AT5G60680

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013237
Physical Location & Seq
Forward (+)
24386010 .. 24387304
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60680.1

Sequence Viewer

Length: 492 bp
ATGGCGACGGGAAAGAGTTACTACGCTAGGCCTAGCTATCGATTTCTCGGCACCGATCAGCCGTCTTACTTCACCGCTTCCGATTCAGGTCTCGAATTCGACGAATCCGATCTCTTCAATCCAATCCACTCCGATTCACCAGATTTTTGCCGTAAAATCTCTTCATCAGTCAGATCCGGTAAAAAATCGTCGAATCGTCCCTCCGCCGCTTCCTCCGCCGCAGCAGCGTCGTCGCTTCCTGTTAACGTGCCGGACTGGTCCAAGATTCTCCGCGGAGAATACCGCGATAACCGACGGAGAAGCATCGAGGATAACGACGACGATGACGATGATAACGAAGACGGTGGCGATTGGTTACCGCCGCATGAGTTTCTGGCGAAGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTAGGGAGGACATTGAAAGGAAGAGATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAAATTTGGGTTCCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

163

Amino Acids

18.23

Weight (kDa)

5.42

Isoelectric Point (pI)

55.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 52 - 163 5.1e-38 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccII CGCG 2 cut(s) 273, 285
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 2 cut(s) 95, 473
AgsI TTSAA 3 cut(s) 118, 430, 470
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 221, 224
ApoI RAATTY 2 cut(s) 95, 473
Asp700I GAANNNNTTC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 64, 129
AsuII TTCGAA 1 cut(s) 454
AvaII GGWCC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 50
BarI GAAGNNNNNNTAC 2 cut(s) 145, 177
BbsI GAAGAC 2 cut(s) 345, 386
BbvI GCAGC 2 cut(s) 233, 236
BceAI ACGGC 2 cut(s) 46, 135
BcgI CGANNNNNNTGC 4 cut(s) 210, 213, 244, 247
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 27, 33
BglII AGATCT 1 cut(s) 439
BisI GCNGC 5 cut(s) 207, 219, 222, 225, 362
BlsI GCNGC 5 cut(s) 208, 220, 223, 226, 363
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 2 cut(s) 52, 482
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 2 cut(s) 345, 386
Bpu14I TTCGAA 1 cut(s) 454
Bsa29I ATCGAT 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 233, 236
Bsh1236I CGCG 2 cut(s) 273, 285
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 40
BsiSI CCGG 2 cut(s) 177, 251
BslFI GGGAC 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 31
Bso31I GGTCTC 1 cut(s) 95
Bsp119I TTCGAA 1 cut(s) 454
Bsp143I GATC 4 cut(s) 55, 109, 173, 439
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 435
BspDI ATCGAT 1 cut(s) 40
BspFNI CGCG 2 cut(s) 273, 285
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 52, 482
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 4 cut(s) 55, 109, 173, 439
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 3 cut(s) 119, 166, 430
BstBI TTCGAA 1 cut(s) 454
BstDEI CTNAG 1 cut(s) 443
BstDSI CCRYGG 1 cut(s) 271
BstEII GGTNACC 1 cut(s) 354
BstFNI CGCG 2 cut(s) 273, 285
BstKTI GATC 4 cut(s) 58, 112, 176, 442
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 55, 109, 173, 439
BstMWI GCNNNNNNNGC 2 cut(s) 215, 224
BstPI GGTNACC 1 cut(s) 354
BstUI CGCG 2 cut(s) 273, 285
BstV1I GCAGC 2 cut(s) 233, 236
BstV2I GAAGAC 2 cut(s) 345, 386
BstX2I RGATCY 2 cut(s) 173, 439
BstYI RGATCY 2 cut(s) 173, 439
Bsu15I ATCGAT 1 cut(s) 40
BsuRI GGCC 1 cut(s) 31
BsuTUI ATCGAT 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 271
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 258
Cfr42I CCGCGG 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 40
CseI GACGC 1 cut(s) 216
CviAII CATG 2 cut(s) 365, 407
CviJI RGCY 4 cut(s) 31, 36, 61, 392
CviKI_1 RGCY 4 cut(s) 31, 36, 61, 392
DdeI CTNAG 1 cut(s) 443
DpnI GATC 4 cut(s) 57, 111, 175, 441
DpnII GATC 4 cut(s) 55, 109, 173, 439
Eam1104I CTCTTC 3 cut(s) 119, 166, 430
EarI CTCTTC 3 cut(s) 119, 166, 430
EciI GGCGGA 2 cut(s) 193, 205
Eco147I AGGCCT 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 354
EcoO65I GGTNACC 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 95
FaeI CATG 2 cut(s) 368, 410
FaiI YATR 2 cut(s) 366, 408
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 364, 406
Fnu4HI GCNGC 5 cut(s) 207, 219, 222, 225, 362
Fsp4HI GCNGC 5 cut(s) 207, 219, 222, 225, 362
FspBI CTAG 2 cut(s) 27, 33
GluI GCNGC 5 cut(s) 207, 219, 222, 225, 362
HaeIII GGCC 1 cut(s) 31
HapII CCGG 2 cut(s) 177, 251
HgaI GACGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 368, 410
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 5 cut(s) 83, 104, 134, 193, 265
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 2 cut(s) 177, 251
HphI GGTGA 2 cut(s) 64, 129
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 5 cut(s) 82, 109, 133, 173, 444
Hpy188III TCNNGA 2 cut(s) 92, 407
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 8 cut(s) 10, 104, 193, 232, 235, 297, 320, 323
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 224
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 368, 410
KspAI GTTAAC 1 cut(s) 244
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 4 cut(s) 55, 109, 173, 439
LpnPI CCDG 7 cut(s) 72, 153, 190, 241, 252, 264, 359
Lsp1109I GCAGC 2 cut(s) 233, 236
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 27, 33
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 17, 354
MalI GATC 4 cut(s) 57, 111, 175, 441
MboI GATC 4 cut(s) 55, 109, 173, 439
MboII GAAGA 5 cut(s) 106, 153, 350, 391, 447
MflI RGATCY 2 cut(s) 173, 439
MluCI AATT 3 cut(s) 95, 462, 473
MnlI CCTC 4 cut(s) 211, 223, 301, 414
MroXI GAANNNNTTC 1 cut(s) 391
MseI TTAA 2 cut(s) 243, 490
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 2 cut(s) 177, 251
MvnI CGCG 2 cut(s) 273, 285
MwoI GCNNNNNNNGC 2 cut(s) 215, 224
NdeII GATC 4 cut(s) 55, 109, 173, 439
NlaIII CATG 2 cut(s) 368, 410
NlaIV GGNNCC 2 cut(s) 52, 482
NmeAIII GCCGAG 1 cut(s) 27
NspV TTCGAA 1 cut(s) 454
PagI TCATGA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 31
PcsI WCGNNNNNNNCGW 5 cut(s) 99, 105, 312, 324, 333
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 5 cut(s) 83, 104, 134, 193, 265
PkrI GCNGC 5 cut(s) 208, 220, 223, 226, 363
PspEI GGTNACC 1 cut(s) 354
PspN4I GGNNCC 2 cut(s) 52, 482
PspPI GGNCC 1 cut(s) 258
PsuI RGATCY 2 cut(s) 173, 439
SacII CCGCGG 1 cut(s) 274
SaqAI TTAA 2 cut(s) 243, 490
SatI GCNGC 5 cut(s) 207, 219, 222, 225, 362
Sau3AI GATC 4 cut(s) 55, 109, 173, 439
Sau96I GGNCC 1 cut(s) 258
SetI ASST 3 cut(s) 38, 91, 249
SfaNI GCATC 1 cut(s) 312
Sfr303I CCGCGG 1 cut(s) 274
SfuI TTCGAA 1 cut(s) 454
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 1 cut(s) 258
Sse9I AATT 3 cut(s) 95, 462, 473
SseBI AGGCCT 1 cut(s) 31
SspMI CTAG 2 cut(s) 27, 33
StuI AGGCCT 1 cut(s) 31
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 249
TaqI TCGA 6 cut(s) 40, 93, 99, 191, 306, 454
TasI AATT 3 cut(s) 95, 462, 473
TauI GCSGC 3 cut(s) 209, 221, 364
TfiI GAWTC 5 cut(s) 83, 104, 134, 193, 265
Tru1I TTAA 2 cut(s) 243, 490
Tru9I TTAA 2 cut(s) 243, 490
TseI GCWGC 2 cut(s) 221, 224
TspDTI ATGAA 3 cut(s) 153, 395, 423
TspGWI ACGGA 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 2 cut(s) 95, 473
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 2 cut(s) 27, 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.