Rh5BG448200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011456
Physical Location & Seq
Forward (+)
71871526 .. 71874653
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG448200.1

Sequence Viewer

Length: 564 bp
ATGGCGAAGCGGGAGCTTTCCAGCACTCTGAGGAACTTAAAGTTCATGCAAAGGGCAACTCAGAGAGAGGAGATGGTGAAGAAAGAAGAAGAAGAAGAAGAAGTCAAACCTGATGGGGGTTTTAGCTCTGCTGCTACCCAACTAAGAAAGTGTGTGGTTGTAATGGAAGGTGACCCCAGTCCGGGAGCAATTAAAGGGCGAATTTCATTTAACGGTTTCAATCCATTAATTGATAAACTGAATAACCCTGGTCAGCTAGCAGCCTCTGCGTCTTCTTCTGGCATCCAAAATGAAAGAGTGTCAACTAGAGAAAGTGGGTCCTCAATGGACGAAGCAGAGTGCTCAAATATTGACAACTCAAACTGTGAGCCTAATGGAGACCATAAAAGAAAACAGTCTGAAGTATTGTCTGAAACACAATATCCGAATAAGTCGCCCAAAAATGACCAAGGTCAGTCATCATCAAATAAAAGTAAAGGCTCCTTCAAGAAACCGAAGGGTGGAAAGCTGGACTACAACATTCTTAGGCCATCAAAGAGTCAAACCAAAAAAGCTAATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

187

Amino Acids

20.52

Weight (kDa)

9.06

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 113 3.9e-11 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 10
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 420
AfiI CCNNNNNNNGG 4 cut(s) 116, 181, 182, 500
AgsI TTSAA 2 cut(s) 220, 487
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 5 cut(s) 16, 126, 256, 508, 554
AluI AGCT 5 cut(s) 16, 126, 256, 508, 554
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 372
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 527
ApeKI GCWGC 2 cut(s) 131, 260
ApoI RAATTY 1 cut(s) 201
AseI ATTAAT 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 88, 182
AsuNHI GCTAGC 1 cut(s) 256
AvaII GGWCC 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 118, 272
BccI CCATC 3 cut(s) 67, 107, 538
BciT130I CCWGG 1 cut(s) 249
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 3 cut(s) 257, 306, 562
BisI GCNGC 2 cut(s) 132, 261
BlsI GCNGC 2 cut(s) 133, 262
Bme1390I CCNGG 2 cut(s) 183, 249
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 2 cut(s) 319, 481
BmrFI CCNGG 2 cut(s) 183, 249
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 291
BmtI GCTAGC 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 171
BoxI GACNNNNGTC 2 cut(s) 177, 450
BpiI GAAGAC 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 247, 448
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 181, 182, 500
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 247, 448
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 4 cut(s) 116, 181, 182, 500
BseMII CTCAG 2 cut(s) 20, 74
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 118, 272
BshFI GGCC 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 4 cut(s) 116, 181, 182, 500
BsmAI GTCTC 1 cut(s) 372
BsnI GGCC 1 cut(s) 529
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 344
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 2 cut(s) 21, 73
BspLI GGNNCC 2 cut(s) 319, 481
BspOI GCTAGC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 372
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 247, 448
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 215, 365, 396
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 29, 60, 143, 524
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 372
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 249
BstPAI GACNNNNGTC 2 cut(s) 177, 450
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 181, 247
BstV1I GCAGC 2 cut(s) 118, 272
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 529
BtsCI GGATG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 318
CseI GACGC 1 cut(s) 258
CviAII CATG 1 cut(s) 46
CviJI RGCY 9 cut(s) 16, 126, 256, 263, 370, 480, 508, 529, 554
CviKI_1 RGCY 9 cut(s) 16, 126, 256, 263, 370, 480, 508, 529, 554
DdeI CTNAG 4 cut(s) 29, 60, 143, 524
Eco130I CCWWGG 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 420
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 47, 384
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 132, 261
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 132, 261
FspBI CTAG 3 cut(s) 257, 306, 562
GluI GCNGC 2 cut(s) 132, 261
HaeIII GGCC 1 cut(s) 529
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 258
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 1 cut(s) 538
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 88, 182
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 5 cut(s) 30, 63, 400, 412, 426
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 3 cut(s) 161, 490, 493
HpyCH4III ACNGT 3 cut(s) 215, 365, 396
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 4 cut(s) 29, 60, 143, 524
Hsp92II CATG 1 cut(s) 49
LmnI GCTCC 3 cut(s) 13, 185, 485
LpnPI CCDG 8 cut(s) 34, 123, 190, 195, 234, 261, 264, 494
Lsp1109I GCAGC 2 cut(s) 118, 272
LweI GCATC 1 cut(s) 291
MaeI CTAG 3 cut(s) 257, 306, 562
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 8 cut(s) 91, 98, 101, 104, 107, 110, 264, 267
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 3 cut(s) 189, 201, 228
MlyI GAGTC 1 cut(s) 547
MnlI CCTC 4 cut(s) 24, 61, 274, 331
MseI TTAA 4 cut(s) 38, 192, 210, 227
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 183, 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 183
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 319, 481
NmuCI GTSAC 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 2 cut(s) 133, 262
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
PpuMI RGGWCCY 1 cut(s) 318
PshAI GACNNNNGTC 2 cut(s) 177, 450
PshBI ATTAAT 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 319, 481
PspPI GGNCC 1 cut(s) 318
PspPPI RGGWCCY 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 266
SaqAI TTAA 4 cut(s) 38, 192, 210, 227
SatI GCNGC 2 cut(s) 132, 261
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 2 cut(s) 183, 249
SduI GDGCHC 1 cut(s) 344
SetI ASST 8 cut(s) 18, 112, 128, 172, 258, 454, 510, 556
SfaNI GCATC 1 cut(s) 291
SinI GGWCC 1 cut(s) 318
Sse9I AATT 3 cut(s) 189, 201, 228
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 349
SspMI CTAG 3 cut(s) 257, 306, 562
StyD4I CCNGG 2 cut(s) 181, 247
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 3 cut(s) 215, 365, 396
TasI AATT 3 cut(s) 189, 201, 228
Tru1I TTAA 4 cut(s) 38, 192, 210, 227
Tru9I TTAA 4 cut(s) 38, 192, 210, 227
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 131, 260
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 34, 195, 306
VpaK11BI GGWCC 1 cut(s) 318
VspI ATTAAT 1 cut(s) 227
XapI RAATTY 1 cut(s) 201
XspI CTAG 3 cut(s) 257, 306, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.