MD11G1097800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011456
Physical Location & Seq
Forward (+)
8114792 .. 8116818
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1097800.v1.1.491

Sequence Viewer

Length: 561 bp
ATGGCGAAGCGAGAGCTTTCCAGCACTCTCAGGAACTTAAAGTTTATGCAAAGAGCAACTCAGAGAGAGGTGAAGAAAGAAGAAGATGCCAAACCTGCTGTGGATTTTGCTTTCCCTGCCCGCCAAATAAGAAAGTGTGTGGTCATAGTGGAAGGTGACCCGCAACCTGAAGCGATTAGGGGGCGGATGTCATTTCAAAGCTTCAATCCATCGATTGATAAACTGAATCAAGTATCGGAAAACCCTGGTCAGCCTGCTGCCCCTGCCACATCTTCCGGCGTTCAAAGTGAAAAAGTGTCATTTAGAGAAAATGGGTCCTCAATGGATGAAGCAGAGTGCTCAAATACTAATAAGTTGAACAGTAAGACTAATGGAGACCATAAAAGAAAACAGTCTGAAGTAGTTTCTGGGAAACAACATCTGAACAAGTCACCCAAACTTAATCAAGGTGGTCAGCAGCCGTCACCAAATACAAGTAAAGGTTCCTTCAGGAAACCAAAGGGTGAAAACCTGAACTGGAACGTTCTTAGACCATCAAAGGGTCAAAACAAAAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

187

Amino Acids

20.6

Weight (kDa)

10.09

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 112 5.7e-09 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 103
AciI CCGC 3 cut(s) 121, 161, 184
AclI AACGTT 1 cut(s) 522
AcuI CTGAAG 3 cut(s) 189, 417, 472
AfiI CCNNNNNNNGG 1 cut(s) 539
AgsI TTSAA 4 cut(s) 197, 205, 284, 358
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 16, 201
AluI AGCT 2 cut(s) 16, 201
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 369
ApeKI GCWGC 2 cut(s) 257, 457
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 5 cut(s) 82, 167, 423, 456, 515
AvaII GGWCC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 244, 469
BccI CCATC 2 cut(s) 217, 541
BceAI ACGGC 1 cut(s) 445
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 2 cut(s) 258, 458
BlsI GCNGC 2 cut(s) 259, 459
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 316, 484
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 76
Bsa29I ATCGAT 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse1I ACTGG 1 cut(s) 521
BseBI CCWGG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 192, 331
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMII CTCAG 2 cut(s) 43, 74
BseNI ACTGG 1 cut(s) 521
BseXI GCAGC 2 cut(s) 244, 469
BshVI ATCGAT 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 1 cut(s) 369
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 341
BspACI CCGC 3 cut(s) 121, 161, 184
BspCNI CTCAG 2 cut(s) 42, 73
BspDI ATCGAT 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 316, 484
BspMI ACCTGC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 362, 393
BstC8I GCNNGC 2 cut(s) 121, 255
BstDEI CTNAG 3 cut(s) 29, 60, 527
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 2 cut(s) 192, 331
BstMAI GTCTC 1 cut(s) 369
BstMWI GCNNNNNNNGC 3 cut(s) 95, 116, 263
BstNI CCWGG 1 cut(s) 246
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 244, 469
Bsu15I ATCGAT 1 cut(s) 212
BsuTUI ATCGAT 1 cut(s) 212
BtsCI GGATG 2 cut(s) 192, 331
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 121, 255
Cfr13I GGNCC 1 cut(s) 315
ClaI ATCGAT 1 cut(s) 212
CviJI RGCY 4 cut(s) 16, 201, 253, 460
CviKI_1 RGCY 4 cut(s) 16, 201, 253, 460
DdeI CTNAG 3 cut(s) 29, 60, 527
EciI GGCGGA 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 3 cut(s) 189, 417, 472
Eco91I GGTNACC 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 244
FaiI YATR 3 cut(s) 47, 146, 381
FauI CCCGC 2 cut(s) 128, 168
Fnu4HI GCNGC 2 cut(s) 258, 458
FokI GGATG 2 cut(s) 199, 338
Fsp4HI GCNGC 2 cut(s) 258, 458
GluI GCNGC 2 cut(s) 258, 458
HapII CCGG 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 1 cut(s) 226
HpaII CCGG 1 cut(s) 276
HphI GGTGA 5 cut(s) 82, 167, 423, 456, 515
Hpy188I TCNGA 4 cut(s) 63, 238, 397, 423
Hpy188III TCNNGA 2 cut(s) 31, 490
HpyAV CCTTC 2 cut(s) 146, 496
HpyCH4III ACNGT 2 cut(s) 362, 393
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 116, 263
HpyF3I CTNAG 3 cut(s) 29, 60, 527
HpySE526I ACGT 1 cut(s) 522
Lsp1109I GCAGC 2 cut(s) 244, 469
LweI GCATC 1 cut(s) 76
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 3 cut(s) 155, 429, 462
MboII GAAGA 4 cut(s) 85, 92, 95, 264
MhlI GDGCHC 1 cut(s) 341
MnlI CCTC 3 cut(s) 61, 328, 548
MseI TTAA 2 cut(s) 38, 441
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 95, 116, 263
NlaIV GGNNCC 2 cut(s) 316, 484
NmuCI GTSAC 3 cut(s) 155, 429, 462
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 2 cut(s) 259, 459
PpuMI RGGWCCY 1 cut(s) 315
Psp1406I AACGTT 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 316, 484
PspPI GGNCC 1 cut(s) 315
PspPPI RGGWCCY 1 cut(s) 315
SaqAI TTAA 2 cut(s) 38, 441
SatI GCNGC 2 cut(s) 258, 458
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 341
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 315
SsiI CCGC 3 cut(s) 121, 161, 184
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 362, 393
TaiI ACGT 1 cut(s) 525
TaqI TCGA 1 cut(s) 212
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 38, 441
Tru9I TTAA 2 cut(s) 38, 441
TseFI GTSAC 3 cut(s) 155, 429, 462
TseI GCWGC 2 cut(s) 257, 457
Tsp45I GTSAC 3 cut(s) 155, 429, 462
TspDTI ATGAA 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.