AT5G59460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011456
Physical Location & Seq
Reverse (-)
23976723 .. 23978399
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59460.2

Sequence Viewer

Length: 519 bp
ATGGCGAAGAGAGAGATTAGTAGCACTCTGAGAAATCTAAAGTTTATGCAAAGGTCTTCTCTGAAAGTAGAGAAGAAGAAGGCTGATGAAGAAGAGCCTAATGGGAGTTTTCCTTCCCTTAGGACTGTTGCAAAGAAGTGTGTGGTCATAACAGATTGGGATCCTCAGCCAGGAGCATTGTTAGGACGCATGTCTTTTCAGTCTTTCAATCCCTCTATCGAGAAATTACATGAAGAGGCAATAAACGGTGGAAATCCCTCAAGCTCTAGCAGTAATGGAGGAAAAAAGTCTTTTAGTGAACCGGAGAGTTCAAAGGTTGAGCCAAGTGGGGAAACAGATGGTGACTTGAAAAGAAAACAGTCTGAGGTAGTCTCCGAGGAACAAAACCGTCCTAACAAGTCCCCAAGGAGCTTTGACAAACCATCACCGAGCAATAAAAAGGGCAATGGTTTTAAGAAACCCAAGAGCAAGAAGGTGGACTGGAGCGTTTTGAGGCCACCAAAACCTCAAACCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

9.83

Isoelectric Point (pI)

70.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 82 6.3e-09 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 155, 168
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 3 cut(s) 208, 312, 349
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 2 cut(s) 264, 411
AluI AGCT 2 cut(s) 264, 411
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 2 cut(s) 155, 168
AoxI GGCC 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 353, 417
AxyI CCTNAGG 1 cut(s) 119
BamHI GGATCC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 165
BccI CCATC 2 cut(s) 332, 430
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 171
BoxI GACNNNNGTC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 375, 404
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 485
Bse21I CCTNAGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 451
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 375, 404
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 3 cut(s) 20, 179, 354
BseNI ACTGG 1 cut(s) 485
BshFI GGCC 1 cut(s) 496
BsiSI CCGG 1 cut(s) 302
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 1 cut(s) 496
Bsp143I GATC 1 cut(s) 160
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 3 cut(s) 21, 178, 355
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 2 cut(s) 155, 168
BspQI GCTCTTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 2 cut(s) 375, 404
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 4 cut(s) 127, 248, 360, 389
Bst6I CTCTTC 3 cut(s) 2, 87, 228
BstDEI CTNAG 4 cut(s) 29, 119, 165, 363
BstENI CCTNNNNNAGG 1 cut(s) 168
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 193
BstPAI GACNNNNGTC 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 119
BsuRI GGCC 1 cut(s) 496
CseI GACGC 1 cut(s) 195
CviAII CATG 2 cut(s) 190, 230
CviJI RGCY 7 cut(s) 83, 97, 169, 264, 322, 411, 496
CviKI_1 RGCY 7 cut(s) 83, 97, 169, 264, 322, 411, 496
DdeI CTNAG 4 cut(s) 29, 119, 165, 363
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 3 cut(s) 2, 87, 228
EarI CTCTTC 3 cut(s) 2, 87, 228
Eco130I CCWWGG 1 cut(s) 404
Eco81I CCTNAGG 1 cut(s) 119
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 193, 233
FaiI YATR 4 cut(s) 47, 149, 191, 231
FaqI GGGAC 1 cut(s) 385
FatI CATG 2 cut(s) 189, 229
FspBI CTAG 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 502
HaeIII GGCC 1 cut(s) 496
HapII CCGG 1 cut(s) 302
HgaI GACGC 1 cut(s) 195
Hin1II CATG 2 cut(s) 193, 233
HpaII CCGG 1 cut(s) 302
HphI GGTGA 2 cut(s) 353, 417
Hpy166II GTNNAC 2 cut(s) 299, 478
Hpy188I TCNGA 4 cut(s) 30, 63, 364, 376
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 299, 478
HpyAV CCTTC 3 cut(s) 73, 123, 466
HpyCH4III ACNGT 4 cut(s) 127, 248, 360, 389
HpyCH4V TGCA 2 cut(s) 49, 131
HpyF3I CTNAG 4 cut(s) 29, 119, 165, 363
Hsp92II CATG 2 cut(s) 193, 233
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 173, 408, 483
LpnPI CCDG 4 cut(s) 156, 183, 315, 466
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 341
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 7 cut(s) 19, 48, 85, 88, 101, 104, 245
MflI RGATCY 1 cut(s) 160
MluCI AATT 1 cut(s) 224
MnlI CCTC 9 cut(s) 174, 223, 229, 268, 272, 358, 370, 486, 516
MseI TTAA 1 cut(s) 453
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 193, 233
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 87
PshAI GACNNNNGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 162
PsuI RGATCY 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 453
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 171
SetI ASST 7 cut(s) 56, 266, 318, 369, 413, 477, 508
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 1 cut(s) 224
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 4 cut(s) 127, 248, 360, 389
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 224
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 102, 246
XagI CCTNNNNNAGG 1 cut(s) 168
XceI RCATGY 1 cut(s) 193
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.