FvH4_3g36750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011456
Physical Location & Seq
Reverse (-)
31496761 .. 31499528
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36750.t1

Sequence Viewer

Length: 648 bp
ATGGCGAAGCGGGAGCTTTCCAGCACTTTGAAGAACTTAAAGTTTATGCAAAGGGCAACTCAGAGAGAGGAGAAGGTGAAGAAAGAAGAAGAAGTAGTAGTCAAATCTGATAGTGGTTTTGGCTCTGCTGCTACCCAACTAAGAAAGTGTGTGGTCGTAATGGAAGGTGACCCCAATCCGGGAGCAATTAAAGGGCGAATGTCATTTAAGGGTTTTAATCCATTAATTGATAAACTGAATAACCCTGGTGAGCCAGCAGCCTCTGCATCTTCTTCTGGCATCCAAAGTGAAAGAGTGTCAAATAGAGAAAATGGGTCCTCTATGGATGAAGCAGAGTGCTCAAATATTGACAACTCAAACTGTGAGCCTAATGGAGACCATAAAAGAAAACAGTCCGAAGTAGTGTCTGAAACACAGTATCCGAATAAATCGCCCAAAAATGATCAAGGTCAGTCATCACCAAATAGAAGTAAAGGCTCTTTCAAGAAACCAAAGGGTGGAAAGCTGGACTACAACATTCTTAGGCCGACAAAGAGTCAAACCAAAAGAGTAAATGCTATATATGTTACGATTGGGTGGAAGCAACCTGACAAAATGCAAAATACGAAAGCTTCCAGTAGTACTGGGGCTCACGTGACAGTATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

216

Amino Acids

23.53

Weight (kDa)

9.59

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 110 9.5e-12 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 497
AciI CCGC 1 cut(s) 10
AcvI CACGTG 1 cut(s) 634
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 3 cut(s) 178, 179, 497
AgsI TTSAA 2 cut(s) 31, 484
AhdI GACNNNNNGTC 1 cut(s) 534
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 3 cut(s) 16, 505, 611
AluI AGCT 3 cut(s) 16, 505, 611
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 369
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 128, 257
AseI ATTAAT 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 4 cut(s) 88, 179, 260, 450
AvaII GGWCC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 631
BbrPI CACGTG 1 cut(s) 634
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 115, 269
BciT130I CCWGG 1 cut(s) 246
BciVI GTATCC 1 cut(s) 429
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 369
BfuI GTATCC 1 cut(s) 429
BisI GCNGC 2 cut(s) 129, 258
BlsI GCNGC 2 cut(s) 130, 259
BmcAI AGTACT 1 cut(s) 622
Bme1390I CCNGG 2 cut(s) 180, 246
Bme18I GGWCC 1 cut(s) 315
BmeRI GACNNNNNGTC 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 180, 246
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 2 cut(s) 275, 288
BmuI ACTGGG 1 cut(s) 633
BpuMI CCSGG 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 634
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 179, 497
Bse1I ACTGG 2 cut(s) 615, 628
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 279, 331
BseLI CCNNNNNNNGG 3 cut(s) 178, 179, 497
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 2 cut(s) 615, 628
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 115, 269
BshFI GGCC 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 3 cut(s) 178, 179, 497
BsmAI GTCTC 1 cut(s) 369
BsnI GGCC 1 cut(s) 526
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 341, 631
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 526
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 615, 628
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 4 cut(s) 362, 393, 417, 640
BstAPI GCANNNNNTGC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 60, 140, 521
BstEII GGTNACC 1 cut(s) 167
BstF5I GGATG 2 cut(s) 279, 331
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 246
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 178, 244
BstV1I GCAGC 2 cut(s) 115, 269
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 1 cut(s) 526
BtsCI GGATG 2 cut(s) 279, 331
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 621
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 3 cut(s) 60, 140, 521
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
DriI GACNNNNNGTC 1 cut(s) 534
Eam1105I GACNNNNNGTC 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 631
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 315
Eco72I CACGTG 1 cut(s) 634
Eco91I GGTNACC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 631
FaiI YATR 7 cut(s) 47, 323, 381, 560, 562, 564, 643
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 129, 258
FokI GGATG 2 cut(s) 266, 338
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 2 cut(s) 129, 258
GluI GCNGC 2 cut(s) 129, 258
HaeIII GGCC 1 cut(s) 526
HapII CCGG 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 1 cut(s) 535
HpaII CCGG 1 cut(s) 179
HphI GGTGA 4 cut(s) 88, 179, 260, 450
Hpy188I TCNGA 5 cut(s) 63, 109, 397, 409, 423
Hpy188III TCNNGA 1 cut(s) 484
HpyAV CCTTC 2 cut(s) 67, 158
HpyCH4III ACNGT 4 cut(s) 362, 393, 417, 640
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 3 cut(s) 49, 266, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 3 cut(s) 60, 140, 521
HpySE526I ACGT 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 1 cut(s) 442
LmnI GCTCC 2 cut(s) 13, 182
Lsp1109I GCAGC 2 cut(s) 115, 269
LweI GCATC 2 cut(s) 275, 288
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 3 cut(s) 167, 565, 634
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 6 cut(s) 43, 91, 98, 101, 261, 264
MhlI GDGCHC 2 cut(s) 341, 631
MluCI AATT 2 cut(s) 186, 225
MlyI GAGTC 1 cut(s) 544
MnlI CCTC 3 cut(s) 61, 271, 328
MseI TTAA 5 cut(s) 38, 189, 207, 216, 224
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 180, 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 442
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 2 cut(s) 167, 634
PflMI CCANNNNNTGG 1 cut(s) 497
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 2 cut(s) 130, 259
PleI GAGTC 1 cut(s) 543
PmaCI CACGTG 1 cut(s) 634
PmlI CACGTG 1 cut(s) 634
PpsI GAGTC 1 cut(s) 543
Ppu21I YACGTR 1 cut(s) 634
PpuMI RGGWCCY 1 cut(s) 315
PshBI ATTAAT 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 244
PspCI CACGTG 1 cut(s) 634
PspEI GGTNACC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 315
PspPPI RGGWCCY 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SaqAI TTAA 5 cut(s) 38, 189, 207, 216, 224
SatI GCNGC 2 cut(s) 129, 258
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 1 cut(s) 315
ScaI AGTACT 1 cut(s) 622
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 2 cut(s) 180, 246
SduI GDGCHC 2 cut(s) 341, 631
SetI ASST 8 cut(s) 18, 78, 169, 451, 507, 589, 613, 636
SfaNI GCATC 2 cut(s) 275, 288
SinI GGWCC 1 cut(s) 315
Sse9I AATT 2 cut(s) 186, 225
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 178, 244
TaaI ACNGT 4 cut(s) 362, 393, 417, 640
TaiI ACGT 1 cut(s) 636
TasI AATT 2 cut(s) 186, 225
TatI WGTACW 1 cut(s) 620
Tru1I TTAA 5 cut(s) 38, 189, 207, 216, 224
Tru9I TTAA 5 cut(s) 38, 189, 207, 216, 224
TseFI GTSAC 2 cut(s) 167, 634
TseI GCWGC 2 cut(s) 128, 257
Tsp45I GTSAC 2 cut(s) 167, 634
TspDTI ATGAA 1 cut(s) 342
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 315
VspI ATTAAT 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.