pycom11g08260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011456
Physical Location & Seq
Forward (+)
6358606 .. 6360672
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08260.4

Sequence Viewer

Length: 561 bp
ATGGCGAAGCGAGAGCTTTCCAGCACTCTCAGGAACTTAAAGTTTATGCAAAGAGCAACTCAGAGAGAGGTGAAGAAAGAAGAAGATGCCAAACCTGCTGCGGATTTTGCTTTCCCTGCCCGTCAAATAAGAAAGTGTGTGGTCATAGTGGAAGGTGACCCTCAACCTGAAGCCATTAGGGGGCGGATGTCATTTCAAAGCTTCAATCCATCGATTGATAAACTGAATCAAGTATCGGAAAACCCTGGTCAGCCTGCTGCCCCTGCCGCATCTTCTGGCGTTCAAAGTGAAAAAGTGTCATTTAGAGAAAATGGGTCCTCGATGGATGAAGCAGAGTGCTCAAATACTAATAAGTCGAACAGTAAGACTAATGGAGACCATAAAAGAAAACAGTCTGAAACAGTTTCTGGGAAACAACATCCAAACAAGTCGCCCAAACTTAATCAAGGTGATCAGCAGCCATCACCAAATACAAGTAAAGGTTCCTTCAGGAAACCAAAGGGTGACAACCTGAACTGGAACGTTCTTAGACCATCAAAGGGTCAAAACAAAAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
MPP6

Protein Analysis

187

Amino Acids

20.55

Weight (kDa)

10.0

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59460 AT5G59460
fragaria_vesca FvH4_3g36750
malus_domestica MD03G1088800.v1.1 MD11G1097800.v1.1
prunus_persica Prupe.6G073200_v2.0.a1 Prupe.6G073200_v2.0.a1
pyrus_communis pycom03g07040 pycom11g08260
rosa_chinensis RchiOBHm_Chr5g0065711
rosa_laevigata RLG00000035817
rosa_multiflora Rmu_sc0003636.1_g000013
rosa_roxburghii Rroxscaffold_1G00015370
rosa_rugosa Rorug05G0373400 Rorug05G0373400
rosa_samantha Rh5AG432100 Rh5BG448200 Rh5CG470400 Rh5DG461700
rosa_wichuraiana Rw5G040520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 103
AciI CCGC 3 cut(s) 101, 184, 267
AclI AACGTT 1 cut(s) 522
AcuI CTGAAG 2 cut(s) 189, 472
AfiI CCNNNNNNNGG 2 cut(s) 180, 539
AgsI TTSAA 3 cut(s) 197, 205, 284
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 16, 201
AluI AGCT 2 cut(s) 16, 201
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 369
AlwNI CAGNNNCTG 1 cut(s) 407
ApeKI GCWGC 3 cut(s) 98, 257, 457
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 5 cut(s) 82, 167, 456, 461, 515
AvaII GGWCC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 3 cut(s) 85, 244, 469
BccI CCATC 4 cut(s) 217, 316, 469, 541
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 4 cut(s) 99, 258, 267, 458
BlsI GCNGC 4 cut(s) 100, 259, 268, 459
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 316, 484
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 76, 278
Bsa29I ATCGAT 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 539
Bse1I ACTGG 1 cut(s) 521
BseBI CCWGG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 3 cut(s) 192, 331, 418
BseLI CCNNNNNNNGG 2 cut(s) 180, 539
BseMII CTCAG 2 cut(s) 43, 74
BseNI ACTGG 1 cut(s) 521
BseXI GCAGC 3 cut(s) 85, 244, 469
BshVI ATCGAT 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 180, 539
BsmAI GTCTC 1 cut(s) 369
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 1 cut(s) 451
BspACI CCGC 3 cut(s) 101, 184, 267
BspCNI CTCAG 2 cut(s) 42, 73
BspDI ATCGAT 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 316, 484
BspMI ACCTGC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 3 cut(s) 362, 393, 403
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 29, 60, 527
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 3 cut(s) 192, 331, 418
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 5 cut(s) 95, 107, 116, 263, 266
BstNI CCWGG 1 cut(s) 246
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 3 cut(s) 85, 244, 469
Bsu15I ATCGAT 1 cut(s) 212
BsuTUI ATCGAT 1 cut(s) 212
BtsCI GGATG 3 cut(s) 192, 331, 418
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 315
ClaI ATCGAT 1 cut(s) 212
CviJI RGCY 5 cut(s) 16, 173, 201, 253, 460
CviKI_1 RGCY 5 cut(s) 16, 173, 201, 253, 460
DdeI CTNAG 3 cut(s) 29, 60, 527
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
EciI GGCGGA 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 189, 472
Eco91I GGTNACC 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 244
FaiI YATR 3 cut(s) 47, 146, 381
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 4 cut(s) 99, 258, 267, 458
FokI GGATG 3 cut(s) 199, 338, 405
Fsp4HI GCNGC 4 cut(s) 99, 258, 267, 458
GluI GCNGC 4 cut(s) 99, 258, 267, 458
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 1 cut(s) 226
HphI GGTGA 5 cut(s) 82, 167, 456, 461, 515
Hpy188I TCNGA 3 cut(s) 63, 238, 397
Hpy188III TCNNGA 2 cut(s) 31, 490
HpyAV CCTTC 2 cut(s) 146, 496
HpyCH4III ACNGT 3 cut(s) 362, 393, 403
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 107, 116, 263, 266
HpyF3I CTNAG 3 cut(s) 29, 60, 527
HpySE526I ACGT 1 cut(s) 522
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 1 cut(s) 451
Lsp1109I GCAGC 3 cut(s) 85, 244, 469
LweI GCATC 2 cut(s) 76, 278
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 2 cut(s) 155, 503
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 4 cut(s) 85, 92, 95, 264
MhlI GDGCHC 1 cut(s) 341
MnlI CCTC 4 cut(s) 61, 171, 328, 548
MseI TTAA 2 cut(s) 38, 441
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 5 cut(s) 95, 107, 116, 263, 266
NdeII GATC 1 cut(s) 451
NlaIV GGNNCC 2 cut(s) 316, 484
NmuCI GTSAC 2 cut(s) 155, 503
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 4 cut(s) 100, 259, 268, 459
PpuMI RGGWCCY 1 cut(s) 315
Psp1406I AACGTT 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 316, 484
PspPI GGNCC 1 cut(s) 315
PspPPI RGGWCCY 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 407
SaqAI TTAA 2 cut(s) 38, 441
SatI GCNGC 4 cut(s) 99, 258, 267, 458
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 341
SfaNI GCATC 2 cut(s) 76, 278
SinI GGWCC 1 cut(s) 315
SsiI CCGC 3 cut(s) 101, 184, 267
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 362, 393, 403
TaiI ACGT 1 cut(s) 525
TaqI TCGA 3 cut(s) 212, 320, 356
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 38, 441
Tru9I TTAA 2 cut(s) 38, 441
TseFI GTSAC 2 cut(s) 155, 503
TseI GCWGC 3 cut(s) 98, 257, 457
Tsp45I GTSAC 2 cut(s) 155, 503
TspDTI ATGAA 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.