Rh5DG461700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011456
Physical Location & Seq
Forward (+)
73284801 .. 73286281
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG461700.1

Sequence Viewer

Length: 744 bp
ATGGCGAAGCGGGAGCTTTCCAGCACTCTGAGGAACTTAAAGTTCATGCAAAGGGCAACTCAGAGAGAGGAGATGGTGAAGAAAGAAGAAGAAGAAGAAGTCAAACCTGATGGGGGTTTTAGCTCTGCTGCTACCCAACTAAGAAAGTGTGTGGTTGTAATGGAAGGCGACCCCAGTCCGGGAGCAATTAAAGGGCGAATTTCATTTAACGGTTTCAATCCATTAATTGATAAACTGAATAACCCTGGTCAGCCAGCAGCCTCTGCGTCTTCTTCTGGCATCCAAAATGAAAGAGTGTCAACTAGGTTCGTGATCCGAAATTTCAATTTATTTTACTTTTTGGTTTCTATTTGTAGGAATCTCTTGTCTCTATTTCTGGGATTTTTTGTTCATTGGGTTAAGGAGACTAAAAAACCTGAGCGGCAAATTTGTTCCAAACTTTGGCTTCTGCTTTCCTATATTCTTTCTTCTATTTGCATTTTTCACAGAGAAAGTGGGTCCTCAATGGACGAAGCAGAGTGCTCAAATATTGACAACTCAAACTGTGAGCCTAATGGAGACCATAAAAGAAAACAGTCTGAAGTATTGTCTGAAACACAATATCCGAATAAGTCGCCCAAAAATGATCAAGGTCAGTCATCATCAAATAAAAGTAAAGGCTCCTTCAAGAAACCGAAGGGTGGAAAGCTGGACTACAACATTCTTAGGCCATCAAAGAGTCAAACCAAAAAAGGTAGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

247

Amino Acids

27.8

Weight (kDa)

9.59

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 87 1.6e-09 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 441
AccBSI CCGCTC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 736
AciI CCGC 2 cut(s) 10, 421
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 3 cut(s) 198, 319, 426
AcuI CTGAAG 1 cut(s) 600
AfiI CCNNNNNNNGG 5 cut(s) 113, 178, 179, 441, 680
AgsI TTSAA 3 cut(s) 217, 325, 667
AjnI CCWGG 1 cut(s) 244
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 3 cut(s) 16, 123, 688
AluI AGCT 3 cut(s) 16, 123, 688
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 3 cut(s) 372, 398, 552
AlwI GGATC 1 cut(s) 307
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 707
ApeKI GCWGC 2 cut(s) 128, 257
ApoI RAATTY 3 cut(s) 198, 319, 426
AseI ATTAAT 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 115, 269
BccI CCATC 3 cut(s) 67, 104, 718
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 625
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 3 cut(s) 372, 398, 552
BfaI CTAG 1 cut(s) 303
BisI GCNGC 3 cut(s) 129, 258, 422
BlsI GCNGC 3 cut(s) 130, 259, 423
Bme1390I CCNGG 2 cut(s) 180, 246
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 499, 661
BmrFI CCNGG 2 cut(s) 180, 246
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 168
BoxI GACNNNNGTC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 552
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 178, 179, 441, 680
Bse1I ACTGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 5 cut(s) 113, 178, 179, 441, 680
BseMII CTCAG 3 cut(s) 20, 74, 408
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 115, 269
BshFI GGCC 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 524
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 5 cut(s) 113, 178, 179, 441, 680
BsmAI GTCTC 3 cut(s) 372, 398, 552
BsnI GGCC 1 cut(s) 709
Bso31I GGTCTC 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 2 cut(s) 312, 625
BspACI CCGC 2 cut(s) 10, 421
BspANI GGCC 1 cut(s) 709
BspCNI CTCAG 3 cut(s) 21, 73, 409
BspLI GGNNCC 2 cut(s) 499, 661
BspPI GGATC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 552
BsrBI CCGCTC 1 cut(s) 421
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 2 cut(s) 312, 625
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 212, 545, 576
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 5 cut(s) 29, 60, 140, 417, 704
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 2 cut(s) 315, 628
BstMAI GTCTC 3 cut(s) 372, 398, 552
BstMBI GATC 2 cut(s) 312, 625
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 246
BstPAI GACNNNNGTC 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 178, 244
BstV1I GCAGC 2 cut(s) 115, 269
BstV2I GAAGAC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 709
BtsCI GGATG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 498
CseI GACGC 1 cut(s) 255
CviAII CATG 1 cut(s) 46
CviJI RGCY 9 cut(s) 16, 123, 253, 260, 445, 550, 660, 688, 709
CviKI_1 RGCY 9 cut(s) 16, 123, 253, 260, 445, 550, 660, 688, 709
DdeI CTNAG 5 cut(s) 29, 60, 140, 417, 704
DpnI GATC 2 cut(s) 314, 627
DpnII GATC 2 cut(s) 312, 625
Eco31I GGTCTC 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 47, 459, 564, 742
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 1 cut(s) 736
Fnu4HI GCNGC 3 cut(s) 129, 258, 422
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 3 cut(s) 129, 258, 422
FspBI CTAG 1 cut(s) 303
GluI GCNGC 3 cut(s) 129, 258, 422
HaeIII GGCC 1 cut(s) 709
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 255
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 2 cut(s) 358, 718
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 300, 737
Hpy188I TCNGA 6 cut(s) 30, 63, 317, 580, 592, 606
Hpy188III TCNNGA 2 cut(s) 310, 667
Hpy8I GTNNAC 2 cut(s) 300, 737
HpyAV CCTTC 3 cut(s) 158, 670, 673
HpyCH4III ACNGT 3 cut(s) 212, 545, 576
HpyCH4V TGCA 2 cut(s) 49, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 5 cut(s) 29, 60, 140, 417, 704
Hsp92II CATG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 2 cut(s) 312, 625
LmnI GCTCC 3 cut(s) 13, 182, 665
Lsp1109I GCAGC 2 cut(s) 115, 269
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 303
MalI GATC 2 cut(s) 314, 627
MbiI CCGCTC 1 cut(s) 421
MboI GATC 2 cut(s) 312, 625
MboII GAAGA 8 cut(s) 91, 98, 101, 104, 107, 261, 264, 459
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 6 cut(s) 186, 198, 225, 319, 325, 426
MlyI GAGTC 1 cut(s) 727
MnlI CCTC 4 cut(s) 24, 61, 271, 511
MseI TTAA 5 cut(s) 38, 189, 207, 224, 399
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 180, 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 180
NdeII GATC 2 cut(s) 312, 625
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 499, 661
PfeI GAWTC 1 cut(s) 358
PflMI CCANNNNNTGG 1 cut(s) 441
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 3 cut(s) 130, 259, 423
PleI GAGTC 1 cut(s) 726
PpsI GAGTC 1 cut(s) 726
PpuMI RGGWCCY 1 cut(s) 498
PshAI GACNNNNGTC 1 cut(s) 174
PshBI ATTAAT 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 499, 661
PspPI GGNCC 1 cut(s) 498
PspPPI RGGWCCY 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 263
SaqAI TTAA 5 cut(s) 38, 189, 207, 224, 399
SatI GCNGC 3 cut(s) 129, 258, 422
Sau3AI GATC 2 cut(s) 312, 625
Sau96I GGNCC 1 cut(s) 498
SchI GAGTC 1 cut(s) 727
ScrFI CCNGG 2 cut(s) 180, 246
SduI GDGCHC 1 cut(s) 524
SetI ASST 8 cut(s) 18, 109, 125, 308, 418, 634, 690, 736
SfaNI GCATC 1 cut(s) 288
SinI GGWCC 1 cut(s) 498
Sse9I AATT 6 cut(s) 186, 198, 225, 319, 325, 426
SsiI CCGC 2 cut(s) 10, 421
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 178, 244
TaaI ACNGT 3 cut(s) 212, 545, 576
TasI AATT 6 cut(s) 186, 198, 225, 319, 325, 426
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 5 cut(s) 38, 189, 207, 224, 399
Tru9I TTAA 5 cut(s) 38, 189, 207, 224, 399
TseI GCWGC 2 cut(s) 128, 257
TspDTI ATGAA 4 cut(s) 34, 192, 303, 380
Van91I CCANNNNNTGG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 498
VspI ATTAAT 1 cut(s) 224
XapI RAATTY 3 cut(s) 198, 319, 426
XmiI GTMKAC 1 cut(s) 736
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.