pycom03g07040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0011456
Physical Location & Seq
Forward (+)
5586604 .. 5588678
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07040.5

Sequence Viewer

Length: 810 bp
ATGATTATGATCTTGGCCCAAACCCTGGCCCAAAAGAAGCCCATCGCTAGAGAGCGTCAAATTTGTTTTTTCGTTCGGTGCTCGTCCCCGAAAGAACCCTTGCTTCCTCCCTCTTCGTCTTCTCTTCCCGCAGTTGCAGAACAAATAAAGGAAAGCTTCTTCATTCACGGCGGAGCCTCCGCAGAGAAATTACCGCTTAAAGTTAACGACTTCAATTCTCAATTGGATTCCAGAGTGAAAACCCAGAAGGCTAATATGGCGAAGCGAGAGCTTTCCAGCACTCTCAGGAACTTAAAGTTTATGCAAAGAGCAACTCAGAGAGAAGTGAAGAAAGAAGAAGATGTCAAACCTGCTGTGGATTTTGCTTTCCCTTCCCACCAAATACGAAAGTGTGTGGTCATAATGGAAGGTGACCCTCAACCTGAAGCAGTTAGAGGGCGGATGTCGTTTCAAAGTTTCAATCCATCGATTGATAAACTGAATCAAGTATCGGAAAACCCTGGTCAGCCTGCTGCCACGTCTTCTAGCATCCAAAGTGAAAAGGTGTCATTTAGAGACAATGGATCCTCGATGGATGAAGCAGAGTGCTCAAATACTGATAAGTCGAACGGTGAGCCTAATGGAGACCATAAAAGAAAACAGTCCGAAGTAGGATCTGGGAAACAACACCCGAACAAGTCACCCAAACTTAATCAAGTTGGTCAGCAGTCGTCACCAAATACAAGTAAGGGCTCCTTCAGGAAACCAAGGGGTGAAAACCTGAACTGGAATGTTCTTAGACCATCAAAGGGTCAAAACAAAAGAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

270

Amino Acids

29.85

Weight (kDa)

9.82

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 25
AciI CCGC 5 cut(s) 129, 171, 180, 194, 439
AclWI GGATC 3 cut(s) 558, 571, 661
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 444, 721
AfiI CCNNNNNNNGG 2 cut(s) 25, 788
AgsI TTSAA 3 cut(s) 214, 452, 460
AjiI CACGTC 1 cut(s) 519
AjnI CCWGG 2 cut(s) 24, 499
AluBI AGCT 2 cut(s) 156, 271
AluI AGCT 2 cut(s) 156, 271
Alw21I GWGCWC 2 cut(s) 83, 590
Alw26I GTCTC 2 cut(s) 549, 618
AlwI GGATC 3 cut(s) 558, 571, 661
AoxI GGCC 2 cut(s) 15, 27
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 16, 28
AsuHPI GGTGA 5 cut(s) 422, 623, 672, 705, 764
BamHI GGATCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 734
BbsI GAAGAC 2 cut(s) 111, 513
Bbv12I GWGCWC 2 cut(s) 83, 590
BbvI GCAGC 1 cut(s) 499
BccI CCATC 4 cut(s) 50, 472, 565, 790
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 26, 501
BcoDI GTCTC 2 cut(s) 549, 618
BfaI CTAG 2 cut(s) 48, 525
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
Bme1390I CCNGG 2 cut(s) 26, 501
BmgBI CACGTC 1 cut(s) 519
BmgT120I GGNCC 2 cut(s) 16, 28
BmiI GGNNCC 3 cut(s) 175, 565, 733
BmrFI CCNGG 2 cut(s) 26, 501
BmsI GCATC 1 cut(s) 537
BpiI GAAGAC 2 cut(s) 111, 513
Bsa29I ATCGAT 1 cut(s) 467
BsaBI GATNNNNATC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 3 cut(s) 24, 499, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 788
Bse1I ACTGG 1 cut(s) 770
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 26, 501
BseCI ATCGAT 1 cut(s) 467
BseDI CCNNGG 3 cut(s) 24, 499, 746
BseGI GGATG 3 cut(s) 447, 528, 580
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 25, 788
BseMII CTCAG 2 cut(s) 298, 329
BseNI ACTGG 1 cut(s) 770
BseXI GCAGC 1 cut(s) 499
BshFI GGCC 2 cut(s) 17, 29
BshVI ATCGAT 1 cut(s) 467
BsiHKAI GWGCWC 2 cut(s) 83, 590
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 25, 788
BsmAI GTCTC 2 cut(s) 549, 618
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 2 cut(s) 17, 29
Bso31I GGTCTC 1 cut(s) 618
Bsp1286I GDGCHC 3 cut(s) 83, 590, 734
Bsp143I GATC 3 cut(s) 9, 563, 653
BspACI CCGC 5 cut(s) 129, 171, 180, 194, 439
BspANI GGCC 2 cut(s) 17, 29
BspCNI CTCAG 2 cut(s) 297, 328
BspDI ATCGAT 1 cut(s) 467
BspLI GGNNCC 3 cut(s) 175, 565, 733
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 3 cut(s) 558, 571, 661
BspTNI GGTCTC 1 cut(s) 618
BsrI ACTGG 1 cut(s) 770
BssECI CCNNGG 3 cut(s) 24, 499, 746
BssMI GATC 3 cut(s) 9, 563, 653
BssT1I CCWWGG 1 cut(s) 746
Bst2UI CCWGG 2 cut(s) 26, 501
Bst4CI ACNGT 2 cut(s) 611, 642
Bst6I CTCTTC 2 cut(s) 118, 129
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 284, 315, 776
BstEII GGTNACC 1 cut(s) 410
BstF5I GGATG 3 cut(s) 447, 528, 580
BstKTI GATC 3 cut(s) 12, 566, 656
BstMAI GTCTC 2 cut(s) 549, 618
BstMBI GATC 3 cut(s) 9, 563, 653
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstNI CCWGG 2 cut(s) 26, 501
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 24, 499
BstV1I GCAGC 1 cut(s) 499
BstV2I GAAGAC 2 cut(s) 111, 513
BstX2I RGATCY 2 cut(s) 563, 653
BstYI RGATCY 2 cut(s) 563, 653
Bsu15I ATCGAT 1 cut(s) 467
BsuRI GGCC 2 cut(s) 17, 29
BsuTUI ATCGAT 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 28
BtrI CACGTC 1 cut(s) 519
BtsCI GGATG 3 cut(s) 447, 528, 580
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 510
Cfr13I GGNCC 2 cut(s) 16, 28
ClaI ATCGAT 1 cut(s) 467
CseI GACGC 1 cut(s) 44
DdeI CTNAG 3 cut(s) 284, 315, 776
DpnI GATC 3 cut(s) 11, 565, 655
DpnII GATC 3 cut(s) 9, 563, 653
Eam1104I CTCTTC 2 cut(s) 118, 129
EarI CTCTTC 2 cut(s) 118, 129
EciI GGCGGA 2 cut(s) 186, 454
Eco130I CCWWGG 1 cut(s) 746
Eco24I GRGCYC 1 cut(s) 734
Eco31I GGTCTC 1 cut(s) 618
Eco57I CTGAAG 2 cut(s) 444, 721
Eco91I GGTNACC 1 cut(s) 410
EcoO65I GGTNACC 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 24, 499
EcoT14I CCWWGG 1 cut(s) 746
EcoT38I GRGCYC 1 cut(s) 734
ErhI CCWWGG 1 cut(s) 746
FaiI YATR 5 cut(s) 8, 257, 302, 401, 630
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 719, 751
FaqI GGGAC 1 cut(s) 70
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 3 cut(s) 454, 515, 587
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 2 cut(s) 48, 525
GluI GCNGC 1 cut(s) 513
HaeIII GGCC 2 cut(s) 17, 29
HgaI GACGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 2 cut(s) 227, 481
HpaI GTTAAC 1 cut(s) 205
HphI GGTGA 5 cut(s) 422, 623, 672, 705, 764
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 3 cut(s) 318, 493, 646
Hpy188III TCNNGA 3 cut(s) 231, 286, 739
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 4 cut(s) 241, 381, 401, 745
HpyCH4III ACNGT 2 cut(s) 611, 642
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 2 cut(s) 137, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 3 cut(s) 284, 315, 776
HpySE526I ACGT 1 cut(s) 518
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 9, 563, 653
LmnI GCTCC 2 cut(s) 173, 737
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 537
MaeI CTAG 2 cut(s) 48, 525
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 3 cut(s) 410, 678, 711
MalI GATC 3 cut(s) 11, 565, 655
MboI GATC 3 cut(s) 9, 563, 653
MboII GAAGA 8 cut(s) 105, 111, 116, 151, 340, 347, 350, 513
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 2 cut(s) 563, 653
MhlI GDGCHC 3 cut(s) 83, 590, 734
MluCI AATT 4 cut(s) 60, 188, 214, 221
MnlI CCTC 7 cut(s) 117, 121, 187, 426, 428, 577, 797
MseI TTAA 4 cut(s) 198, 204, 293, 690
MspR9I CCNGG 2 cut(s) 26, 501
MunI CAATTG 1 cut(s) 221
MvaI CCWGG 2 cut(s) 26, 501
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 3 cut(s) 9, 563, 653
NlaIV GGNNCC 3 cut(s) 175, 565, 733
NmuCI GTSAC 3 cut(s) 410, 678, 711
PfeI GAWTC 2 cut(s) 227, 481
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 1 cut(s) 514
Psp6I CCWGG 2 cut(s) 24, 499
PspEI GGTNACC 1 cut(s) 410
PspGI CCWGG 2 cut(s) 24, 499
PspN4I GGNNCC 3 cut(s) 175, 565, 733
PspPI GGNCC 2 cut(s) 16, 28
PsuI RGATCY 2 cut(s) 563, 653
SaqAI TTAA 4 cut(s) 198, 204, 293, 690
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 3 cut(s) 9, 563, 653
Sau96I GGNCC 2 cut(s) 16, 28
ScrFI CCNGG 2 cut(s) 26, 501
SduI GDGCHC 3 cut(s) 83, 590, 734
SetI ASST 8 cut(s) 158, 273, 352, 412, 424, 521, 546, 762
SfaNI GCATC 1 cut(s) 537
Sse9I AATT 4 cut(s) 60, 188, 214, 221
SsiI CCGC 5 cut(s) 129, 171, 180, 194, 439
SspMI CTAG 2 cut(s) 48, 525
StyD4I CCNGG 2 cut(s) 24, 499
StyI CCWWGG 1 cut(s) 746
TaaI ACNGT 2 cut(s) 611, 642
TaiI ACGT 1 cut(s) 521
TaqI TCGA 3 cut(s) 467, 569, 605
TasI AATT 4 cut(s) 60, 188, 214, 221
TfiI GAWTC 2 cut(s) 227, 481
Tru1I TTAA 4 cut(s) 198, 204, 293, 690
Tru9I TTAA 4 cut(s) 198, 204, 293, 690
TseFI GTSAC 3 cut(s) 410, 678, 711
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 3 cut(s) 410, 678, 711
TspDTI ATGAA 2 cut(s) 151, 591
Van91I CCANNNNNTGG 1 cut(s) 25
XapI RAATTY 1 cut(s) 60
XspI CTAG 2 cut(s) 48, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.