsp1109I	GCAGC	3 cut(s)	112, 169, 1324
LweI	GCATC	3 cut(s)	562, 1118, 1285
MaeI	CTAG	2 cut(s)	273, 1142
MalI	GATC	5 cut(s)	201, 457, 747, 903, 1086
MboI	GATC	5 cut(s)	199, 455, 745, 901, 1084
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	4 cut(s)	455, 745, 901, 1084
MmeI	TCCRAC	1 cut(s)	1283
MroXI	GAANNNNTTC	3 cut(s)	100, 140, 1241
MseI	TTAA	4 cut(s)	372, 879, 1028, 1166
MslI	CAYNNNNRTG	2 cut(s)	651, 1121
MunI	CAATTG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	3 cut(s)	815, 973, 1247
NcoI	CCATGG	1 cut(s)	1116
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	5 cut(s)	199, 455, 745, 901, 1084
NheI	GCTAGC	1 cut(s)	1141
NlaIII	CATG	6 cut(s)	547, 593, 719, 1084, 1120, 1189
NlaIV	GGNNCC	2 cut(s)	903, 1086
NspV	TTCGAA	1 cut(s)	160
PdmI	GAANNNNTTC	3 cut(s)	100, 140, 1241
PfeI	GAWTC	4 cut(s)	34, 222, 311, 1216
PkrI	GCNGC	4 cut(s)	127, 184, 1108, 1314
PspN4I	GGNNCC	2 cut(s)	903, 1086
PstI	CTGCAG	2 cut(s)	130, 847
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	4 cut(s)	455, 745, 901, 1084
RsaI	GTAC	5 cut(s)	265, 434, 658, 911, 1074
RsaNI	GTAC	5 cut(s)	264, 433, 657, 910, 1073
RseI	CAYNNNNRTG	2 cut(s)	651, 1121
SaqAI	TTAA	4 cut(s)	372, 879, 1028, 1166
SatI	GCNGC	4 cut(s)	126, 183, 1107, 1313
Sau3AI	GATC	5 cut(s)	199, 455, 745, 901, 1084
ScaI	AGTACT	1 cut(s)	265
SfaNI	GCATC	3 cut(s)	562, 1118, 1285
SfcI	CTRYAG	2 cut(s)	126, 843
SfuI	TTCGAA	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	651, 1121
SmlI	CTYRAG	2 cut(s)	914, 1136
SmoI	CTYRAG	2 cut(s)	914, 1136
SsiI	CCGC	2 cut(s)	663, 1106
SspMI	CTAG	2 cut(s)	273, 1142
StyI	CCWWGG	2 cut(s)	1088, 1116
TaaI	ACNGT	5 cut(s)	148, 215, 430, 490, 690
TaqI	TCGA	2 cut(s)	160, 999
TatI	WGTACW	3 cut(s)	263, 432, 1072
TauI	GCSGC	1 cut(s)	1109
TfiI	GAWTC	4 cut(s)	34, 222, 311, 1216
Tru1I	TTAA	4 cut(s)	372, 879, 1028, 1166
Tru9I	TTAA	4 cut(s)	372, 879, 1028, 1166
TscAI	CASTG	3 cut(s)	135, 435, 1274
TseI	GCWGC	3 cut(s)	125, 182, 1312
TspDTI	ATGAA	7 cut(s)	17, 134, 225, 243, 540, 1035, 1202
TspGWI	ACGGA	2 cut(s)	645, 1111
TspRI	CASTG	3 cut(s)	135, 435, 1274
XapI	RAATTY	4 cut(s)	349, 559, 1226, 1349
XmnI	GAANNNNTTC	3 cut(s)	100, 140, 1241
XspI	CTAG	2 cut(s)	273, 1142
ZrmI	AGTACT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.