RchiOBHm_Chr5g0065711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011456
Physical Location & Seq
Forward (+)
71686356 .. 71689285
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34157

Sequence Viewer

Length: 558 bp
ATGGCGAAGCGGGAGCTTTCCAGCACTCTGAGGAACTTAAAGTTCATGCAAAGGGCAACTCAGAGAGATGAGATGGTGAAGAAAGAGGAAGAAGAAGTCAAACCTGATGGGGGTTTTAGCTCTGCTGCTACCCAACTAAGAAAGTGTGTGGTTGTAATGGAAGGTGACCCCAGTCCGGGAGCAATTAAAGGGCGTATTTCATTTAACGGTTTCAATCCATTAATTGATAAACTGAATAACCCTGGTCAGCCAGCAGCCTCTGCGTCTTCTTCTGGCATCCATAGTGAAAGAGTGTCAACTAGAGAAAGTGGGTCCTCAATGGACGAAGCAGAGTGCTCAAATATTGACAACTCAAACTGTGAGCCTAATGGAGACCATAAAAGAAAACAGTCTGAAGTATTGTCTGAAACACAATATCCGAATAAGTCGCCCAAAAATGATCAAGGTCAGTCATCATCAAATAAAAGTAAAGGCTCCTTCAAGAAACCGAAGGGTGGAAAGCTGGACTACAACATTCTTAGGCCATCAAAGAGTCAAACCAAAAAAGGTAGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

185

Amino Acids

20.22

Weight (kDa)

9.51

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 111 3.2e-10 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 550
AciI CCGC 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 414
AfiI CCNNNNNNNGG 4 cut(s) 110, 175, 176, 494
AgsI TTSAA 2 cut(s) 214, 481
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 3 cut(s) 16, 120, 502
AluI AGCT 3 cut(s) 16, 120, 502
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 1 cut(s) 366
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 125, 254
AseI ATTAAT 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 88, 176
AvaII GGWCC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 112, 266
BccI CCATC 3 cut(s) 67, 101, 532
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 1 cut(s) 300
BisI GCNGC 2 cut(s) 126, 255
BlsI GCNGC 2 cut(s) 127, 256
Bme1390I CCNGG 2 cut(s) 177, 243
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 2 cut(s) 313, 475
BmrFI CCNGG 2 cut(s) 177, 243
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 165
BoxI GACNNNNGTC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 175, 176, 494
Bse1I ACTGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 4 cut(s) 110, 175, 176, 494
BseMII CTCAG 2 cut(s) 20, 74
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 112, 266
BshFI GGCC 1 cut(s) 523
BsiHKAI GWGCWC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 4 cut(s) 110, 175, 176, 494
BsmAI GTCTC 1 cut(s) 366
BsnI GGCC 1 cut(s) 523
Bso31I GGTCTC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 1 cut(s) 439
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 2 cut(s) 21, 73
BspLI GGNNCC 2 cut(s) 313, 475
BspTNI GGTCTC 1 cut(s) 366
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 3 cut(s) 209, 359, 390
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 4 cut(s) 29, 60, 137, 518
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 243
BstPAI GACNNNNGTC 1 cut(s) 171
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 175, 241
BstV1I GCAGC 2 cut(s) 112, 266
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 523
BtsCI GGATG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 252
CaiI CAGNNNCTG 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 312
CseI GACGC 1 cut(s) 252
CviAII CATG 1 cut(s) 46
CviJI RGCY 8 cut(s) 16, 120, 250, 257, 364, 474, 502, 523
CviKI_1 RGCY 8 cut(s) 16, 120, 250, 257, 364, 474, 502, 523
DdeI CTNAG 4 cut(s) 29, 60, 137, 518
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 414
Eco91I GGTNACC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 312
EcoO65I GGTNACC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 47, 282, 378, 556
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 126, 255
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 126, 255
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 126, 255
HaeIII GGCC 1 cut(s) 523
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 252
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 1 cut(s) 532
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 88, 176
Hpy166II GTNNAC 2 cut(s) 297, 551
Hpy188I TCNGA 5 cut(s) 30, 63, 394, 406, 420
Hpy188III TCNNGA 1 cut(s) 481
Hpy8I GTNNAC 2 cut(s) 297, 551
HpyAV CCTTC 3 cut(s) 155, 484, 487
HpyCH4III ACNGT 3 cut(s) 209, 359, 390
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 4 cut(s) 29, 60, 137, 518
Hsp92II CATG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 3 cut(s) 13, 179, 479
LpnPI CCDG 9 cut(s) 34, 117, 184, 189, 228, 255, 258, 264, 488
Lsp1109I GCAGC 2 cut(s) 112, 266
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 5 cut(s) 91, 101, 104, 258, 261
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 2 cut(s) 183, 222
MlyI GAGTC 1 cut(s) 541
MnlI CCTC 4 cut(s) 24, 79, 268, 325
MseI TTAA 4 cut(s) 38, 186, 204, 221
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 177, 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 1 cut(s) 177
NdeII GATC 1 cut(s) 439
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 313, 475
NmuCI GTSAC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 127, 256
PleI GAGTC 1 cut(s) 540
PpsI GAGTC 1 cut(s) 540
PpuMI RGGWCCY 1 cut(s) 312
PshAI GACNNNNGTC 1 cut(s) 171
PshBI ATTAAT 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 241
PspEI GGTNACC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 313, 475
PspPI GGNCC 1 cut(s) 312
PspPPI RGGWCCY 1 cut(s) 312
PstNI CAGNNNCTG 1 cut(s) 260
SaqAI TTAA 4 cut(s) 38, 186, 204, 221
SatI GCNGC 2 cut(s) 126, 255
Sau3AI GATC 1 cut(s) 439
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 2 cut(s) 177, 243
SduI GDGCHC 1 cut(s) 338
SetI ASST 7 cut(s) 18, 106, 122, 166, 448, 504, 550
SfaNI GCATC 1 cut(s) 285
SinI GGWCC 1 cut(s) 312
Sse9I AATT 2 cut(s) 183, 222
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 343
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 175, 241
TaaI ACNGT 3 cut(s) 209, 359, 390
TasI AATT 2 cut(s) 183, 222
Tru1I TTAA 4 cut(s) 38, 186, 204, 221
Tru9I TTAA 4 cut(s) 38, 186, 204, 221
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 2 cut(s) 125, 254
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 34, 189
VpaK11BI GGWCC 1 cut(s) 312
VspI ATTAAT 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 550
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.