Rroxscaffold_1G00015370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011456
Physical Location & Seq
Reverse (-)
19153655 .. 19155427
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015370.1

Sequence Viewer

Length: 708 bp
ATGGCGAAGCGGGAGCTTTCCAGCACTCTGAGGAACTTAAAGTTCATGCAAAGGGCAACTCAGAGAGAGGAGATGGTGAAGAAAGAAGAAGAAGAAGTCAAACCTGATGGGGGTTTTAGCTCTGCTGCTACCCAACTAAGAAAGTGTGTGGTCATAATGGAAGGTGACCCCAGTCCGGGAGCAATTAAAGGGCGAATTTCATTTAACGGTTTCAATCCATTAATTGATAAACTGAATAACCCTGGTCAGCCAGCGGCCTCTGCGTCTTCTTCTGGTATCCAAAGTGAAAGAGTGTCAACTAGGTTCGTGATCCGAAATTTCTTGTCTCTTGTCTCTATTTCTGGGATTTTTGTTCATTGGGTTAAGGAGACTACAAAACCTGAGTGGCGAATTTGTTCCAAACTTTGGCTTCTGCTTTCCTATATTCTTTCTTCTATTTGCATTTTTCACAGAGAAAGTGGGTCCTCAATGGACGAAGCAGAGTGCTCAAATATTGACAACTCAAACTGTGAGCCTAATGGAGACCATAAAAGAAAACAGTCTGAAGTATTGTCTGAAACACAATATCCGAATAAATCGCCCAAAAATGATCAAGGTCAGTCATCATCAAATAGAAGTAAAGGCTCCTTCAAGAAACCAAAGGGTGGAAAGCTGGACTACAACATTCTTAGGCCATCAAAGAGTCAAACCAAAAAAGGTAGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

235

Amino Acids

26.23

Weight (kDa)

9.64

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 85 3e-09 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 405, 644
AccI GTMKAC 1 cut(s) 700
AciI CCGC 2 cut(s) 10, 254
AclWI GGATC 1 cut(s) 304
AcsI RAATTY 3 cut(s) 195, 316, 390
AcuI CTGAAG 1 cut(s) 564
AfiI CCNNNNNNNGG 5 cut(s) 110, 175, 176, 405, 644
AgsI TTSAA 2 cut(s) 214, 631
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 3 cut(s) 16, 120, 652
AluI AGCT 3 cut(s) 16, 120, 652
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 4 cut(s) 330, 337, 362, 516
AlwI GGATC 1 cut(s) 304
AoxI GGCC 2 cut(s) 255, 671
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 3 cut(s) 195, 316, 390
AseI ATTAAT 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 462
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 88, 176
AvaII GGWCC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 112
BccI CCATC 3 cut(s) 67, 101, 682
BciT130I CCWGG 1 cut(s) 243
BciVI GTATCC 1 cut(s) 287
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 4 cut(s) 330, 337, 362, 516
BfaI CTAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 2 cut(s) 126, 255
BlsI GCNGC 2 cut(s) 127, 256
Bme1390I CCNGG 2 cut(s) 177, 243
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 2 cut(s) 463, 625
BmrFI CCNGG 2 cut(s) 177, 243
BmrI ACTGGG 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 165
BoxI GACNNNNGTC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 175, 176, 405, 644
Bse1I ACTGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 5 cut(s) 110, 175, 176, 405, 644
BseMII CTCAG 3 cut(s) 20, 74, 372
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 2 cut(s) 257, 673
BsiHKAI GWGCWC 1 cut(s) 488
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 5 cut(s) 110, 175, 176, 405, 644
BsmAI GTCTC 4 cut(s) 330, 337, 362, 516
BsnI GGCC 2 cut(s) 257, 673
Bso31I GGTCTC 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 2 cut(s) 309, 589
BspACI CCGC 2 cut(s) 10, 254
BspANI GGCC 2 cut(s) 257, 673
BspCNI CTCAG 3 cut(s) 21, 73, 373
BspLI GGNNCC 2 cut(s) 463, 625
BspPI GGATC 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 516
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 309, 589
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 3 cut(s) 209, 509, 540
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 5 cut(s) 29, 60, 137, 381, 668
BstEII GGTNACC 1 cut(s) 164
BstKTI GATC 2 cut(s) 312, 592
BstMAI GTCTC 4 cut(s) 330, 337, 362, 516
BstMBI GATC 2 cut(s) 309, 589
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 243
BstPAI GACNNNNGTC 1 cut(s) 171
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 175, 241
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 258
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 2 cut(s) 257, 673
Cac8I GCNNGC 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 462
CseI GACGC 1 cut(s) 252
CviAII CATG 1 cut(s) 46
CviJI RGCY 9 cut(s) 16, 120, 250, 257, 409, 514, 624, 652, 673
CviKI_1 RGCY 9 cut(s) 16, 120, 250, 257, 409, 514, 624, 652, 673
DdeI CTNAG 5 cut(s) 29, 60, 137, 381, 668
DpnI GATC 2 cut(s) 311, 591
DpnII GATC 2 cut(s) 309, 589
Eco31I GGTCTC 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 564
Eco91I GGTNACC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 462
EcoO65I GGTNACC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 49
FaiI YATR 5 cut(s) 47, 155, 423, 528, 706
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 2 cut(s) 126, 255
Fsp4HI GCNGC 2 cut(s) 126, 255
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 126, 255
HaeIII GGCC 2 cut(s) 257, 673
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 252
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 1 cut(s) 682
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 88, 176
Hpy166II GTNNAC 2 cut(s) 297, 701
Hpy188I TCNGA 6 cut(s) 30, 63, 314, 544, 556, 570
Hpy188III TCNNGA 2 cut(s) 307, 631
Hpy8I GTNNAC 2 cut(s) 297, 701
HpyAV CCTTC 2 cut(s) 155, 637
HpyCH4III ACNGT 3 cut(s) 209, 509, 540
HpyCH4V TGCA 2 cut(s) 49, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 5 cut(s) 29, 60, 137, 381, 668
Hsp92II CATG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 2 cut(s) 309, 589
LmnI GCTCC 3 cut(s) 13, 179, 629
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 311, 591
MboI GATC 2 cut(s) 309, 589
MboII GAAGA 7 cut(s) 91, 98, 101, 104, 258, 261, 423
MhlI GDGCHC 1 cut(s) 488
MluCI AATT 5 cut(s) 183, 195, 222, 316, 390
MlyI GAGTC 1 cut(s) 691
MnlI CCTC 4 cut(s) 24, 61, 268, 475
MroXI GAANNNNTTC 1 cut(s) 394
MseI TTAA 5 cut(s) 38, 186, 204, 221, 363
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 177, 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 1 cut(s) 177
NdeII GATC 2 cut(s) 309, 589
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 463, 625
NmuCI GTSAC 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 394
PflMI CCANNNNNTGG 2 cut(s) 405, 644
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 127, 256
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
PpuMI RGGWCCY 1 cut(s) 462
PshAI GACNNNNGTC 1 cut(s) 171
PshBI ATTAAT 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 241
PspEI GGTNACC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 463, 625
PspPI GGNCC 1 cut(s) 462
PspPPI RGGWCCY 1 cut(s) 462
SaqAI TTAA 5 cut(s) 38, 186, 204, 221, 363
SatI GCNGC 2 cut(s) 126, 255
Sau3AI GATC 2 cut(s) 309, 589
Sau96I GGNCC 1 cut(s) 462
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 2 cut(s) 177, 243
SduI GDGCHC 1 cut(s) 488
SetI ASST 9 cut(s) 18, 106, 122, 166, 305, 382, 598, 654, 700
SinI GGWCC 1 cut(s) 462
Sse9I AATT 5 cut(s) 183, 195, 222, 316, 390
SsiI CCGC 2 cut(s) 10, 254
SspI AATATT 1 cut(s) 493
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 175, 241
TaaI ACNGT 3 cut(s) 209, 509, 540
TasI AATT 5 cut(s) 183, 195, 222, 316, 390
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 5 cut(s) 38, 186, 204, 221, 363
Tru9I TTAA 5 cut(s) 38, 186, 204, 221, 363
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 34, 189, 344
Van91I CCANNNNNTGG 2 cut(s) 405, 644
VpaK11BI GGWCC 1 cut(s) 462
VspI ATTAAT 1 cut(s) 221
XapI RAATTY 3 cut(s) 195, 316, 390
XmiI GTMKAC 1 cut(s) 700
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.