Rorug05G0319600

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013237
Physical Location & Seq
Reverse (-)
37911748 .. 37912092
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0319600.1

Sequence Viewer

Length: 345 bp
ATGACGTCGTTTCCGCTCTTGTCTCGGGCATCGCGTAAGCTTTTAAAGCCTCCTTCACTCTCTCGCTCCCATCTCTCTGCTACAGTCTCTACCTATCACCCAACCACCAAATCCAACCCTAAAGAAATGCCCTTCATCCCATTTAATCTCAGGCACCGTTGGATTCCCAATTATCTTGATTATGATCTCAGGCTCGTAGCACATATATCCACTTCATCGAACAAGGACGACAATCAGGTCAGCGATGACCCGAAGGCCCAAGCTTTTTGGATCTACGCTTATTTGCCCAGGCAGGCCCACCCTTATGCTAAGCTGGCTCGCCTCGACAAGCCGATTGGCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

114

Amino Acids

13.11

Weight (kDa)

9.99

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60680
fragaria_vesca FvH4_3g32220
malus_domestica MD03G1118100.v1.1 MD11G1136500.v1.1
prunus_persica Prupe.6G101900_v2.0.a1 Prupe.6G101900_v2.0.a1
pyrus_communis pycom11g11300
rosa_chinensis RchiOBHm_Chr5g0058841
rosa_laevigata RLG00000035255
rosa_multiflora Rmu_co8262839.1_g000001 Rmu_sc0005457.1_g000008
rosa_roxburghii Rroxscaffold_1G00021540
rosa_rugosa Rorug05G0319600
rosa_samantha Rh5AG384300 Rh5BG396200 Rh5CG420100 Rh5DG412000
rosa_wichuraiana Rw5G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 2 cut(s) 153, 338
AccBSI CCGCTC 1 cut(s) 16
AccII CGCG 1 cut(s) 34
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 5
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 3 cut(s) 40, 263, 313
AluI AGCT 3 cut(s) 40, 263, 313
Alw26I GTCTC 2 cut(s) 27, 91
AlwI GGATC 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 2 cut(s) 255, 294
AspS9I GGNCC 2 cut(s) 256, 295
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 24
BanI GGYRCC 2 cut(s) 153, 338
BccI CCATC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 27, 91
BfaI CTAG 1 cut(s) 343
BfmI CTRYAG 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 309
Bme1390I CCNGG 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 256, 295
BmiI GGNNCC 2 cut(s) 155, 340
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 287
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 183
BseMII CTCAG 2 cut(s) 163, 202
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 257, 296
BshNI GGYRCC 2 cut(s) 153, 338
BsiHKCI CYCGRG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 27, 91
BsnI GGCC 2 cut(s) 257, 296
BsoBI CYCGRG 1 cut(s) 24
Bsp143I GATC 2 cut(s) 184, 270
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 1 cut(s) 14
BspANI GGCC 2 cut(s) 257, 296
BspCNI CTCAG 2 cut(s) 162, 201
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 155, 340
BspPI GGATC 1 cut(s) 278
BspT107I GGYRCC 2 cut(s) 153, 338
BsrBI CCGCTC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 2 cut(s) 184, 270
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 85, 158
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 294, 315, 319
BstDEI CTNAG 3 cut(s) 149, 188, 309
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 2 cut(s) 187, 273
BstMAI GTCTC 2 cut(s) 27, 91
BstMBI GATC 2 cut(s) 184, 270
BstMWI GCNNNNNNNGC 2 cut(s) 46, 314
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 2 cut(s) 257, 296
BtgZI GCGATG 2 cut(s) 15, 258
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 3 cut(s) 294, 315, 319
Cfr13I GGNCC 2 cut(s) 256, 295
CviJI RGCY 9 cut(s) 40, 49, 193, 257, 263, 296, 313, 317, 331
CviKI_1 RGCY 9 cut(s) 40, 49, 193, 257, 263, 296, 313, 317, 331
DdeI CTNAG 3 cut(s) 149, 188, 309
DpnI GATC 2 cut(s) 186, 272
DpnII GATC 2 cut(s) 184, 270
DraI TTTAAA 1 cut(s) 45
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 287
FaiI YATR 4 cut(s) 183, 204, 206, 306
FokI GGATG 1 cut(s) 122
FspBI CTAG 1 cut(s) 343
HaeIII GGCC 2 cut(s) 257, 296
Hin1I GRCGYC 1 cut(s) 5
HindIII AAGCTT 2 cut(s) 38, 261
HinfI GANTC 1 cut(s) 163
HphI GGTGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 176
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 63, 142, 247
HpyCH4III ACNGT 2 cut(s) 85, 158
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 314
HpyF3I CTNAG 3 cut(s) 149, 188, 309
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 184, 270
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 7 cut(s) 136, 175, 221, 274, 278, 299, 301
LweI GCATC 1 cut(s) 38
MaeI CTAG 1 cut(s) 343
MaeII ACGT 1 cut(s) 5
MalI GATC 2 cut(s) 186, 272
MbiI CCGCTC 1 cut(s) 16
MboI GATC 2 cut(s) 184, 270
MflI RGATCY 1 cut(s) 270
MluCI AATT 1 cut(s) 169
MmeI TCCRAC 2 cut(s) 138, 140
MnlI CCTC 2 cut(s) 60, 332
MseI TTAA 2 cut(s) 44, 144
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 46, 314
NdeII GATC 2 cut(s) 184, 270
NlaIV GGNNCC 2 cut(s) 155, 340
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PfeI GAWTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 155, 340
PspPI GGNCC 2 cut(s) 256, 295
PsuI RGATCY 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 2 cut(s) 44, 144
Sau3AI GATC 2 cut(s) 184, 270
Sau96I GGNCC 2 cut(s) 256, 295
ScrFI CCNGG 1 cut(s) 289
SetI ASST 7 cut(s) 8, 42, 95, 240, 265, 315, 344
SfaNI GCATC 1 cut(s) 38
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 2 cut(s) 85, 158
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 218, 324
TasI AATT 1 cut(s) 169
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 2 cut(s) 44, 144
Tru9I TTAA 2 cut(s) 44, 144
TspDTI ATGAA 2 cut(s) 124, 204
XspI CTAG 1 cut(s) 343
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.