Rh5AG432100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011456
Physical Location & Seq
Forward (+)
74261498 .. 74262978
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG432100.1

Sequence Viewer

Length: 693 bp
ATGGCGAAGCGGGAGCTTTCCAGCACTCTGAGGAACTTAAAGTTCATGCAAAGGGCAACTCAGAGAGAGGAGATGGTGAAGAAAGAAGAAGAAGAAGAAGTCAAACCTGATGGGGGTTTTAGCTCTGCTGCTACCCAACTAAGAAAGTGTGTGGTTGTAATGGAAGGTGACCCCAGTCCGGGAGCAATTAAAGGGCGAATTTCATTTAACGGTTTCAATCCATTAATTGATAAACTGAATAACCCTGGTCAGCCAGCAGCCTCTGCGTCTTCTTCTGGCATCCAAAGTGAAAGAGTGTCAACTAGGAATCTCTTGTCTCTATTTCTGGGATTTTTTGTTCATTGGGTTAAGGAGACTAAAAAACCTGAGCGGCAAATTTGTTCCAAACTTTGGCTTCTGCTTTCCTATATTCTTTCTTCTATTTGCATTTTTCACAGGGAAAGTGGGTCCTCAATGGACGAAGCAGAGTGCTCAAATATTGACAACTCAAACTGTGAGCCTAATGGAGACCATAAAAGAAAACAGTCTGAAGTATTGTCTGAAACACAATATCCGAATAAGTCGCCCAAAAATGATCAAGGTGAGTCATCATCAAATAAAAGTAAAGGCTCCTTCAAGAAACCAAAGGGTGGAAAGCTGGACTACAACATTCTTAGGCCATCAAAGAGTCAAACCAAAAAAGGTAGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

230

Amino Acids

25.64

Weight (kDa)

9.46

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 90 6.9e-10 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 390, 629
AccBSI CCGCTC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 685
AciI CCGC 2 cut(s) 10, 370
AcsI RAATTY 2 cut(s) 198, 375
AcuI CTGAAG 1 cut(s) 549
AfiI CCNNNNNNNGG 5 cut(s) 113, 178, 179, 390, 629
AgsI TTSAA 2 cut(s) 217, 616
AjnI CCWGG 1 cut(s) 244
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 3 cut(s) 16, 123, 637
AluI AGCT 3 cut(s) 16, 123, 637
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 3 cut(s) 321, 347, 501
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 2 cut(s) 128, 257
ApoI RAATTY 2 cut(s) 198, 375
AseI ATTAAT 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 447
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 88, 179, 593
AvaII GGWCC 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 115, 269
BccI CCATC 3 cut(s) 67, 104, 667
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 574
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 3 cut(s) 321, 347, 501
BfaI CTAG 1 cut(s) 303
BisI GCNGC 3 cut(s) 129, 258, 371
BlsI GCNGC 3 cut(s) 130, 259, 372
Bme1390I CCNGG 2 cut(s) 180, 246
Bme18I GGWCC 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 447
BmiI GGNNCC 2 cut(s) 448, 610
BmrFI CCNGG 2 cut(s) 180, 246
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 168
BoxI GACNNNNGTC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 178, 179, 390, 629
Bse1I ACTGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 5 cut(s) 113, 178, 179, 390, 629
BseMII CTCAG 3 cut(s) 20, 74, 357
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 115, 269
BshFI GGCC 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 5 cut(s) 113, 178, 179, 390, 629
BsmAI GTCTC 3 cut(s) 321, 347, 501
BsnI GGCC 1 cut(s) 658
Bso31I GGTCTC 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 1 cut(s) 574
BspACI CCGC 2 cut(s) 10, 370
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 3 cut(s) 21, 73, 358
BspLI GGNNCC 2 cut(s) 448, 610
BspTNI GGTCTC 1 cut(s) 501
BsrBI CCGCTC 1 cut(s) 370
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 212, 494, 525
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 5 cut(s) 29, 60, 140, 366, 653
BstEII GGTNACC 1 cut(s) 167
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 1 cut(s) 577
BstMAI GTCTC 3 cut(s) 321, 347, 501
BstMBI GATC 1 cut(s) 574
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 246
BstPAI GACNNNNGTC 1 cut(s) 174
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 178, 244
BstV1I GCAGC 2 cut(s) 115, 269
BstV2I GAAGAC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 658
BtsCI GGATG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 447
CseI GACGC 1 cut(s) 255
CviAII CATG 1 cut(s) 46
CviJI RGCY 9 cut(s) 16, 123, 253, 260, 394, 499, 609, 637, 658
CviKI_1 RGCY 9 cut(s) 16, 123, 253, 260, 394, 499, 609, 637, 658
DdeI CTNAG 5 cut(s) 29, 60, 140, 366, 653
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
Eco31I GGTCTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 549
Eco91I GGTNACC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 447
EcoO65I GGTNACC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 47, 408, 513, 691
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 574
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 129, 258, 371
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 3 cut(s) 129, 258, 371
FspBI CTAG 1 cut(s) 303
GluI GCNGC 3 cut(s) 129, 258, 371
HaeIII GGCC 1 cut(s) 658
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 255
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 3 cut(s) 307, 584, 667
HpaII CCGG 1 cut(s) 179
HphI GGTGA 3 cut(s) 88, 179, 593
Hpy166II GTNNAC 2 cut(s) 300, 686
Hpy188I TCNGA 5 cut(s) 30, 63, 529, 541, 555
Hpy188III TCNNGA 1 cut(s) 616
Hpy8I GTNNAC 2 cut(s) 300, 686
HpyAV CCTTC 2 cut(s) 158, 622
HpyCH4III ACNGT 3 cut(s) 212, 494, 525
HpyCH4V TGCA 2 cut(s) 49, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 5 cut(s) 29, 60, 140, 366, 653
Hsp92II CATG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 1 cut(s) 574
LmnI GCTCC 3 cut(s) 13, 182, 614
Lsp1109I GCAGC 2 cut(s) 115, 269
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 167
MalI GATC 1 cut(s) 576
MbiI CCGCTC 1 cut(s) 370
MboI GATC 1 cut(s) 574
MboII GAAGA 8 cut(s) 91, 98, 101, 104, 107, 261, 264, 408
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 4 cut(s) 186, 198, 225, 375
MlyI GAGTC 2 cut(s) 593, 676
MnlI CCTC 4 cut(s) 24, 61, 271, 460
MseI TTAA 5 cut(s) 38, 189, 207, 224, 348
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 180, 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 574
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 448, 610
NmuCI GTSAC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 307
PflMI CCANNNNNTGG 2 cut(s) 390, 629
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 3 cut(s) 130, 259, 372
PleI GAGTC 2 cut(s) 592, 675
PpsI GAGTC 2 cut(s) 592, 675
PpuMI RGGWCCY 1 cut(s) 447
PshAI GACNNNNGTC 1 cut(s) 174
PshBI ATTAAT 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 448, 610
PspPI GGNCC 1 cut(s) 447
PspPPI RGGWCCY 1 cut(s) 447
PstNI CAGNNNCTG 1 cut(s) 263
SaqAI TTAA 5 cut(s) 38, 189, 207, 224, 348
SatI GCNGC 3 cut(s) 129, 258, 371
Sau3AI GATC 1 cut(s) 574
Sau96I GGNCC 1 cut(s) 447
SchI GAGTC 2 cut(s) 593, 676
ScrFI CCNGG 2 cut(s) 180, 246
SduI GDGCHC 1 cut(s) 473
SetI ASST 8 cut(s) 18, 109, 125, 169, 367, 583, 639, 685
SfaNI GCATC 1 cut(s) 288
SinI GGWCC 1 cut(s) 447
Sse9I AATT 4 cut(s) 186, 198, 225, 375
SsiI CCGC 2 cut(s) 10, 370
SspI AATATT 1 cut(s) 478
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 178, 244
TaaI ACNGT 3 cut(s) 212, 494, 525
TasI AATT 4 cut(s) 186, 198, 225, 375
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 5 cut(s) 38, 189, 207, 224, 348
Tru9I TTAA 5 cut(s) 38, 189, 207, 224, 348
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 2 cut(s) 128, 257
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 34, 192, 329
Van91I CCANNNNNTGG 2 cut(s) 390, 629
VpaK11BI GGWCC 1 cut(s) 447
VspI ATTAAT 1 cut(s) 224
XapI RAATTY 2 cut(s) 198, 375
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.