RLG00000035817

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011456
Physical Location & Seq
Forward (+)
72126500 .. 72129325
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035817

Sequence Viewer

Length: 771 bp
ATGGCGAAGCGGGAGCTTTCCAGCACTCTGAGGAACTTAAAGTTCATGCAAAGGGCAACTCAGAGAGAGGAGATGGTGAAGAAAGAAGAAGAAGAAGAAGTTAAACCTGATGGGGGTTTTAGCTCTGCTGCTACCCAACTAAGGAAGTGTGTGGTCGTAATGGAAGGTGACCCCAGTCCGGGAGCAATTAAAGGGCGAATTTCATTTAACGGTTTCAATCCATTAATTGATAAACTGAATAACCCTGGTCAGCCAGCAGCCTCTGCGTCTTCTTCTGGCATCCAAAGTGAAAGAGTGTCTACTAGAGAAAGTGGGTCCTCAATGGACAAAGCAGAGTGCTCAAATATTGACAACTCAAACTGTGAGCCTAACGGAGACCATAAAAGAAAACAGTCTGAAGTATTGTCTGAAACACAATATCCGAATAAATCGCCCAAAAATGGTCAAGGTCAGTCATCATCAAATAAAAGTAAAGGCTCCTTCAAGAAACCAAAGGGTGGAAAGCTGGATTACAACATTCTTAGGCCATCACAGAGTCAAACCAAAAAAGCAACCCTGCAAAATTCAAAAGCTTCCGGTGGTACTGGGGATCATGGTATAGTATGTGGGCTAGGTAGGAAACCACCTCGGTATTCATGGTGGAGTTTGGCATTTGAGAGATTTACAGATCAGATGGATGACATCCTTAAGATGTGTTATCTAGGTCATATGGCTTTACTGACCATGCTTTTACTTGTGTACTTGAGCAAGAAGGTGACTTGCTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

257

Amino Acids

28.2

Weight (kDa)

9.43

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 112 8.5e-11 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 497
AccI GTMKAC 1 cut(s) 299
AciI CCGC 1 cut(s) 10
AclWI GGATC 1 cut(s) 597
AcsI RAATTY 2 cut(s) 198, 562
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 2 cut(s) 583, 740
AfiI CCNNNNNNNGG 6 cut(s) 113, 141, 178, 179, 440, 497
AflII CTTAAG 1 cut(s) 686
AgsI TTSAA 3 cut(s) 217, 484, 567
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 4 cut(s) 16, 123, 505, 572
AluI AGCT 4 cut(s) 16, 123, 505, 572
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 1 cut(s) 597
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 128, 257
ApoI RAATTY 2 cut(s) 198, 562
AseI ATTAAT 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 88, 179, 766
AvaII GGWCC 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 115, 269
BccI CCATC 4 cut(s) 67, 104, 535, 667
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 3 cut(s) 303, 611, 701
BfrI CTTAAG 1 cut(s) 686
BisI GCNGC 2 cut(s) 129, 258
BlsI GCNGC 2 cut(s) 130, 259
Bme1390I CCNGG 2 cut(s) 180, 246
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 316, 478
BmrFI CCNGG 2 cut(s) 180, 246
BmrI ACTGGG 2 cut(s) 168, 594
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 2 cut(s) 168, 594
BoxI GACNNNNGTC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 763
BpuMI CCSGG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 244, 626
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 6 cut(s) 113, 141, 178, 179, 440, 497
Bse1I ACTGG 2 cut(s) 174, 589
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 244, 626
BseGI GGATG 3 cut(s) 279, 681, 682
BseLI CCNNNNNNNGG 6 cut(s) 113, 141, 178, 179, 440, 497
BseMII CTCAG 2 cut(s) 20, 74
BseNI ACTGG 2 cut(s) 174, 589
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 115, 269
BshFI GGCC 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 2 cut(s) 179, 576
BslI CCNNNNNNNGG 6 cut(s) 113, 141, 178, 179, 440, 497
BsmAI GTCTC 1 cut(s) 369
BsnI GGCC 1 cut(s) 526
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 2 cut(s) 589, 667
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 526
BspCNI CTCAG 2 cut(s) 21, 73
BspLI GGNNCC 2 cut(s) 316, 478
BspPI GGATC 1 cut(s) 597
BspTI CTTAAG 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 174, 589
BssECI CCNNGG 2 cut(s) 244, 626
BssMI GATC 2 cut(s) 589, 667
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 212, 362, 393
BstAFI CTTAAG 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 4 cut(s) 29, 60, 140, 521
BstEII GGTNACC 1 cut(s) 167
BstF5I GGATG 3 cut(s) 279, 681, 682
BstKTI GATC 2 cut(s) 592, 670
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 2 cut(s) 589, 667
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 246
BstPAI GACNNNNGTC 1 cut(s) 174
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 178, 244
BstV1I GCAGC 2 cut(s) 115, 269
BstV2I GAAGAC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 526
BtsCI GGATG 3 cut(s) 279, 681, 682
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 1 cut(s) 255
Csp6I GTAC 2 cut(s) 582, 739
CviAII CATG 4 cut(s) 46, 593, 636, 724
CviQI GTAC 2 cut(s) 582, 739
DdeI CTNAG 4 cut(s) 29, 60, 140, 521
DpnI GATC 2 cut(s) 591, 669
DpnII GATC 2 cut(s) 589, 667
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 49, 596, 639, 727
FaiI YATR 9 cut(s) 47, 381, 594, 599, 604, 637, 708, 710, 725
FatI CATG 4 cut(s) 45, 592, 635, 723
FauI CCCGC 1 cut(s) 3
FauNDI CATATG 1 cut(s) 708
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 2 cut(s) 129, 258
FokI GGATG 3 cut(s) 266, 668, 689
Fsp4HI GCNGC 2 cut(s) 129, 258
FspBI CTAG 3 cut(s) 303, 611, 701
GluI GCNGC 2 cut(s) 129, 258
HaeIII GGCC 1 cut(s) 526
HapII CCGG 2 cut(s) 179, 576
HgaI GACGC 1 cut(s) 255
Hin1II CATG 4 cut(s) 49, 596, 639, 727
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 1 cut(s) 535
HpaII CCGG 2 cut(s) 179, 576
HphI GGTGA 3 cut(s) 88, 179, 766
Hpy166II GTNNAC 2 cut(s) 300, 739
Hpy188I TCNGA 6 cut(s) 30, 63, 397, 409, 423, 672
Hpy188III TCNNGA 1 cut(s) 484
Hpy8I GTNNAC 2 cut(s) 300, 739
HpyAV CCTTC 3 cut(s) 158, 490, 745
HpyCH4III ACNGT 3 cut(s) 212, 362, 393
HpyCH4V TGCA 2 cut(s) 49, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 4 cut(s) 29, 60, 140, 521
Hsp92II CATG 4 cut(s) 49, 596, 639, 727
Kzo9I GATC 2 cut(s) 589, 667
LmnI GCTCC 3 cut(s) 13, 182, 482
Lsp1109I GCAGC 2 cut(s) 115, 269
LweI GCATC 1 cut(s) 288
MaeI CTAG 3 cut(s) 303, 611, 701
MaeIII GTNAC 2 cut(s) 167, 754
MalI GATC 2 cut(s) 591, 669
MboI GATC 2 cut(s) 589, 667
MboII GAAGA 7 cut(s) 91, 98, 101, 104, 107, 261, 264
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 4 cut(s) 186, 198, 225, 562
MlyI GAGTC 1 cut(s) 544
MnlI CCTC 5 cut(s) 24, 61, 271, 328, 636
MseI TTAA 6 cut(s) 38, 102, 189, 207, 224, 687
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 2 cut(s) 179, 576
MspR9I CCNGG 2 cut(s) 180, 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 180
NdeI CATATG 1 cut(s) 708
NdeII GATC 2 cut(s) 589, 667
NlaIII CATG 4 cut(s) 49, 596, 639, 727
NlaIV GGNNCC 2 cut(s) 316, 478
NmuCI GTSAC 2 cut(s) 167, 754
PflMI CCANNNNNTGG 1 cut(s) 497
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 2 cut(s) 130, 259
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
PpuMI RGGWCCY 1 cut(s) 315
PshAI GACNNNNGTC 1 cut(s) 174
PshBI ATTAAT 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 316, 478
PspPI GGNCC 1 cut(s) 315
PspPPI RGGWCCY 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 583, 740
RsaNI GTAC 2 cut(s) 582, 739
SaqAI TTAA 6 cut(s) 38, 102, 189, 207, 224, 687
SatI GCNGC 2 cut(s) 129, 258
Sau3AI GATC 2 cut(s) 589, 667
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 2 cut(s) 180, 246
SduI GDGCHC 1 cut(s) 341
SfaNI GCATC 1 cut(s) 288
SinI GGWCC 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 686, 742
SmoI CTYRAG 2 cut(s) 686, 742
Sse9I AATT 4 cut(s) 186, 198, 225, 562
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 346
SspMI CTAG 3 cut(s) 303, 611, 701
StyD4I CCNGG 2 cut(s) 178, 244
TaaI ACNGT 3 cut(s) 212, 362, 393
TasI AATT 4 cut(s) 186, 198, 225, 562
TatI WGTACW 1 cut(s) 738
Tru1I TTAA 6 cut(s) 38, 102, 189, 207, 224, 687
Tru9I TTAA 6 cut(s) 38, 102, 189, 207, 224, 687
TseFI GTSAC 2 cut(s) 167, 754
TseI GCWGC 2 cut(s) 128, 257
Tsp45I GTSAC 2 cut(s) 167, 754
TspDTI ATGAA 3 cut(s) 34, 192, 624
TspGWI ACGGA 1 cut(s) 387
Van91I CCANNNNNTGG 1 cut(s) 497
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 315
VspI ATTAAT 1 cut(s) 224
XapI RAATTY 2 cut(s) 198, 562
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 3 cut(s) 303, 611, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.