MD03G1088800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011456
Physical Location & Seq
Forward (+)
7324960 .. 7326862
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1088800.v1.1.491

Sequence Viewer

Length: 561 bp
ATGGCGAAGCGAGAGCTTTCCAGCACTCTCAGGAACTTAAAGTTTATGCAAAGAGCAACTCAGAGAGAGGTGAAGAAAGAGGAAGATGTCAAACCAGCTGTGGATTTTGCTTTCCCTTCCCGCCAAATAAGAAAGTGCGTGGTCATAGTGGAAGGTGACCCTCAACCTGAAGCAGTTAGAGGGCGGATGTCGTTTCAAAGTTTCAATCCAGCGATTGATAAACTGAATCAAGTACCGGAAAACCCTGGTCAGCCTGCTGCCGCTGCCACATCTTCTAGCATCCATAGTGAAAAAGTGTCATTTAGAGAAAATGGATCCTCGATGGATGAAGCAGGGTGCTCAAATACTGACAAGTCGAACGGTGAGCCTAATGGAGACCATAAAAGAAAACAGTCCGAAGAAGTTTCTGGGAAACAACATCCGAACAAGTCGCCCAAACTTAATCAAGTTGGTCAGCAGTCATCACCAAATACAAGTAAGGGCTCCTTCAGGAAACCAAAGGGTGAAAACCTGAACTGGAATGTTCTCAGACCATCAAAGGGTCAAAACAAAAGAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

187

Amino Acids

20.57

Weight (kDa)

9.87

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 106 2.5e-08 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 121, 184, 261
AclWI GGATC 2 cut(s) 309, 322
AcuI CTGAAG 2 cut(s) 189, 472
AfaI GTAC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 539
AgsI TTSAA 2 cut(s) 197, 205
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 16, 98
AluI AGCT 2 cut(s) 16, 98
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 2 cut(s) 309, 322
ApeKI GCWGC 2 cut(s) 257, 263
AsuHPI GGTGA 5 cut(s) 82, 167, 374, 456, 515
BamHI GGATCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 244, 250
BccI CCATC 2 cut(s) 316, 541
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 1 cut(s) 276
BisI GCNGC 3 cut(s) 258, 261, 264
BlsI GCNGC 3 cut(s) 259, 262, 265
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 2 cut(s) 316, 484
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse1I ACTGG 1 cut(s) 521
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 4 cut(s) 192, 279, 331, 418
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMII CTCAG 3 cut(s) 43, 74, 541
BseNI ACTGG 1 cut(s) 521
BseXI GCAGC 2 cut(s) 244, 250
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 1 cut(s) 369
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 341, 485
Bsp143I GATC 1 cut(s) 314
BspACI CCGC 3 cut(s) 121, 184, 261
BspCNI CTCAG 3 cut(s) 42, 73, 540
BspLI GGNNCC 2 cut(s) 316, 484
BspPI GGATC 2 cut(s) 309, 322
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 314
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 362, 393
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 29, 60, 527
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 4 cut(s) 192, 279, 331, 418
BstKTI GATC 1 cut(s) 317
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 246
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 244, 250
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BtsCI GGATG 4 cut(s) 192, 279, 331, 418
Cac8I GCNNGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 233
CviJI RGCY 6 cut(s) 16, 98, 253, 367, 483, 558
CviKI_1 RGCY 6 cut(s) 16, 98, 253, 367, 483, 558
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 3 cut(s) 29, 60, 527
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
EciI GGCGGA 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 485
Eco31I GGTCTC 1 cut(s) 369
Eco57I CTGAAG 2 cut(s) 189, 472
Eco91I GGTNACC 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 485
FaiI YATR 4 cut(s) 47, 146, 285, 381
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 258, 261, 264
FokI GGATG 4 cut(s) 199, 266, 338, 405
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 3 cut(s) 258, 261, 264
FspBI CTAG 1 cut(s) 276
GluI GCNGC 3 cut(s) 258, 261, 264
HapII CCGG 1 cut(s) 236
HinfI GANTC 1 cut(s) 226
HpaII CCGG 1 cut(s) 236
HphI GGTGA 5 cut(s) 82, 167, 374, 456, 515
Hpy188I TCNGA 4 cut(s) 63, 397, 423, 530
Hpy188III TCNNGA 2 cut(s) 31, 490
HpyAV CCTTC 3 cut(s) 126, 146, 496
HpyCH4III ACNGT 2 cut(s) 362, 393
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 3 cut(s) 29, 60, 527
Kzo9I GATC 1 cut(s) 314
LmnI GCTCC 1 cut(s) 488
Lsp1109I GCAGC 2 cut(s) 244, 250
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 4 cut(s) 85, 95, 264, 410
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 2 cut(s) 341, 485
MnlI CCTC 6 cut(s) 61, 73, 171, 173, 328, 548
MseI TTAA 2 cut(s) 38, 441
MspA1I CMGCKG 2 cut(s) 98, 263
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 1 cut(s) 314
NlaIV GGNNCC 2 cut(s) 316, 484
NmuCI GTSAC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 3 cut(s) 259, 262, 265
Psp6I CCWGG 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 316, 484
PsuI RGATCY 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 38, 441
SatI GCNGC 3 cut(s) 258, 261, 264
Sau3AI GATC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 2 cut(s) 341, 485
SetI ASST 6 cut(s) 18, 72, 100, 157, 169, 513
SfaNI GCATC 1 cut(s) 288
SsiI CCGC 3 cut(s) 121, 184, 261
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 362, 393
TaqI TCGA 2 cut(s) 320, 356
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 38, 441
Tru9I TTAA 2 cut(s) 38, 441
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 2 cut(s) 257, 263
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 342
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.